Ggra10390.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10390.t1
Unique NameGgra10390.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:191569..192384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CME124CT
PFAMsCCB2_CCB4
Max annot lvl2759|Eukaryota
Evalue7.37e-12
EggNOG OGs2E9EW@1|root,2SFT0@2759|Eukaryota
DescriptionPfam:DUF2930
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10390Ggra10390Gracilaria gracilis GNS1m malegenetig00000108_pilon 191569..192384 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10390.t1.start1Ggra10390.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 191569..191571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10390.t1.CDS1Ggra10390.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 191569..192384 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10390.t1.exon1Ggra10390.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 191569..192384 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10390.t1.stop1Ggra10390.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 192382..192384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10390.t1Ggra10390.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 191569..192384 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10390.t1 ID=Ggra10390.t1|Name=Ggra10390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=272bp
MRPHLSILPAFCSPLPFSLHRARPARHRLSRTPRAQARPPPKTKPVFYRN
PSKAIEKGGGFYVPGLQGPRLRFVVASLAGTLLTINHFVSTVTASSLANS
ERLATVGVLAVLATAVYDSVRSDDEQPSASTSSEINVPSEFTDQSAIADD
EALSNSGTSSWAMTVCTDLTPATHIAHFRKRLLHAFTDNVAPGALPGEAV
ERVSREARSIYISDTSALPSQVGFPFLAPGIWSVYLVPKDDDVVAFAKQG
KDGLSVEDRRWLGVFVEQYFS*
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spliced messenger RNA

>Ggra10390.t1 ID=Ggra10390.t1|Name=Ggra10390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000108_pilon:191569..192384+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCCCCACTTGTCCATCCTCCCCGCCTTTTGCTCACCCCTGCCATT
CAGCTTACATCGAGCTCGTCCCGCTCGCCATCGATTGAGCCGCACGCCTC
GAGCACAGGCCCGGCCGCCGCCCAAAACCAAACCGGTCTTCTACCGCAAC
CCATCCAAGGCCATCGAGAAAGGTGGAGGCTTTTATGTACCGGGATTGCA
AGGCCCTCGTCTGCGTTTCGTCGTCGCTTCCCTTGCCGGAACTCTGCTCA
CCATCAATCACTTCGTATCCACCGTCACTGCATCGAGTCTGGCCAACTCA
GAGCGTCTGGCCACTGTTGGAGTGCTTGCTGTCCTTGCAACTGCAGTTTA
TGACAGCGTTCGTTCGGACGATGAACAACCGAGCGCATCAACTTCTTCAG
AGATAAATGTGCCTTCTGAGTTTACTGACCAGAGTGCTATTGCTGACGAT
GAAGCGCTTTCCAATTCTGGTACTTCTTCTTGGGCGATGACAGTGTGCAC
AGATTTAACTCCCGCAACCCACATCGCCCACTTTCGGAAGCGGCTTCTGC
ATGCCTTCACGGACAATGTAGCGCCTGGCGCTCTACCGGGAGAAGCAGTA
GAGAGGGTTTCAAGAGAAGCTCGTTCGATTTACATCAGTGACACTTCTGC
CTTGCCTTCGCAGGTCGGGTTTCCATTCTTAGCACCTGGTATCTGGAGTG
TGTATCTTGTACCCAAGGACGACGATGTGGTGGCCTTTGCTAAGCAGGGA
AAGGACGGACTTTCTGTGGAGGATCGACGCTGGCTTGGAGTCTTTGTTGA
ACAGTACTTTTCATGA
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protein sequence of Ggra10390.t1

>Ggra10390.t1 ID=Ggra10390.t1|Name=Ggra10390.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=272bp
MRPHLSILPAFCSPLPFSLHRARPARHRLSRTPRAQARPPPKTKPVFYRN
PSKAIEKGGGFYVPGLQGPRLRFVVASLAGTLLTINHFVSTVTASSLANS
ERLATVGVLAVLATAVYDSVRSDDEQPSASTSSEINVPSEFTDQSAIADD
EALSNSGTSSWAMTVCTDLTPATHIAHFRKRLLHAFTDNVAPGALPGEAV
ERVSREARSIYISDTSALPSQVGFPFLAPGIWSVYLVPKDDDVVAFAKQG
KDGLSVEDRRWLGVFVEQYFS*
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mRNA from alignment at tig00000108_pilon:191569..192384+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10390.t1 ID=Ggra10390.t1|Name=Ggra10390.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000108_pilon:191569..192384+ (Gracilaria gracilis GNS1m male)
ATGAGGCCCCACTTGTCCATCCTCCCCGCCTTTTGCTCACCCCTGCCATT
CAGCTTACATCGAGCTCGTCCCGCTCGCCATCGATTGAGCCGCACGCCTC
GAGCACAGGCCCGGCCGCCGCCCAAAACCAAACCGGTCTTCTACCGCAAC
CCATCCAAGGCCATCGAGAAAGGTGGAGGCTTTTATGTACCGGGATTGCA
AGGCCCTCGTCTGCGTTTCGTCGTCGCTTCCCTTGCCGGAACTCTGCTCA
CCATCAATCACTTCGTATCCACCGTCACTGCATCGAGTCTGGCCAACTCA
GAGCGTCTGGCCACTGTTGGAGTGCTTGCTGTCCTTGCAACTGCAGTTTA
TGACAGCGTTCGTTCGGACGATGAACAACCGAGCGCATCAACTTCTTCAG
AGATAAATGTGCCTTCTGAGTTTACTGACCAGAGTGCTATTGCTGACGAT
GAAGCGCTTTCCAATTCTGGTACTTCTTCTTGGGCGATGACAGTGTGCAC
AGATTTAACTCCCGCAACCCACATCGCCCACTTTCGGAAGCGGCTTCTGC
ATGCCTTCACGGACAATGTAGCGCCTGGCGCTCTACCGGGAGAAGCAGTA
GAGAGGGTTTCAAGAGAAGCTCGTTCGATTTACATCAGTGACACTTCTGC
CTTGCCTTCGCAGGTCGGGTTTCCATTCTTAGCACCTGGTATCTGGAGTG
TGTATCTTGTACCCAAGGACGACGATGTGGTGGCCTTTGCTAAGCAGGGA
AAGGACGGACTTTCTGTGGAGGATCGACGCTGGCTTGGAGTCTTTGTTGA
ACAGTACTTTTCATGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:191569..192384+

>Ggra10390.t1 ID=Ggra10390.t1|Name=Ggra10390.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=816bp|location=Sequence derived from alignment at tig00000108_pilon:191569..192384+ (Gracilaria gracilis GNS1m male)
ATGAGGCCCCACTTGTCCATCCTCCCCGCCTTTTGCTCACCCCTGCCATT
CAGCTTACATCGAGCTCGTCCCGCTCGCCATCGATTGAGCCGCACGCCTC
GAGCACAGGCCCGGCCGCCGCCCAAAACCAAACCGGTCTTCTACCGCAAC
CCATCCAAGGCCATCGAGAAAGGTGGAGGCTTTTATGTACCGGGATTGCA
AGGCCCTCGTCTGCGTTTCGTCGTCGCTTCCCTTGCCGGAACTCTGCTCA
CCATCAATCACTTCGTATCCACCGTCACTGCATCGAGTCTGGCCAACTCA
GAGCGTCTGGCCACTGTTGGAGTGCTTGCTGTCCTTGCAACTGCAGTTTA
TGACAGCGTTCGTTCGGACGATGAACAACCGAGCGCATCAACTTCTTCAG
AGATAAATGTGCCTTCTGAGTTTACTGACCAGAGTGCTATTGCTGACGAT
GAAGCGCTTTCCAATTCTGGTACTTCTTCTTGGGCGATGACAGTGTGCAC
AGATTTAACTCCCGCAACCCACATCGCCCACTTTCGGAAGCGGCTTCTGC
ATGCCTTCACGGACAATGTAGCGCCTGGCGCTCTACCGGGAGAAGCAGTA
GAGAGGGTTTCAAGAGAAGCTCGTTCGATTTACATCAGTGACACTTCTGC
CTTGCCTTCGCAGGTCGGGTTTCCATTCTTAGCACCTGGTATCTGGAGTG
TGTATCTTGTACCCAAGGACGACGATGTGGTGGCCTTTGCTAAGCAGGGA
AAGGACGGACTTTCTGTGGAGGATCGACGCTGGCTTGGAGTCTTTGTTGA
ACAGTACTTTTCATGA
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