Ggra10375.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10375.t1
Unique NameGgra10375.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000108_piloncontigtig00000108_pilon:61876..63563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH144CT
Preferred nameSBE1
PFAMsAlpha-amylase,Alpha-amylase_C,CBM_48
Max annot lvl2759|Eukaryota
KEGG koko:K00700
KEGG ReactionR02110
KEGG Pathwayko00500,ko01100,ko01110,map00500,map01100,map01110
KEGG ModuleM00565
GOsGO:0000271,GO:0001678,GO:0003674,GO:0003824,GO:0003844,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005982,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009314,GO:0009416,GO:0009501,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009750,GO:0009987,GO:0010021,GO:0010033,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0019725,GO:0033500,GO:0033692,GO:0034284,GO:0034285,GO:0034637,GO:0034645,GO:0042221,GO:0042592,GO:0042593,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048878,GO:0050896,GO:0051716,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071214,GO:0071310,GO:0071322,GO:0071324,GO:0071326,GO:0071329,GO:0071331,GO:0071332,GO:0071333,GO:0071478,GO:0071482,GO:0071704,GO:0104004,GO:1901135,GO:1901137,GO:1901576,GO:1901700,GO:1901701,GO:2000896
Evalue6.65e-219
EggNOG OGsCOG0296@1|root,KOG0470@2759|Eukaryota
EC2.4.1.18
Description1,4-alpha-glucan branching enzyme activity
COG categoryG
CAZyCBM48,GH13
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10375Ggra10375Gracilaria gracilis GNS1m malegenetig00000108_pilon 61876..63563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10375.t1Ggra10375.t1Gracilaria gracilis GNS1m malepolypeptidetig00000108_pilon 61876..63563 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10375.t1.stop1Ggra10375.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000108_pilon 61876..61878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10375.t1.CDS1Ggra10375.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000108_pilon 61876..62855 -
Ggra10375.t1.CDS2Ggra10375.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000108_pilon 62930..63563 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10375.t1.exon1Ggra10375.t1.exon1Gracilaria gracilis GNS1m maleexontig00000108_pilon 61876..62855 -
Ggra10375.t1.exon2Ggra10375.t1.exon2Gracilaria gracilis GNS1m maleexontig00000108_pilon 62930..63563 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10375.t1.intron1Ggra10375.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000108_pilon 62856..62929 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10375.t1.start1Ggra10375.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000108_pilon 63561..63563 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10375.t1 ID=Ggra10375.t1|Name=Ggra10375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=538bp
MGSNDLKVGSYREFADNVLPRIKETGYTALQIMYITERAYYASFGYHVTN
FFAISSRCGQPEDLNYLINKVHQLGLYVLMDVVHSHASSKSMDGINNFDG
TDHQYFHEGERGRHSLWASRLFNYGNWEVLRFLLSNLRWYMEEYHFDGFR
FDGIISMLYLHSGIGVQFTGNYSKYFGFQVDVDACVYMMLANKLLHDLYP
DVALTIAEDVSEVLEKEKDGNWKMGNVVFTLTNRRWNEKFIGYCESHDQA
LVGDKTIAFWLMDAAMYTDMSCNGYPTPVIERGIALHKMIRLLTMCLSGE
GYLTFMGNEFGLPEWIDFPREGNGNSYQHARRRWDLCNNEALRYRHLYQF
EKMMHALDNEHPICRFQAHQYMVLQQEGNKLIAVKKGDRLLFVFNFHHSQ
SYSDYRIGTYWAGRYKLVLDSDGTNTGGHGRVYWDVVHTTSTEAWYNRPY
FLQLNVPARTCQVYYCFETWEEEREKGEKAKQTTKKAESAVDCAKEKAST
EVEEVAAVAVKNDETVRLNGSQKAPGKRQEKVVAGKA*
back to top

spliced messenger RNA

>Ggra10375.t1 ID=Ggra10375.t1|Name=Ggra10375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00000108_pilon:61876..63563- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTCTAATGATCTCAAGGTTGGCTCATATCGTGAGTTTGCAGATAA
TGTGTTACCACGTATTAAGGAAACGGGTTATACTGCCTTACAGATTATGT
ACATTACGGAACGTGCGTACTATGCTAGCTTTGGCTACCACGTCACCAAT
TTCTTTGCGATTAGTTCCAGATGCGGCCAACCGGAGGATCTTAACTACCT
CATAAACAAGGTGCATCAGCTTGGATTGTATGTGCTTATGGATGTAGTCC
ACTCTCATGCATCGAGCAAATCTATGGATGGTATTAACAACTTTGATGGC
ACTGACCATCAATACTTTCATGAAGGTGAGCGGGGGCGACATTCTTTGTG
GGCTTCTAGACTTTTCAACTACGGTAACTGGGAAGTGCTCCGTTTCCTCT
TATCCAACCTCAGATGGTACATGGAGGAGTATCACTTTGACGGTTTCCGT
TTTGATGGCATCATATCAATGCTGTACTTGCATTCTGGAATTGGCGTGCA
GTTTACTGGTAACTATAGCAAGTACTTTGGTTTCCAAGTTGATGTTGATG
CATGCGTTTACATGATGCTCGCTAACAAGCTTTTACATGACCTTTACCCT
GATGTGGCACTTACCATCGCAGAAGATGTGAGTGAGGTCTTGGAAAAAGA
AAAGGATGGAAACTGGAAGATGGGCAACGTGGTTTTCACTCTTACAAATC
GTCGTTGGAACGAGAAGTTCATAGGATACTGCGAAAGTCATGATCAGGCA
CTGGTGGGAGACAAAACCATCGCGTTCTGGTTGATGGACGCGGCGATGTA
TACTGACATGAGTTGTAATGGCTATCCCACACCCGTAATCGAGCGAGGCA
TCGCTCTTCACAAAATGATTCGATTGCTCACAATGTGCTTGTCTGGCGAG
GGATACCTTACGTTCATGGGAAACGAATTTGGGCTCCCAGAATGGATTGA
TTTTCCGCGTGAAGGAAACGGTAACTCGTACCAACATGCGCGTCGCCGAT
GGGATCTTTGCAACAATGAGGCTCTTCGTTACAGGCACTTATACCAATTT
GAGAAAATGATGCATGCTTTGGATAATGAACATCCCATCTGTCGATTCCA
GGCGCACCAGTACATGGTGCTTCAACAAGAAGGCAACAAGCTGATTGCGG
TTAAAAAGGGTGATAGGTTGCTGTTCGTGTTCAACTTTCACCATTCGCAG
TCGTACAGTGACTATCGAATTGGAACATACTGGGCGGGTCGATACAAACT
TGTTCTTGATTCAGATGGCACGAACACTGGTGGACATGGTCGGGTATATT
GGGATGTGGTACATACTACTAGTACTGAGGCCTGGTATAATCGACCATAC
TTCTTGCAGTTAAACGTCCCAGCGAGGACATGTCAAGTGTACTATTGCTT
CGAAACCTGGGAAGAGGAGAGAGAGAAAGGGGAGAAGGCCAAACAGACTA
CCAAAAAGGCAGAGAGTGCGGTTGATTGTGCGAAAGAAAAAGCTAGTACG
GAAGTTGAGGAGGTTGCAGCGGTCGCAGTCAAGAATGACGAGACAGTGCG
CTTGAACGGCTCACAAAAAGCCCCGGGGAAGCGACAGGAGAAGGTTGTAG
CTGGGAAAGCGTAG
back to top

protein sequence of Ggra10375.t1

>Ggra10375.t1 ID=Ggra10375.t1|Name=Ggra10375.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=538bp
MGSNDLKVGSYREFADNVLPRIKETGYTALQIMYITERAYYASFGYHVTN
FFAISSRCGQPEDLNYLINKVHQLGLYVLMDVVHSHASSKSMDGINNFDG
TDHQYFHEGERGRHSLWASRLFNYGNWEVLRFLLSNLRWYMEEYHFDGFR
FDGIISMLYLHSGIGVQFTGNYSKYFGFQVDVDACVYMMLANKLLHDLYP
DVALTIAEDVSEVLEKEKDGNWKMGNVVFTLTNRRWNEKFIGYCESHDQA
LVGDKTIAFWLMDAAMYTDMSCNGYPTPVIERGIALHKMIRLLTMCLSGE
GYLTFMGNEFGLPEWIDFPREGNGNSYQHARRRWDLCNNEALRYRHLYQF
EKMMHALDNEHPICRFQAHQYMVLQQEGNKLIAVKKGDRLLFVFNFHHSQ
SYSDYRIGTYWAGRYKLVLDSDGTNTGGHGRVYWDVVHTTSTEAWYNRPY
FLQLNVPARTCQVYYCFETWEEEREKGEKAKQTTKKAESAVDCAKEKAST
EVEEVAAVAVKNDETVRLNGSQKAPGKRQEKVVAGKA*
back to top

mRNA from alignment at tig00000108_pilon:61876..63563-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10375.t1 ID=Ggra10375.t1|Name=Ggra10375.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1688bp|location=Sequence derived from alignment at tig00000108_pilon:61876..63563- (Gracilaria gracilis GNS1m male)
ATGGGGTCTAATGATCTCAAGGTTGGCTCATATCGTGAGTTTGCAGATAA
TGTGTTACCACGTATTAAGGAAACGGGTTATACTGCCTTACAGATTATGT
ACATTACGGAACGTGCGTACTATGCTAGCTTTGGCTACCACGTCACCAAT
TTCTTTGCGATTAGTTCCAGATGCGGCCAACCGGAGGATCTTAACTACCT
CATAAACAAGGTGCATCAGCTTGGATTGTATGTGCTTATGGATGTAGTCC
ACTCTCATGCATCGAGCAAATCTATGGATGGTATTAACAACTTTGATGGC
ACTGACCATCAATACTTTCATGAAGGTGAGCGGGGGCGACATTCTTTGTG
GGCTTCTAGACTTTTCAACTACGGTAACTGGGAAGTGCTCCGTTTCCTCT
TATCCAACCTCAGATGGTACATGGAGGAGTATCACTTTGACGGTTTCCGT
TTTGATGGCATCATATCAATGCTGTACTTGCATTCTGGAATTGGCGTGCA
GTTTACTGGTAACTATAGCAAGTACTTTGGTTTCCAAGTTGATGTTGATG
CATGCGTTTACATGATGCTCGCTAACAAGCTTTTACATGACCTTTACCCT
GATGTGGCACTTACCATCGCAGAAGATGTGAGTGGTATGCCGACACTATG
CGTGCAGGGATTGGATTTGATTATCGCCTTGCCATGGCTATTCCTTACAT
GTGGATAGAGGTCTTGGAAAAAGAAAAGGATGGAAACTGGAAGATGGGCA
ACGTGGTTTTCACTCTTACAAATCGTCGTTGGAACGAGAAGTTCATAGGA
TACTGCGAAAGTCATGATCAGGCACTGGTGGGAGACAAAACCATCGCGTT
CTGGTTGATGGACGCGGCGATGTATACTGACATGAGTTGTAATGGCTATC
CCACACCCGTAATCGAGCGAGGCATCGCTCTTCACAAAATGATTCGATTG
CTCACAATGTGCTTGTCTGGCGAGGGATACCTTACGTTCATGGGAAACGA
ATTTGGGCTCCCAGAATGGATTGATTTTCCGCGTGAAGGAAACGGTAACT
CGTACCAACATGCGCGTCGCCGATGGGATCTTTGCAACAATGAGGCTCTT
CGTTACAGGCACTTATACCAATTTGAGAAAATGATGCATGCTTTGGATAA
TGAACATCCCATCTGTCGATTCCAGGCGCACCAGTACATGGTGCTTCAAC
AAGAAGGCAACAAGCTGATTGCGGTTAAAAAGGGTGATAGGTTGCTGTTC
GTGTTCAACTTTCACCATTCGCAGTCGTACAGTGACTATCGAATTGGAAC
ATACTGGGCGGGTCGATACAAACTTGTTCTTGATTCAGATGGCACGAACA
CTGGTGGACATGGTCGGGTATATTGGGATGTGGTACATACTACTAGTACT
GAGGCCTGGTATAATCGACCATACTTCTTGCAGTTAAACGTCCCAGCGAG
GACATGTCAAGTGTACTATTGCTTCGAAACCTGGGAAGAGGAGAGAGAGA
AAGGGGAGAAGGCCAAACAGACTACCAAAAAGGCAGAGAGTGCGGTTGAT
TGTGCGAAAGAAAAAGCTAGTACGGAAGTTGAGGAGGTTGCAGCGGTCGC
AGTCAAGAATGACGAGACAGTGCGCTTGAACGGCTCACAAAAAGCCCCGG
GGAAGCGACAGGAGAAGGTTGTAGCTGGGAAAGCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000108_pilon:61876..63563-

>Ggra10375.t1 ID=Ggra10375.t1|Name=Ggra10375.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1614bp|location=Sequence derived from alignment at tig00000108_pilon:61876..63563- (Gracilaria gracilis GNS1m male)
ATGGGGTCTAATGATCTCAAGGTTGGCTCATATCGTGAGTTTGCAGATAA
TGTGTTACCACGTATTAAGGAAACGGGTTATACTGCCTTACAGATTATGT
ACATTACGGAACGTGCGTACTATGCTAGCTTTGGCTACCACGTCACCAAT
TTCTTTGCGATTAGTTCCAGATGCGGCCAACCGGAGGATCTTAACTACCT
CATAAACAAGGTGCATCAGCTTGGATTGTATGTGCTTATGGATGTAGTCC
ACTCTCATGCATCGAGCAAATCTATGGATGGTATTAACAACTTTGATGGC
ACTGACCATCAATACTTTCATGAAGGTGAGCGGGGGCGACATTCTTTGTG
GGCTTCTAGACTTTTCAACTACGGTAACTGGGAAGTGCTCCGTTTCCTCT
TATCCAACCTCAGATGGTACATGGAGGAGTATCACTTTGACGGTTTCCGT
TTTGATGGCATCATATCAATGCTGTACTTGCATTCTGGAATTGGCGTGCA
GTTTACTGGTAACTATAGCAAGTACTTTGGTTTCCAAGTTGATGTTGATG
CATGCGTTTACATGATGCTCGCTAACAAGCTTTTACATGACCTTTACCCT
GATGTGGCACTTACCATCGCAGAAGATGTGAGTGAGGTCTTGGAAAAAGA
AAAGGATGGAAACTGGAAGATGGGCAACGTGGTTTTCACTCTTACAAATC
GTCGTTGGAACGAGAAGTTCATAGGATACTGCGAAAGTCATGATCAGGCA
CTGGTGGGAGACAAAACCATCGCGTTCTGGTTGATGGACGCGGCGATGTA
TACTGACATGAGTTGTAATGGCTATCCCACACCCGTAATCGAGCGAGGCA
TCGCTCTTCACAAAATGATTCGATTGCTCACAATGTGCTTGTCTGGCGAG
GGATACCTTACGTTCATGGGAAACGAATTTGGGCTCCCAGAATGGATTGA
TTTTCCGCGTGAAGGAAACGGTAACTCGTACCAACATGCGCGTCGCCGAT
GGGATCTTTGCAACAATGAGGCTCTTCGTTACAGGCACTTATACCAATTT
GAGAAAATGATGCATGCTTTGGATAATGAACATCCCATCTGTCGATTCCA
GGCGCACCAGTACATGGTGCTTCAACAAGAAGGCAACAAGCTGATTGCGG
TTAAAAAGGGTGATAGGTTGCTGTTCGTGTTCAACTTTCACCATTCGCAG
TCGTACAGTGACTATCGAATTGGAACATACTGGGCGGGTCGATACAAACT
TGTTCTTGATTCAGATGGCACGAACACTGGTGGACATGGTCGGGTATATT
GGGATGTGGTACATACTACTAGTACTGAGGCCTGGTATAATCGACCATAC
TTCTTGCAGTTAAACGTCCCAGCGAGGACATGTCAAGTGTACTATTGCTT
CGAAACCTGGGAAGAGGAGAGAGAGAAAGGGGAGAAGGCCAAACAGACTA
CCAAAAAGGCAGAGAGTGCGGTTGATTGTGCGAAAGAAAAAGCTAGTACG
GAAGTTGAGGAGGTTGCAGCGGTCGCAGTCAAGAATGACGAGACAGTGCG
CTTGAACGGCTCACAAAAAGCCCCGGGGAAGCGACAGGAGAAGGTTGTAG
CTGGGAAAGCGTAG
back to top