Ggra10381.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10381.t1
Unique NameGgra10381.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:135586..137172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118161.KB235922_gene1664
PFAMsBig_5,GSDH,Malectin,TIG
Max annot lvl1117|Cyanobacteria
Evalue1.17e-11
EggNOG OGsCOG2133@1|root,COG2982@1|root,COG3210@1|root,COG2133@2|Bacteria,COG2982@2|Bacteria,COG3210@2|Bacteria,1G17Y@1117|Cyanobacteria
DescriptionGlucose / Sorbosone dehydrogenase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10381Ggra10381Gracilaria gracilis GNS1m malegenetig00000108_pilon 135586..137172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10381.t1Ggra10381.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 135586..137172 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10381.t1.start1Ggra10381.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 135586..135588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10381.t1.CDS1Ggra10381.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 135586..136113 +
Ggra10381.t1.CDS2Ggra10381.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 137053..137172 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10381.t1.exon1Ggra10381.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 135586..136113 +
Ggra10381.t1.exon2Ggra10381.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 137053..137172 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10381.t1.intron1Ggra10381.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 136114..137052 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10381.t1.stop1Ggra10381.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 137170..137172 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10381.t1 ID=Ggra10381.t1|Name=Ggra10381.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=216bp
MSACILAFIAWHVLITQVAGQEWVVDEFKNGDGSPFRGIDGPTVIRQGPD
LRFYVGAKGAVSALTVDDEYRVSDVCTSKSIGAERTVLGLAFDPRHFRED
DILFYIATSHLNWGGGQHGDPALFPGGWKNGKVQIMRSNQDGHCLAVTRD
LVTGLSVSNHDHGVNGMVVDLDGTLKVRVTVGVGRSFSRSYAVDYTYMSD
AAESQLRPHLLEIHS*
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spliced messenger RNA

>Ggra10381.t1 ID=Ggra10381.t1|Name=Ggra10381.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000108_pilon:135586..137172+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGTGTATATTGGCATTCATCGCATGGCATGTGCTAATAACACA
GGTGGCGGGTCAGGAATGGGTGGTGGACGAGTTTAAAAACGGCGATGGGA
GCCCCTTTCGCGGCATTGACGGACCAACGGTGATACGACAGGGACCGGAC
CTGCGCTTCTACGTGGGCGCAAAGGGCGCCGTGAGCGCGCTCACAGTGGA
CGACGAGTACCGCGTGAGTGATGTATGCACCAGCAAGAGCATCGGCGCCG
AGCGCACGGTGCTCGGACTGGCATTCGACCCGCGACACTTTCGCGAGGAC
GACATCTTGTTTTATATTGCGACGTCGCACCTCAATTGGGGCGGCGGGCA
GCACGGCGACCCGGCGCTGTTCCCCGGCGGGTGGAAGAACGGCAAGGTGC
AAATCATGCGCTCCAACCAAGACGGGCACTGCCTGGCGGTGACGAGGGAC
CTGGTGACCGGGCTGTCGGTGTCCAACCACGACCACGGCGTGAACGGGAT
GGTGGTAGACTTGGACGGCACGCTCAAGGTGCGCGTTACCGTCGGCGTCG
GCCGCTCCTTCTCCCGCAGCTACGCCGTCGACTACACGTACATGAGCGAC
GCCGCCGAGTCGCAGCTCAGGCCGCACCTTTTGGAGATACATTCCTAG
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protein sequence of Ggra10381.t1

>Ggra10381.t1 ID=Ggra10381.t1|Name=Ggra10381.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=216bp
MSACILAFIAWHVLITQVAGQEWVVDEFKNGDGSPFRGIDGPTVIRQGPD
LRFYVGAKGAVSALTVDDEYRVSDVCTSKSIGAERTVLGLAFDPRHFRED
DILFYIATSHLNWGGGQHGDPALFPGGWKNGKVQIMRSNQDGHCLAVTRD
LVTGLSVSNHDHGVNGMVVDLDGTLKVRVTVGVGRSFSRSYAVDYTYMSD
AAESQLRPHLLEIHS*
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mRNA from alignment at tig00000108_pilon:135586..137172+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10381.t1 ID=Ggra10381.t1|Name=Ggra10381.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1587bp|location=Sequence derived from alignment at tig00000108_pilon:135586..137172+ (Gracilaria gracilis GNS1m male)
ATGAGCGCGTGTATATTGGCATTCATCGCATGGCATGTGCTAATAACACA
GGTGGCGGGTCAGGAATGGGTGGTGGACGAGTTTAAAAACGGCGATGGGA
GCCCCTTTCGCGGCATTGACGGACCAACGGTGATACGACAGGGACCGGAC
CTGCGCTTCTACGTGGGCGCAAAGGGCGCCGTGAGCGCGCTCACAGTGGA
CGACGAGTACCGCGTGAGTGATGTATGCACCAGCAAGAGCATCGGCGCCG
AGCGCACGGTGCTCGGACTGGCATTCGACCCGCGACACTTTCGCGAGGAC
GACATCTTGTTTTATATTGCGACGTCGCACCTCAATTGGGGCGGCGGGCA
GCACGGCGACCCGGCGCTGTTCCCCGGCGGGTGGAAGAACGGCAAGGTGC
AAATCATGCGCTCCAACCAAGACGGGCACTGCCTGGCGGTGACGAGGGAC
CTGGTGACCGGGCTGTCGGTGTCCAACCACGACCACGGCGTGAACGGGAT
GGTGGTAGACTTGGACGGCACGCTCAAGGTACACAACGGCGGCATGACGA
ACGCCGGCTTctccgagaagggcgacggcgacggcggggcgccggaaaca
ccgctgtccggggcgctgctgacggtgcggcacaacattgaggggtttgt
gggcgatgtggagtacgacacgcacgacggacggcaggcgcgcatctcca
acgcgcccaacgtgtcggtgttcgcggccggcttcatgaacgcgttcccc
gtggagctgcacacgaacggcgggctgtacgtgacggacaacggccccaa
cccggggtacggcaaggagagcgtgtcttgtagcgacaacctgcagacgg
agccgcacgcgcgcgacacgctgcacttggcggagctgggcaagtggtac
gggcacgcgaaccgcaaccgcgggcggtacgacgccaagcaatgcgtgta
ccagggcgaagggcgcacggcggcgctgacgacgatggagtcgtccacca
acggtctggtggagtacgccagcaacaagcgcggcgcgcggtggaacggg
gcgctgatgctggcgcgcatcgggttccacggcggcgacaacgaccgcgg
caacagcttcgcgctgttcctgtccgacaagcgcacggtgcgggagcgcg
aggaggtggcggcagcgggcggactggacgccacgctggacatgcacgcc
aacgtggtgctgacggactacatggtgcgcgcgctggtggtgctgcgcag
cgaggaggcggcgggcgtgcggcggcagcgcgcggcggtgtggcgcgtgt
ttccgcggcgcgggccggcgcgcggcggcaaccgcgtgtgggtgcgcggg
cgctttgcgcagcgcgcgctcacggtgatgtttggcagccgcgcgtgcgc
cgacgtgcgcgtgttgcgcgccgggctgctgcactgccgcgtgccgcgcg
gcgtcggcgCGCAGCAGGTGCGCGTTACCGTCGGCGTCGGCCGCTCCTTC
TCCCGCAGCTACGCCGTCGACTACACGTACATGAGCGACGCCGCCGAGTC
GCAGCTCAGGCCGCACCTTTTGGAGATACATTCCTAG
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Coding sequence (CDS) from alignment at tig00000108_pilon:135586..137172+

>Ggra10381.t1 ID=Ggra10381.t1|Name=Ggra10381.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=648bp|location=Sequence derived from alignment at tig00000108_pilon:135586..137172+ (Gracilaria gracilis GNS1m male)
ATGAGCGCGTGTATATTGGCATTCATCGCATGGCATGTGCTAATAACACA
GGTGGCGGGTCAGGAATGGGTGGTGGACGAGTTTAAAAACGGCGATGGGA
GCCCCTTTCGCGGCATTGACGGACCAACGGTGATACGACAGGGACCGGAC
CTGCGCTTCTACGTGGGCGCAAAGGGCGCCGTGAGCGCGCTCACAGTGGA
CGACGAGTACCGCGTGAGTGATGTATGCACCAGCAAGAGCATCGGCGCCG
AGCGCACGGTGCTCGGACTGGCATTCGACCCGCGACACTTTCGCGAGGAC
GACATCTTGTTTTATATTGCGACGTCGCACCTCAATTGGGGCGGCGGGCA
GCACGGCGACCCGGCGCTGTTCCCCGGCGGGTGGAAGAACGGCAAGGTGC
AAATCATGCGCTCCAACCAAGACGGGCACTGCCTGGCGGTGACGAGGGAC
CTGGTGACCGGGCTGTCGGTGTCCAACCACGACCACGGCGTGAACGGGAT
GGTGGTAGACTTGGACGGCACGCTCAAGGTGCGCGTTACCGTCGGCGTCG
GCCGCTCCTTCTCCCGCAGCTACGCCGTCGACTACACGTACATGAGCGAC
GCCGCCGAGTCGCAGCTCAGGCCGCACCTTTTGGAGATACATTCCTAG
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