Ggra10391.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10391.t1
Unique Name	Ggra10391.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	611

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000108_pilon	contig	tig00000108_pilon:192680..194512 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704188.1
PFAMs	HMGL-like,LeuA_dimer
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00470,RC02754
KEGG ko	ko:K01649
KEGG Reaction	R01213
KEGG Pathway	ko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG Module	M00432
Evalue	1.02e-256
EggNOG OGs	COG0119@1\|root,KOG2367@2759\|Eukaryota
EC	2.3.3.13
Description	Belongs to the alpha-IPM synthase homocitrate synthase family
COG category	E
BRITE	br01601,ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10391	Ggra10391	Gracilaria gracilis GNS1m male	gene	tig00000108_pilon 192680..194512 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10391.t1.stop1	Ggra10391.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000108_pilon 192680..192682 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10391.t1.CDS1	Ggra10391.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000108_pilon 192680..194512 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10391.t1.exon1	Ggra10391.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000108_pilon 192680..194512 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10391.t1.start1	Ggra10391.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000108_pilon 194510..194512 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10391.t1	Ggra10391.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000108_pilon 192680..194512 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000108_pilon:192680..194512-
coding sequence from alignment at tig00000108_pilon:192680..194512-

mRNA sequence

>Ggra10391.t1 ID=Ggra10391.t1|Name=Ggra10391.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=611bp
MDRSTFVSPIQTLNSASSLWTKPASVNERRPRVFATRRQVRPLQMVVINE
SQTAPSSTTVPKRTPTKHDVATGRDPDRVKIFDTTLRDGEQSPGATLTAD
EKKIIARQLAKLGVDIIEAGFPIASEGDYEAVKAIAKEIGNMHNPPIICG
LARALEKDISRCHDAIKHAAFPRIHTFIATSDLHMAYKLKKTREQVLEIT
TNMVTYARSLCEDVEFSAEDAIRSDPEFLCQVFSRAIEAGATTINVPDTV
GYTTPAEFGALIGYLRQNVRGIDDVTISVHGHDDLGMAVANFLCAVENGA
RQMEVTINGIGERAGNASLEEVVMALYVRRRYYNSRLGRPQESEAPITNI
EHAEIYNTSRMVSNLTGLMVQPNKAIVGANAFAHESGIHQDGVLKHRQTY
EIMDARSIGLSENIIVLGKHSGRHAFKKRLQHMGYEVNDEELERAFRRFK
DLADKKKVVSELDIESLVNDEVRHVPEAVKLCRIQVQCGDHCVPTATVTL
QFTGTEDEHTISSTGTGPVDAAFNAINTVVHGKVDVDLQEFRVSSVTEGI
DALGEVAVRVTDGSDGRQYTGYSANTDVVVASAQAYVNAINRCQLSRTKP
EPIHPQFGRV*

spliced messenger RNA

>Ggra10391.t1 ID=Ggra10391.t1|Name=Ggra10391.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1833bp|location=Sequence derived from alignment at tig00000108_pilon:192680..194512- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAGGTCGACCTTTGTCTCTCCGATACAGACTCTTAACTCTGCCTC
CTCGCTATGGACCAAACCCGCGTCGGTGAACGAGCGTAGACCGCGCGTGT
TTGCCACTCGTCGTCAAGTGCGCCCTTTACAAATGGTGGTTATCAACGAG
TCGCAAACCGCACCAAGCTCAACCACCGTTCCCAAGCGAACTCCGACCAA
GCACGACGTTGCCACGGGTCGTGACCCGGATCGTGTCAAGATATTTGACA
CCACGCTTCGCGATGGCGAACAGAGCCCTGGAGCTACTCTCACCGCAGAT
GAGAAGAAGATTATTGCAAGGCAGCTCGCCAAACTCGGAGTGGACATTAT
AGAGGCTGGATTCCCCATTGCGTCAGAGGGAGATTACGAGGCTGTGAAAG
CTATTGCGAAGGAGATCGGAAACATGCACAATCCTCCCATCATCTGTGGT
CTCGCTCGTGCGTTAGAGAAGGACATATCCAGATGCCACGACGCCATAAA
GCACGCTGCTTTCCCCAGGATCCATACATTTATTGCTACGTCGGATCTTC
ATATGGCATACAAGCTGAAGAAGACCAGAGAGCAAGTTCTTGAAATTACA
ACGAACATGGTCACCTACGCTAGAAGCCTTTGTGAGGATGTTGAATTCTC
TGCAGAAGATGCCATTCGTTCTGATCCTGAGTTTCTTTGTCAAGTATTCT
CGCGCGCAATCGAGGCAGGCGCTACGACCATCAACGTTCCAGATACTGTC
GGTTATACTACTCCCGCCGAGTTTGGCGCTTTGATAGGGTATCTTCGTCA
AAACGTACGTGGCATAGATGATGTAACTATTTCAGTACATGGCCATGATG
ATCTTGGAATGGCAGTAGCAAACTTTCTGTGCGCGGTAGAGAACGGTGCT
AGACAGATGGAAGTCACAATCAATGGCATTGGCGAGCGCGCTGGAAATGC
GTCCCTGGAGGAAGTTGTGATGGCTCTCTATGTACGTCGTCGATACTACA
ACTCTCGTCTTGGACGACCACAAGAGAGCGAGGCACCAATTACAAACATC
GAGCATGCTGAAATCTACAATACATCCAGAATGGTTTCGAATCTCACTGG
ACTTATGGTACAACCTAACAAAGCAATTGTTGGGGCAAATGCGTTTGCGC
ACGAAAGTGGGATACATCAGGACGGCGTGCTGAAGCATAGGCAGACTTAT
GAGATCATGGATGCCCGTTCAATCGGCCTGTCCGAGAACATCATTGTTCT
GGGCAAGCATTCAGGCCGTCACGCCTTTAAGAAGCGCCTGCAACACATGG
GGTACGAAGTCAACGATGAGGAGCTAGAACGAGCATTCCGGAGATTCAAG
GATTTAGCAGACAAGAAAAAGGTGGTATCAGAATTGGACATTGAGTCTCT
AGTGAACGATGAGGTACGCCATGTTCCAGAAGCGGTCAAGCTTTGTCGCA
TTCAAGTACAATGTGGTGACCACTGTGTCCCAACTGCTACAGTAACGCTG
CAGTTTACTGGAACTGAGGATGAGCATACCATTTCTTCAACTGGAACTGG
TCCAGTCGATGCAGCATTCAATGCTATCAATACGGTTGTTCATGGCAAAG
TTGACGTCGATCTTCAGGAGTTCAGAGTCAGCTCTGTCACAGAAGGAATA
GATGCCCTGGGAGAGGTGGCCGTGAGAGTAACCGACGGCTCCGACGGACG
TCAATACACTGGTTACTCCGCAAACACAGATGTTGTTGTGGCTTCTGCGC
AGGCGTACGTTAATGCCATTAATCGTTGTCAGCTCAGTCGGACGAAACCA
GAGCCGATTCACCCGCAGTTTGGACGCGTATAA

protein sequence of Ggra10391.t1

>Ggra10391.t1 ID=Ggra10391.t1|Name=Ggra10391.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=611bp
MDRSTFVSPIQTLNSASSLWTKPASVNERRPRVFATRRQVRPLQMVVINE
SQTAPSSTTVPKRTPTKHDVATGRDPDRVKIFDTTLRDGEQSPGATLTAD
EKKIIARQLAKLGVDIIEAGFPIASEGDYEAVKAIAKEIGNMHNPPIICG
LARALEKDISRCHDAIKHAAFPRIHTFIATSDLHMAYKLKKTREQVLEIT
TNMVTYARSLCEDVEFSAEDAIRSDPEFLCQVFSRAIEAGATTINVPDTV
GYTTPAEFGALIGYLRQNVRGIDDVTISVHGHDDLGMAVANFLCAVENGA
RQMEVTINGIGERAGNASLEEVVMALYVRRRYYNSRLGRPQESEAPITNI
EHAEIYNTSRMVSNLTGLMVQPNKAIVGANAFAHESGIHQDGVLKHRQTY
EIMDARSIGLSENIIVLGKHSGRHAFKKRLQHMGYEVNDEELERAFRRFK
DLADKKKVVSELDIESLVNDEVRHVPEAVKLCRIQVQCGDHCVPTATVTL
QFTGTEDEHTISSTGTGPVDAAFNAINTVVHGKVDVDLQEFRVSSVTEGI
DALGEVAVRVTDGSDGRQYTGYSANTDVVVASAQAYVNAINRCQLSRTKP
EPIHPQFGRV*

mRNA from alignment at tig00000108_pilon:192680..194512-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10391.t1 ID=Ggra10391.t1|Name=Ggra10391.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1833bp|location=Sequence derived from alignment at tig00000108_pilon:192680..194512- (Gracilaria gracilis GNS1m male)
ATGGATAGGTCGACCTTTGTCTCTCCGATACAGACTCTTAACTCTGCCTC
CTCGCTATGGACCAAACCCGCGTCGGTGAACGAGCGTAGACCGCGCGTGT
TTGCCACTCGTCGTCAAGTGCGCCCTTTACAAATGGTGGTTATCAACGAG
TCGCAAACCGCACCAAGCTCAACCACCGTTCCCAAGCGAACTCCGACCAA
GCACGACGTTGCCACGGGTCGTGACCCGGATCGTGTCAAGATATTTGACA
CCACGCTTCGCGATGGCGAACAGAGCCCTGGAGCTACTCTCACCGCAGAT
GAGAAGAAGATTATTGCAAGGCAGCTCGCCAAACTCGGAGTGGACATTAT
AGAGGCTGGATTCCCCATTGCGTCAGAGGGAGATTACGAGGCTGTGAAAG
CTATTGCGAAGGAGATCGGAAACATGCACAATCCTCCCATCATCTGTGGT
CTCGCTCGTGCGTTAGAGAAGGACATATCCAGATGCCACGACGCCATAAA
GCACGCTGCTTTCCCCAGGATCCATACATTTATTGCTACGTCGGATCTTC
ATATGGCATACAAGCTGAAGAAGACCAGAGAGCAAGTTCTTGAAATTACA
ACGAACATGGTCACCTACGCTAGAAGCCTTTGTGAGGATGTTGAATTCTC
TGCAGAAGATGCCATTCGTTCTGATCCTGAGTTTCTTTGTCAAGTATTCT
CGCGCGCAATCGAGGCAGGCGCTACGACCATCAACGTTCCAGATACTGTC
GGTTATACTACTCCCGCCGAGTTTGGCGCTTTGATAGGGTATCTTCGTCA
AAACGTACGTGGCATAGATGATGTAACTATTTCAGTACATGGCCATGATG
ATCTTGGAATGGCAGTAGCAAACTTTCTGTGCGCGGTAGAGAACGGTGCT
AGACAGATGGAAGTCACAATCAATGGCATTGGCGAGCGCGCTGGAAATGC
GTCCCTGGAGGAAGTTGTGATGGCTCTCTATGTACGTCGTCGATACTACA
ACTCTCGTCTTGGACGACCACAAGAGAGCGAGGCACCAATTACAAACATC
GAGCATGCTGAAATCTACAATACATCCAGAATGGTTTCGAATCTCACTGG
ACTTATGGTACAACCTAACAAAGCAATTGTTGGGGCAAATGCGTTTGCGC
ACGAAAGTGGGATACATCAGGACGGCGTGCTGAAGCATAGGCAGACTTAT
GAGATCATGGATGCCCGTTCAATCGGCCTGTCCGAGAACATCATTGTTCT
GGGCAAGCATTCAGGCCGTCACGCCTTTAAGAAGCGCCTGCAACACATGG
GGTACGAAGTCAACGATGAGGAGCTAGAACGAGCATTCCGGAGATTCAAG
GATTTAGCAGACAAGAAAAAGGTGGTATCAGAATTGGACATTGAGTCTCT
AGTGAACGATGAGGTACGCCATGTTCCAGAAGCGGTCAAGCTTTGTCGCA
TTCAAGTACAATGTGGTGACCACTGTGTCCCAACTGCTACAGTAACGCTG
CAGTTTACTGGAACTGAGGATGAGCATACCATTTCTTCAACTGGAACTGG
TCCAGTCGATGCAGCATTCAATGCTATCAATACGGTTGTTCATGGCAAAG
TTGACGTCGATCTTCAGGAGTTCAGAGTCAGCTCTGTCACAGAAGGAATA
GATGCCCTGGGAGAGGTGGCCGTGAGAGTAACCGACGGCTCCGACGGACG
TCAATACACTGGTTACTCCGCAAACACAGATGTTGTTGTGGCTTCTGCGC
AGGCGTACGTTAATGCCATTAATCGTTGTCAGCTCAGTCGGACGAAACCA
GAGCCGATTCACCCGCAGTTTGGACGCGTATAA

Coding sequence (CDS) from alignment at tig00000108_pilon:192680..194512-

>Ggra10391.t1 ID=Ggra10391.t1|Name=Ggra10391.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1833bp|location=Sequence derived from alignment at tig00000108_pilon:192680..194512- (Gracilaria gracilis GNS1m male)
ATGGATAGGTCGACCTTTGTCTCTCCGATACAGACTCTTAACTCTGCCTC
CTCGCTATGGACCAAACCCGCGTCGGTGAACGAGCGTAGACCGCGCGTGT
TTGCCACTCGTCGTCAAGTGCGCCCTTTACAAATGGTGGTTATCAACGAG
TCGCAAACCGCACCAAGCTCAACCACCGTTCCCAAGCGAACTCCGACCAA
GCACGACGTTGCCACGGGTCGTGACCCGGATCGTGTCAAGATATTTGACA
CCACGCTTCGCGATGGCGAACAGAGCCCTGGAGCTACTCTCACCGCAGAT
GAGAAGAAGATTATTGCAAGGCAGCTCGCCAAACTCGGAGTGGACATTAT
AGAGGCTGGATTCCCCATTGCGTCAGAGGGAGATTACGAGGCTGTGAAAG
CTATTGCGAAGGAGATCGGAAACATGCACAATCCTCCCATCATCTGTGGT
CTCGCTCGTGCGTTAGAGAAGGACATATCCAGATGCCACGACGCCATAAA
GCACGCTGCTTTCCCCAGGATCCATACATTTATTGCTACGTCGGATCTTC
ATATGGCATACAAGCTGAAGAAGACCAGAGAGCAAGTTCTTGAAATTACA
ACGAACATGGTCACCTACGCTAGAAGCCTTTGTGAGGATGTTGAATTCTC
TGCAGAAGATGCCATTCGTTCTGATCCTGAGTTTCTTTGTCAAGTATTCT
CGCGCGCAATCGAGGCAGGCGCTACGACCATCAACGTTCCAGATACTGTC
GGTTATACTACTCCCGCCGAGTTTGGCGCTTTGATAGGGTATCTTCGTCA
AAACGTACGTGGCATAGATGATGTAACTATTTCAGTACATGGCCATGATG
ATCTTGGAATGGCAGTAGCAAACTTTCTGTGCGCGGTAGAGAACGGTGCT
AGACAGATGGAAGTCACAATCAATGGCATTGGCGAGCGCGCTGGAAATGC
GTCCCTGGAGGAAGTTGTGATGGCTCTCTATGTACGTCGTCGATACTACA
ACTCTCGTCTTGGACGACCACAAGAGAGCGAGGCACCAATTACAAACATC
GAGCATGCTGAAATCTACAATACATCCAGAATGGTTTCGAATCTCACTGG
ACTTATGGTACAACCTAACAAAGCAATTGTTGGGGCAAATGCGTTTGCGC
ACGAAAGTGGGATACATCAGGACGGCGTGCTGAAGCATAGGCAGACTTAT
GAGATCATGGATGCCCGTTCAATCGGCCTGTCCGAGAACATCATTGTTCT
GGGCAAGCATTCAGGCCGTCACGCCTTTAAGAAGCGCCTGCAACACATGG
GGTACGAAGTCAACGATGAGGAGCTAGAACGAGCATTCCGGAGATTCAAG
GATTTAGCAGACAAGAAAAAGGTGGTATCAGAATTGGACATTGAGTCTCT
AGTGAACGATGAGGTACGCCATGTTCCAGAAGCGGTCAAGCTTTGTCGCA
TTCAAGTACAATGTGGTGACCACTGTGTCCCAACTGCTACAGTAACGCTG
CAGTTTACTGGAACTGAGGATGAGCATACCATTTCTTCAACTGGAACTGG
TCCAGTCGATGCAGCATTCAATGCTATCAATACGGTTGTTCATGGCAAAG
TTGACGTCGATCTTCAGGAGTTCAGAGTCAGCTCTGTCACAGAAGGAATA
GATGCCCTGGGAGAGGTGGCCGTGAGAGTAACCGACGGCTCCGACGGACG
TCAATACACTGGTTACTCCGCAAACACAGATGTTGTTGTGGCTTCTGCGC
AGGCGTACGTTAATGCCATTAATCGTTGTCAGCTCAGTCGGACGAAACCA
GAGCCGATTCACCCGCAGTTTGGACGCGTATAA