Ggra10380.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10380.t1
Unique NameGgra10380.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length533
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:132220..134211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9646.ENSAMEP00000005067
Preferred nameGRIK5
PFAMsANF_receptor,Lig_chan,Lig_chan-Glu_bd
Max annot lvl33208|Metazoa
KEGG koko:K05204,ko:K05205
KEGG TC1.A.10.1,1.A.10.1.9
KEGG Pathwayko04080,ko04724,map04080,map04724
GOsGO:0001505,GO:0001678,GO:0003008,GO:0003674,GO:0004888,GO:0004970,GO:0005215,GO:0005216,GO:0005230,GO:0005261,GO:0005267,GO:0005272,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006621,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0007154,GO:0007165,GO:0007166,GO:0007215,GO:0007267,GO:0007268,GO:0008066,GO:0008104,GO:0008150,GO:0008324,GO:0008328,GO:0009743,GO:0009746,GO:0009749,GO:0009987,GO:0010033,GO:0010646,GO:0010941,GO:0010942,GO:0012505,GO:0014069,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015267,GO:0015276,GO:0015277,GO:0015318,GO:0015672,GO:0016020,GO:0016021,GO:0017124,GO:0017157,GO:0017158,GO:0019725,GO:0019904,GO:0022803,GO:0022824,GO:0022834,GO:0022835,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0030001,GO:0030165,GO:0030424,GO:0030425,GO:0030594,GO:0031224,GO:0031226,GO:0031338,GO:0031630,GO:0032279,GO:0032386,GO:0032501,GO:0032507,GO:0032879,GO:0032983,GO:0032991,GO:0033036,GO:0033043,GO:0033267,GO:0033365,GO:0033500,GO:0034220,GO:0034284,GO:0034613,GO:0034702,GO:0034703,GO:0034705,GO:0034706,GO:0035235,GO:0035249,GO:0035437,GO:0035725,GO:0036477,GO:0038023,GO:0042221,GO:0042391,GO:0042592,GO:0042593,GO:0042734,GO:0042802,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043113,GO:0043195,GO:0043204,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043235,GO:0043523,GO:0043525,GO:0043679,GO:0044297,GO:0044306,GO:0044424,GO:0044425,GO:0044444,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045185,GO:0045202,GO:0045211,GO:0046873,GO:0046928,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050804,GO:0050877,GO:0050896,GO:0051046,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051235,GO:0051588,GO:0051641,GO:0051649,GO:0051651,GO:0051668,GO:0051716,GO:0055082,GO:0055085,GO:0060078,GO:0060079,GO:0060089,GO:0060341,GO:0060627,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071804,GO:0071805,GO:0071944,GO:0072595,GO:0072657,GO:0097060,GO:0097447,GO:0097458,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098693,GO:0098793,GO:0098794,GO:0098796,GO:0098797,GO:0098802,GO:0098878,GO:0098916,GO:0098984,GO:0099094,GO:0099177,GO:0099536,GO:0099537,GO:0099565,GO:0099572,GO:0120025,GO:0120038,GO:0150034,GO:1901214,GO:1901216,GO:1901700,GO:1901701,GO:1902495,GO:1902803,GO:1903305,GO:1903530,GO:1905114,GO:1990351,GO:2000300
Evalue0.000209
EggNOG OGsKOG1052@1|root,KOG1052@2759|Eukaryota,38H6K@33154|Opisthokonta,3BHAW@33208|Metazoa,3CUWS@33213|Bilateria,488EF@7711|Chordata,490N3@7742|Vertebrata,3JC6N@40674|Mammalia,3ETK3@33554|Carnivora
DescriptionGlutamate receptor, ionotropic, kainate 5
COG categoryEPT
BRITEko00000,ko00001,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10380Ggra10380Gracilaria gracilis GNS1m malegenetig00000108_pilon 132220..134211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10380.t1Ggra10380.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 132220..134211 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10380.t1.start1Ggra10380.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 132220..132222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10380.t1.CDS1Ggra10380.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 132220..132267 +
Ggra10380.t1.CDS2Ggra10380.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 132354..132882 +
Ggra10380.t1.CDS3Ggra10380.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000108_pilon 133011..133140 +
Ggra10380.t1.CDS4Ggra10380.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000108_pilon 133235..133375 +
Ggra10380.t1.CDS5Ggra10380.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000108_pilon 133461..134211 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10380.t1.exon1Ggra10380.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 132220..132267 +
Ggra10380.t1.exon2Ggra10380.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 132354..132882 +
Ggra10380.t1.exon3Ggra10380.t1.exon3Gracilaria gracilis GNS1m maleexontig00000108_pilon 133011..133140 +
Ggra10380.t1.exon4Ggra10380.t1.exon4Gracilaria gracilis GNS1m maleexontig00000108_pilon 133235..133375 +
Ggra10380.t1.exon5Ggra10380.t1.exon5Gracilaria gracilis GNS1m maleexontig00000108_pilon 133461..134211 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10380.t1.intron1Ggra10380.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 132268..132353 +
Ggra10380.t1.intron2Ggra10380.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000108_pilon 132883..133010 +
Ggra10380.t1.intron3Ggra10380.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000108_pilon 133141..133234 +
Ggra10380.t1.intron4Ggra10380.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000108_pilon 133376..133460 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10380.t1.stop1Ggra10380.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 134209..134211 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10380.t1 ID=Ggra10380.t1|Name=Ggra10380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=533bp
MEEPPISFQNSRNNWNNGLDGVIKEHLLQHQSYLNWTCSSMLPFRHSDGT
DFNAFVSAMHQCTNKSTGQIIQSPQCQCDIGIGGWFQNPARFGKVTFLPP
FGYDRYVVFTHVSQATVSGKRWFFLQTFDASAWICIVAMFVMFTLLKMLD
QRFEPDAQYTPLPSTTSRLRRRVHFLTKSRPLYRLRKATQSTVMRALMLS
DEHIVAGGSTTRQWFLNMILAVASLFLILSYEASMTASLVQESIETRFHS
AADLQNCRIEPSEICILRGGAFETYWNVSIAVGKCHMQNPPQLFSSYETL
YEAVENGRCSYAIVIESAITSAIRERFCGHFVIVGEPIFNGGLSMLLPIG
SKLTENMSLTTLALQGNQTEPSLSKYFNTLPRCEAEMNSMLSFDKLRLFF
VILFSLGAIILLAMVLIPQHSFREGASTQTRSARSACTEQILERKKMPVW
DAYGGEAREAALGHDWLAHRVGIGAQYSQFVRASRADVLTYADGWWDWRA
NCVELPGSMPWVTLAPDSESDEFEADSGDKAA*
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spliced messenger RNA

>Ggra10380.t1 ID=Ggra10380.t1|Name=Ggra10380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1599bp|location=Sequence derived from alignment at tig00000108_pilon:132220..134211+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAGCCTCCCATATCCTTTCAGAACAGTCGCAACAATTGGAATAA
TGGGCTGGATGGGGTAATCAAGGAACACTTGCTTCAGCATCAGTCGTACC
TCAACTGGACCTGCTCCTCTATGCTTCCCTTCCGCCATAGCGATGGTACA
GATTTCAATGCATTCGTGTCTGCCATGCACCAATGTACAAACAAATCAAC
GGGACAGATAATACAATCGCCACAGTGCCAGTGCGATATTGGCATCGGCG
GTTGGTTTCAGAACCCCGCCCGCTTTGGAAAGGTCACCTTCTTGCCTCCA
TTTGGGTACGACCGATACGTGGTGTTCACACACGTTTCTCAGGCCACCGT
GTCTGGAAAAAGGTGGTTCTTCCTTCAGACCTTTGACGCCAGCGCTTGGA
TCTGCATTGTCGCCATGTTCGTCATGTTTACACTCTTGAAGATGCTCGAC
CAAAGATTCGAACCAGATGCTCAGTACACACCGCTTCCGTCCACCACCAG
CAGACTCCGACGCCGTGTGCATTTTCTCACCAAGAGTCGTCCACTGTATC
GACTTAGGAAAGCCACTCAAAGTACAGTGATGAGAGCGTTGATGCTTTCC
GACGAGCATATCGTGGCAGGTGGAAGCACCACGCGTCAATGGTTTCTCAA
CATGATTCTGGCAGTAGCTTCCCTCTTTCTCATATTATCTTACGAGGCGA
GTATGACCGCATCGCTTGTACAGGAATCGATAGAGACCAGATTTCACTCG
GCTGCGGATCTTCAGAATTGCCGAATCGAGCCTTCGGAAATTTGCATCCT
TCGAGGAGGGGCGTTTGAAACGTATTGGAACGTCTCAATTGCGGTCGGCA
AGTGTCACATGCAGAATCCACCGCAGTTGTTCAGTTCATACGAGACTCTG
TACGAAGCGGTGGAGAATGGGCGGTGCAGCTATGCGATCGTGATAGAGTC
TGCCATCACCAGCGCAATTCGAGAAAGGTTCTGCGGCCATTTCGTGATTG
TGGGTGAACCGATCTTCAACGGTGGTCTTTCAATGCTGCTTCCCATAGGC
AGCAAACTGACAGAGAACATGAGTCTGACCACGCTTGCACTGCAAGGAAA
TCAGACAGAGCCTTCCCTGAGCAAGTACTTCAACACTCTGCCGCGGTGCG
AAGCAGAAATGAATAGCATGCTGAGCTTTGACAAGCTTCGGCTGTTCTTC
GTGATCCTGTTCTCGTTGGGGGCGATAATCTTGCTGGCGATGGTGCTCAT
TCCACAGCACTCGTTCAGAGAAGGCGCAAGCACTCAGACACGAAGCGCAC
GTAGCGCGTGTACAGAGCAGATATTGGAGCGGAAGAAGATGCCAGTATGG
GACGCCTACGGCGGCGAAGCACGAGAAGCAGCGCTTGGGCACGACTGGCT
GGCGCATAGGGTGGGAATAGGGGCGCAGTACTCGCAATTTGTGCGTGCAA
GCAGAGCCGACGTATTGACGTACGCAGACGGGTGGTGGGACTGGCGCGCG
AATTGCGTGGAACTGCCGGGGTCGATGCCGTGGGTGACGCTTGCACCGGA
CTCGGAAAGCGACGAGTTTGAGGCCGACTCGGGCGACAAAGCAGCGTGA
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protein sequence of Ggra10380.t1

>Ggra10380.t1 ID=Ggra10380.t1|Name=Ggra10380.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=533bp
MEEPPISFQNSRNNWNNGLDGVIKEHLLQHQSYLNWTCSSMLPFRHSDGT
DFNAFVSAMHQCTNKSTGQIIQSPQCQCDIGIGGWFQNPARFGKVTFLPP
FGYDRYVVFTHVSQATVSGKRWFFLQTFDASAWICIVAMFVMFTLLKMLD
QRFEPDAQYTPLPSTTSRLRRRVHFLTKSRPLYRLRKATQSTVMRALMLS
DEHIVAGGSTTRQWFLNMILAVASLFLILSYEASMTASLVQESIETRFHS
AADLQNCRIEPSEICILRGGAFETYWNVSIAVGKCHMQNPPQLFSSYETL
YEAVENGRCSYAIVIESAITSAIRERFCGHFVIVGEPIFNGGLSMLLPIG
SKLTENMSLTTLALQGNQTEPSLSKYFNTLPRCEAEMNSMLSFDKLRLFF
VILFSLGAIILLAMVLIPQHSFREGASTQTRSARSACTEQILERKKMPVW
DAYGGEAREAALGHDWLAHRVGIGAQYSQFVRASRADVLTYADGWWDWRA
NCVELPGSMPWVTLAPDSESDEFEADSGDKAA*
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mRNA from alignment at tig00000108_pilon:132220..134211+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10380.t1 ID=Ggra10380.t1|Name=Ggra10380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1992bp|location=Sequence derived from alignment at tig00000108_pilon:132220..134211+ (Gracilaria gracilis GNS1m male)
ATGGAAGAGCCTCCCATATCCTTTCAGAACAGTCGCAACAATTGGAATGT
ATGTTGTTCACTTCACTCTTTCTGTAACCGTTTGCTTCTCCTACTCACTT
CACTTGCTTGATTCATGTTCTCAACCTTGAAAAGAATGGGCTGGATGGGG
TAATCAAGGAACACTTGCTTCAGCATCAGTCGTACCTCAACTGGACCTGC
TCCTCTATGCTTCCCTTCCGCCATAGCGATGGTACAGATTTCAATGCATT
CGTGTCTGCCATGCACCAATGTACAAACAAATCAACGGGACAGATAATAC
AATCGCCACAGTGCCAGTGCGATATTGGCATCGGCGGTTGGTTTCAGAAC
CCCGCCCGCTTTGGAAAGGTCACCTTCTTGCCTCCATTTGGGTACGACCG
ATACGTGGTGTTCACACACGTTTCTCAGGCCACCGTGTCTGGAAAAAGGT
GGTTCTTCCTTCAGACCTTTGACGCCAGCGCTTGGATCTGCATTGTCGCC
ATGTTCGTCATGTTTACACTCTTGAAGATGCTCGACCAAAGATTCGAACC
AGATGCTCAGTACACACCGCTTCCGTCCACCACCAGCAGACTCCGACGCC
GTGTGCATTTTCTCACCAAGAGTCGTCCACTGTATCGACTTAGGAAAGCC
ACTCAAAGTACAGGTGCGTTCTATTGTTTATATCTTCACTTGGATATATG
TAACATGCAAATCTGACTTACACTTTGTTTGTATACTGTAATATACATAT
TATGTACCGAATGTTGTTGCGTTGATTGCGAGTGAGGTTAGTGATGAGAG
CGTTGATGCTTTCCGACGAGCATATCGTGGCAGGTGGAAGCACCACGCGT
CAATGGTTTCTCAACATGATTCTGGCAGTAGCTTCCCTCTTTCTCATATT
ATCTTACGAGGCGAGTATGACGTAAGTGCCGCGCCACCGTTTTGTACTTG
TGTTGCAATTGAGGAAAGCCATGGCGCTAACGTTGACCACCATTGTATGC
CGTTCATTGTTCCAGCGCATCGCTTGTACAGGAATCGATAGAGACCAGAT
TTCACTCGGCTGCGGATCTTCAGAATTGCCGAATCGAGCCTTCGGAAATT
TGCATCCTTCGAGGAGGGGCGTTTGAAACGTATTGGAACGTCTCAATTGC
GGTCGGGTACGTTGCGTGTTATTTGCTGTGGTTGAAAGCGATTGGAAATG
GTATGCAAAGAAGTCTAACCGATTTGTGTTGCTTACCATAGCAAGTGTCA
CATGCAGAATCCACCGCAGTTGTTCAGTTCATACGAGACTCTGTACGAAG
CGGTGGAGAATGGGCGGTGCAGCTATGCGATCGTGATAGAGTCTGCCATC
ACCAGCGCAATTCGAGAAAGGTTCTGCGGCCATTTCGTGATTGTGGGTGA
ACCGATCTTCAACGGTGGTCTTTCAATGCTGCTTCCCATAGGCAGCAAAC
TGACAGAGAACATGAGTCTGACCACGCTTGCACTGCAAGGAAATCAGACA
GAGCCTTCCCTGAGCAAGTACTTCAACACTCTGCCGCGGTGCGAAGCAGA
AATGAATAGCATGCTGAGCTTTGACAAGCTTCGGCTGTTCTTCGTGATCC
TGTTCTCGTTGGGGGCGATAATCTTGCTGGCGATGGTGCTCATTCCACAG
CACTCGTTCAGAGAAGGCGCAAGCACTCAGACACGAAGCGCACGTAGCGC
GTGTACAGAGCAGATATTGGAGCGGAAGAAGATGCCAGTATGGGACGCCT
ACGGCGGCGAAGCACGAGAAGCAGCGCTTGGGCACGACTGGCTGGCGCAT
AGGGTGGGAATAGGGGCGCAGTACTCGCAATTTGTGCGTGCAAGCAGAGC
CGACGTATTGACGTACGCAGACGGGTGGTGGGACTGGCGCGCGAATTGCG
TGGAACTGCCGGGGTCGATGCCGTGGGTGACGCTTGCACCGGACTCGGAA
AGCGACGAGTTTGAGGCCGACTCGGGCGACAAAGCAGCGTGA
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Coding sequence (CDS) from alignment at tig00000108_pilon:132220..134211+

>Ggra10380.t1 ID=Ggra10380.t1|Name=Ggra10380.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1599bp|location=Sequence derived from alignment at tig00000108_pilon:132220..134211+ (Gracilaria gracilis GNS1m male)
ATGGAAGAGCCTCCCATATCCTTTCAGAACAGTCGCAACAATTGGAATAA
TGGGCTGGATGGGGTAATCAAGGAACACTTGCTTCAGCATCAGTCGTACC
TCAACTGGACCTGCTCCTCTATGCTTCCCTTCCGCCATAGCGATGGTACA
GATTTCAATGCATTCGTGTCTGCCATGCACCAATGTACAAACAAATCAAC
GGGACAGATAATACAATCGCCACAGTGCCAGTGCGATATTGGCATCGGCG
GTTGGTTTCAGAACCCCGCCCGCTTTGGAAAGGTCACCTTCTTGCCTCCA
TTTGGGTACGACCGATACGTGGTGTTCACACACGTTTCTCAGGCCACCGT
GTCTGGAAAAAGGTGGTTCTTCCTTCAGACCTTTGACGCCAGCGCTTGGA
TCTGCATTGTCGCCATGTTCGTCATGTTTACACTCTTGAAGATGCTCGAC
CAAAGATTCGAACCAGATGCTCAGTACACACCGCTTCCGTCCACCACCAG
CAGACTCCGACGCCGTGTGCATTTTCTCACCAAGAGTCGTCCACTGTATC
GACTTAGGAAAGCCACTCAAAGTACAGTGATGAGAGCGTTGATGCTTTCC
GACGAGCATATCGTGGCAGGTGGAAGCACCACGCGTCAATGGTTTCTCAA
CATGATTCTGGCAGTAGCTTCCCTCTTTCTCATATTATCTTACGAGGCGA
GTATGACCGCATCGCTTGTACAGGAATCGATAGAGACCAGATTTCACTCG
GCTGCGGATCTTCAGAATTGCCGAATCGAGCCTTCGGAAATTTGCATCCT
TCGAGGAGGGGCGTTTGAAACGTATTGGAACGTCTCAATTGCGGTCGGCA
AGTGTCACATGCAGAATCCACCGCAGTTGTTCAGTTCATACGAGACTCTG
TACGAAGCGGTGGAGAATGGGCGGTGCAGCTATGCGATCGTGATAGAGTC
TGCCATCACCAGCGCAATTCGAGAAAGGTTCTGCGGCCATTTCGTGATTG
TGGGTGAACCGATCTTCAACGGTGGTCTTTCAATGCTGCTTCCCATAGGC
AGCAAACTGACAGAGAACATGAGTCTGACCACGCTTGCACTGCAAGGAAA
TCAGACAGAGCCTTCCCTGAGCAAGTACTTCAACACTCTGCCGCGGTGCG
AAGCAGAAATGAATAGCATGCTGAGCTTTGACAAGCTTCGGCTGTTCTTC
GTGATCCTGTTCTCGTTGGGGGCGATAATCTTGCTGGCGATGGTGCTCAT
TCCACAGCACTCGTTCAGAGAAGGCGCAAGCACTCAGACACGAAGCGCAC
GTAGCGCGTGTACAGAGCAGATATTGGAGCGGAAGAAGATGCCAGTATGG
GACGCCTACGGCGGCGAAGCACGAGAAGCAGCGCTTGGGCACGACTGGCT
GGCGCATAGGGTGGGAATAGGGGCGCAGTACTCGCAATTTGTGCGTGCAA
GCAGAGCCGACGTATTGACGTACGCAGACGGGTGGTGGGACTGGCGCGCG
AATTGCGTGGAACTGCCGGGGTCGATGCCGTGGGTGACGCTTGCACCGGA
CTCGGAAAGCGACGAGTTTGAGGCCGACTCGGGCGACAAAGCAGCGTGA
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