Ggra10297.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10297.t1
Unique NameGgra10297.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:535792..536775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10297Ggra10297Gracilaria gracilis GNS1m malegenetig00000016_pilon 535792..536775 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10297.t1.start1Ggra10297.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 535792..535794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10297.t1.CDS1Ggra10297.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 535792..536775 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10297.t1.exon1Ggra10297.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 535792..536775 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10297.t1.stop1Ggra10297.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 536773..536775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10297.t1Ggra10297.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 535792..536775 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10297.t1 ID=Ggra10297.t1|Name=Ggra10297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=328bp
MKATCVYVMGYQNREGIGQTMLRNQFAVFVAQLLSSKLAFPEHESEHGYN
YADVFDRCEPPAESVSPKTNASKTVAKQGCYLRQEDLFFERCERGNCGCL
KREVMKYVLPLARKCTTIGVEHNRFKTQEYSGCIKGVLRRYLGGPNRWPT
AYNAVHYRQGDLAKKRNEGDFWLLKLNSMIDFMCKYSKLDIIVVTQGEPE
IPKCEQRVVLASNTSEKEAFSVIQNAHWIGLEISGFALAMAQIASPERVL
MPDYAMPYYDWLRTPKWTVFTKSGATFSFGNGDRALRAIYHPKALDVRTH
RLGYSRKYVRFETEVPARRWQQEALPL*
back to top

spliced messenger RNA

>Ggra10297.t1 ID=Ggra10297.t1|Name=Ggra10297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00000016_pilon:535792..536775+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCTACTTGCGTGTATGTGATGGGTTATCAGAACAGGGAAGGTAT
CGGTCAGACAATGCTGCGAAATCAATTCGCAGTGTTCGTGGCTCAACTTC
TTTCTTCAAAACTGGCTTTTCCGGAGCATGAGAGCGAGCATGGGTACAAC
TACGCTGACGTTTTCGATCGATGTGAGCCGCCAGCAGAATCTGTTTCCCC
CAAGACAAACGCCTCCAAAACAGTAGCGAAGCAGGGTTGCTATCTACGTC
AAGAAGACCTATTCTTCGAACGTTGCGAACGTGGGAACTGTGGGTGTTTG
AAGAGAGAAGTGATGAAGTACGTTCTTCCACTTGCGAGGAAGTGCACAAC
GATAGGGGTCGAACACAACCGATTCAAAACGCAGGAGTACTCTGGGTGCA
TCAAAGGCGTTCTGAGGCGATATCTGGGCGGTCCCAATCGGTGGCCAACA
GCATACAACGCCGTCCACTACCGTCAAGGCGATCTAGCAAAGAAGCGAAA
TGAGGGCGATTTCTGGCTGCTGAAACTGAACAGCATGATAGACTTTATGT
GCAAATACTCCAAGCTCGACATAATCGTGGTCACGCAGGGCGAGCCAGAG
ATCCCAAAGTGTGAACAACGCGTGGTACTCGCTAGCAATACGAGTGAGAA
GGAAGCGTTCTCCGTGATACAGAACGCACATTGGATCGGACTTGAAATCA
GCGGCTTCGCGCTTGCCATGGCACAGATCGCTAGTCCTGAACGCGTGCTG
ATGCCGGACTACGCCATGCCGTACTACGACTGGCTGCGAACTCCCAAGTG
GACTGTGTTCACTAAGTCAGGCGCCACGTTTAGTTTTGGCAATGGAGACA
GAGCGCTGCGCGCCATTTACCATCCGAAGGCGCTCGACGTGCGCACGCAT
AGGCTGGGTTACTCGCGGAAGTACGTGCGCTTCGAGACCGAAGTTCCAGC
TCGACGATGGCAGCAGGAGGCCCTTCCGCTTTGA
back to top

protein sequence of Ggra10297.t1

>Ggra10297.t1 ID=Ggra10297.t1|Name=Ggra10297.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=328bp
MKATCVYVMGYQNREGIGQTMLRNQFAVFVAQLLSSKLAFPEHESEHGYN
YADVFDRCEPPAESVSPKTNASKTVAKQGCYLRQEDLFFERCERGNCGCL
KREVMKYVLPLARKCTTIGVEHNRFKTQEYSGCIKGVLRRYLGGPNRWPT
AYNAVHYRQGDLAKKRNEGDFWLLKLNSMIDFMCKYSKLDIIVVTQGEPE
IPKCEQRVVLASNTSEKEAFSVIQNAHWIGLEISGFALAMAQIASPERVL
MPDYAMPYYDWLRTPKWTVFTKSGATFSFGNGDRALRAIYHPKALDVRTH
RLGYSRKYVRFETEVPARRWQQEALPL*
back to top

mRNA from alignment at tig00000016_pilon:535792..536775+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10297.t1 ID=Ggra10297.t1|Name=Ggra10297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00000016_pilon:535792..536775+ (Gracilaria gracilis GNS1m male)
ATGAAGGCTACTTGCGTGTATGTGATGGGTTATCAGAACAGGGAAGGTAT
CGGTCAGACAATGCTGCGAAATCAATTCGCAGTGTTCGTGGCTCAACTTC
TTTCTTCAAAACTGGCTTTTCCGGAGCATGAGAGCGAGCATGGGTACAAC
TACGCTGACGTTTTCGATCGATGTGAGCCGCCAGCAGAATCTGTTTCCCC
CAAGACAAACGCCTCCAAAACAGTAGCGAAGCAGGGTTGCTATCTACGTC
AAGAAGACCTATTCTTCGAACGTTGCGAACGTGGGAACTGTGGGTGTTTG
AAGAGAGAAGTGATGAAGTACGTTCTTCCACTTGCGAGGAAGTGCACAAC
GATAGGGGTCGAACACAACCGATTCAAAACGCAGGAGTACTCTGGGTGCA
TCAAAGGCGTTCTGAGGCGATATCTGGGCGGTCCCAATCGGTGGCCAACA
GCATACAACGCCGTCCACTACCGTCAAGGCGATCTAGCAAAGAAGCGAAA
TGAGGGCGATTTCTGGCTGCTGAAACTGAACAGCATGATAGACTTTATGT
GCAAATACTCCAAGCTCGACATAATCGTGGTCACGCAGGGCGAGCCAGAG
ATCCCAAAGTGTGAACAACGCGTGGTACTCGCTAGCAATACGAGTGAGAA
GGAAGCGTTCTCCGTGATACAGAACGCACATTGGATCGGACTTGAAATCA
GCGGCTTCGCGCTTGCCATGGCACAGATCGCTAGTCCTGAACGCGTGCTG
ATGCCGGACTACGCCATGCCGTACTACGACTGGCTGCGAACTCCCAAGTG
GACTGTGTTCACTAAGTCAGGCGCCACGTTTAGTTTTGGCAATGGAGACA
GAGCGCTGCGCGCCATTTACCATCCGAAGGCGCTCGACGTGCGCACGCAT
AGGCTGGGTTACTCGCGGAAGTACGTGCGCTTCGAGACCGAAGTTCCAGC
TCGACGATGGCAGCAGGAGGCCCTTCCGCTTTGA
back to top

Coding sequence (CDS) from alignment at tig00000016_pilon:535792..536775+

>Ggra10297.t1 ID=Ggra10297.t1|Name=Ggra10297.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00000016_pilon:535792..536775+ (Gracilaria gracilis GNS1m male)
ATGAAGGCTACTTGCGTGTATGTGATGGGTTATCAGAACAGGGAAGGTAT
CGGTCAGACAATGCTGCGAAATCAATTCGCAGTGTTCGTGGCTCAACTTC
TTTCTTCAAAACTGGCTTTTCCGGAGCATGAGAGCGAGCATGGGTACAAC
TACGCTGACGTTTTCGATCGATGTGAGCCGCCAGCAGAATCTGTTTCCCC
CAAGACAAACGCCTCCAAAACAGTAGCGAAGCAGGGTTGCTATCTACGTC
AAGAAGACCTATTCTTCGAACGTTGCGAACGTGGGAACTGTGGGTGTTTG
AAGAGAGAAGTGATGAAGTACGTTCTTCCACTTGCGAGGAAGTGCACAAC
GATAGGGGTCGAACACAACCGATTCAAAACGCAGGAGTACTCTGGGTGCA
TCAAAGGCGTTCTGAGGCGATATCTGGGCGGTCCCAATCGGTGGCCAACA
GCATACAACGCCGTCCACTACCGTCAAGGCGATCTAGCAAAGAAGCGAAA
TGAGGGCGATTTCTGGCTGCTGAAACTGAACAGCATGATAGACTTTATGT
GCAAATACTCCAAGCTCGACATAATCGTGGTCACGCAGGGCGAGCCAGAG
ATCCCAAAGTGTGAACAACGCGTGGTACTCGCTAGCAATACGAGTGAGAA
GGAAGCGTTCTCCGTGATACAGAACGCACATTGGATCGGACTTGAAATCA
GCGGCTTCGCGCTTGCCATGGCACAGATCGCTAGTCCTGAACGCGTGCTG
ATGCCGGACTACGCCATGCCGTACTACGACTGGCTGCGAACTCCCAAGTG
GACTGTGTTCACTAAGTCAGGCGCCACGTTTAGTTTTGGCAATGGAGACA
GAGCGCTGCGCGCCATTTACCATCCGAAGGCGCTCGACGTGCGCACGCAT
AGGCTGGGTTACTCGCGGAAGTACGTGCGCTTCGAGACCGAAGTTCCAGC
TCGACGATGGCAGCAGGAGGCCCTTCCGCTTTGA
back to top