Ggra10320.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10320.t1
Unique NameGgra10320.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:901486..902295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10320Ggra10320Gracilaria gracilis GNS1m malegenetig00000016_pilon 901486..902295 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10320.t1.start1Ggra10320.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 901486..901488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10320.t1.CDS1Ggra10320.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 901486..902295 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10320.t1.exon1Ggra10320.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 901486..902295 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10320.t1.stop1Ggra10320.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 902293..902295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10320.t1Ggra10320.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 901486..902295 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10320.t1 ID=Ggra10320.t1|Name=Ggra10320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=270bp
MKSLLLLSVLSLAVLVSAQITRPVPVTLPFGVGELPLSLSPRTEARIADA
KARIESIRTPLTARPKGAKSLALAFGEVAAGGCDPNVCFALDGSISIDKD
SFQLQKDFVKLVAGVISLDEQSKFAALQYGLRTSIISDLTVDANDFLLKV
DSAVQIGARRTFVARGIFGCLLQLLNTPWEANHIVLLGDGEDSDVSRFTD
FGSAAIARQFLRNPNNQISAVAVGFSDTSGLENIVGSADRVFTVGQWSEV
VDVTADLVVDVCGVDALEF*
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spliced messenger RNA

>Ggra10320.t1 ID=Ggra10320.t1|Name=Ggra10320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000016_pilon:901486..902295+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAGCTTACTTCTCCTCTCCGTGCTATCGCTGGCCGTTTTGGTGAG
TGCTCAAATTACCCGACCCGTTCCCGTCACTCTTCCTTTCGGAGTTGGAG
AACTCCCACTTTCCCTTTCACCTCGCACTGAAGCCCGAATTGCCGATGCA
AAAGCGCGTATTGAATCAATTCGTACGCCTTTAACCGCTCGACCAAAGGG
AGCCAAGTCATTGGCATTGGCCTTTGGCGAGGTGGCAGCAGGGGGATGCG
ATCCCAACGTTTGCTTCGCACTGGACGGAAGTATTTCCATTGACAAAGAC
AGTTTCCAACTTCAGAAGGATTTCGTCAAGTTGGTCGCAGGGGTTATATC
TCTCGACGAGCAATCAAAGTTTGCTGCCTTGCAGTATGGCCTAAGAACTT
CGATTATCAGCGATTTGACAGTCGACGCCAACGACTTCCTGCTCAAGGTT
GACTCTGCTGTTCAGATTGGTGCCAGAAGAACGTTTGTGGCTCGGGGAAT
CTTTGGCTGTCTTCTGCAGCTGCTCAACACCCCATGGGAAGCCAACCATA
TTGTGTTGCTTGGTGATGGAGAGGATAGCGATGTCTCTCGCTTCACTGAC
TTCGGAAGCGCAGCCATTGCTCGACAGTTCCTTCGCAACCCGAACAACCA
GATTTCGGCAGTTGCAGTTGGGTTCAGTGACACGTCCGGTTTGGAGAATA
TTGTGGGCAGCGCAGATCGTGTGTTCACTGTGGGACAATGGTCCGAGGTA
GTGGACGTAACAGCCGACCTAGTGGTGGACGTTTGTGGAGTTGATGCGCT
TGAGTTCTAA
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protein sequence of Ggra10320.t1

>Ggra10320.t1 ID=Ggra10320.t1|Name=Ggra10320.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MKSLLLLSVLSLAVLVSAQITRPVPVTLPFGVGELPLSLSPRTEARIADA
KARIESIRTPLTARPKGAKSLALAFGEVAAGGCDPNVCFALDGSISIDKD
SFQLQKDFVKLVAGVISLDEQSKFAALQYGLRTSIISDLTVDANDFLLKV
DSAVQIGARRTFVARGIFGCLLQLLNTPWEANHIVLLGDGEDSDVSRFTD
FGSAAIARQFLRNPNNQISAVAVGFSDTSGLENIVGSADRVFTVGQWSEV
VDVTADLVVDVCGVDALEF*
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mRNA from alignment at tig00000016_pilon:901486..902295+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10320.t1 ID=Ggra10320.t1|Name=Ggra10320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000016_pilon:901486..902295+ (Gracilaria gracilis GNS1m male)
ATGAAAAGCTTACTTCTCCTCTCCGTGCTATCGCTGGCCGTTTTGGTGAG
TGCTCAAATTACCCGACCCGTTCCCGTCACTCTTCCTTTCGGAGTTGGAG
AACTCCCACTTTCCCTTTCACCTCGCACTGAAGCCCGAATTGCCGATGCA
AAAGCGCGTATTGAATCAATTCGTACGCCTTTAACCGCTCGACCAAAGGG
AGCCAAGTCATTGGCATTGGCCTTTGGCGAGGTGGCAGCAGGGGGATGCG
ATCCCAACGTTTGCTTCGCACTGGACGGAAGTATTTCCATTGACAAAGAC
AGTTTCCAACTTCAGAAGGATTTCGTCAAGTTGGTCGCAGGGGTTATATC
TCTCGACGAGCAATCAAAGTTTGCTGCCTTGCAGTATGGCCTAAGAACTT
CGATTATCAGCGATTTGACAGTCGACGCCAACGACTTCCTGCTCAAGGTT
GACTCTGCTGTTCAGATTGGTGCCAGAAGAACGTTTGTGGCTCGGGGAAT
CTTTGGCTGTCTTCTGCAGCTGCTCAACACCCCATGGGAAGCCAACCATA
TTGTGTTGCTTGGTGATGGAGAGGATAGCGATGTCTCTCGCTTCACTGAC
TTCGGAAGCGCAGCCATTGCTCGACAGTTCCTTCGCAACCCGAACAACCA
GATTTCGGCAGTTGCAGTTGGGTTCAGTGACACGTCCGGTTTGGAGAATA
TTGTGGGCAGCGCAGATCGTGTGTTCACTGTGGGACAATGGTCCGAGGTA
GTGGACGTAACAGCCGACCTAGTGGTGGACGTTTGTGGAGTTGATGCGCT
TGAGTTCTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:901486..902295+

>Ggra10320.t1 ID=Ggra10320.t1|Name=Ggra10320.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00000016_pilon:901486..902295+ (Gracilaria gracilis GNS1m male)
ATGAAAAGCTTACTTCTCCTCTCCGTGCTATCGCTGGCCGTTTTGGTGAG
TGCTCAAATTACCCGACCCGTTCCCGTCACTCTTCCTTTCGGAGTTGGAG
AACTCCCACTTTCCCTTTCACCTCGCACTGAAGCCCGAATTGCCGATGCA
AAAGCGCGTATTGAATCAATTCGTACGCCTTTAACCGCTCGACCAAAGGG
AGCCAAGTCATTGGCATTGGCCTTTGGCGAGGTGGCAGCAGGGGGATGCG
ATCCCAACGTTTGCTTCGCACTGGACGGAAGTATTTCCATTGACAAAGAC
AGTTTCCAACTTCAGAAGGATTTCGTCAAGTTGGTCGCAGGGGTTATATC
TCTCGACGAGCAATCAAAGTTTGCTGCCTTGCAGTATGGCCTAAGAACTT
CGATTATCAGCGATTTGACAGTCGACGCCAACGACTTCCTGCTCAAGGTT
GACTCTGCTGTTCAGATTGGTGCCAGAAGAACGTTTGTGGCTCGGGGAAT
CTTTGGCTGTCTTCTGCAGCTGCTCAACACCCCATGGGAAGCCAACCATA
TTGTGTTGCTTGGTGATGGAGAGGATAGCGATGTCTCTCGCTTCACTGAC
TTCGGAAGCGCAGCCATTGCTCGACAGTTCCTTCGCAACCCGAACAACCA
GATTTCGGCAGTTGCAGTTGGGTTCAGTGACACGTCCGGTTTGGAGAATA
TTGTGGGCAGCGCAGATCGTGTGTTCACTGTGGGACAATGGTCCGAGGTA
GTGGACGTAACAGCCGACCTAGTGGTGGACGTTTGTGGAGTTGATGCGCT
TGAGTTCTAA
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