Ggra10286.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10286.t1
Unique NameGgra10286.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:377256..378395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706294.1
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG koko:K15281
KEGG TC2.A.7.15
GOsGO:0003674,GO:0005215,GO:0005338,GO:0006810,GO:0008150,GO:0015165,GO:0015780,GO:0015931,GO:0015932,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0090481,GO:1901264,GO:1901505
Evalue8.75e-66
EggNOG OGsCOG5070@1|root,KOG1444@2759|Eukaryota
Descriptionnucleotide-sugar transmembrane transporter activity
COG categoryGOU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10286Ggra10286Gracilaria gracilis GNS1m malegenetig00000016_pilon 377256..378395 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10286.t1.stop1Ggra10286.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 377256..377258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10286.t1.CDS1Ggra10286.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 377256..378395 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10286.t1.exon1Ggra10286.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 377256..378395 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10286.t1.start1Ggra10286.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 378393..378395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10286.t1Ggra10286.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 377256..378395 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10286.t1 ID=Ggra10286.t1|Name=Ggra10286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MALSHPDASDASLRRVVAALLFFCGSSLGAIFVNKACLTLFNFNYPSSLM
ALQAALTVILLSVLSALAPSLVSITTLKSSDYYRLLPSTLFFVANVTIGL
SALSRVNIPMFSAFRRLTVLFVMAAEYLMLRTTQPRSVVLAVFILTFGAF
VSALGDVTFTFVGYALVFLNNALTAAYLASIKRVMRDLQLDPTSLLYYTS
VIALPIILCIAVLTGDLQSAVYRYHTDPNLRDSPSFLLALSFVAVSAFCV
NLSTSMCTYITSPLTTSVAGQVKNVLQSLLGFFSWGYVPTPLNVIGLLIA
LGGQISFAVFKHAHTNALKACASAQAAADERSGDDGDEQHQHQLHLHQHC
EQRGQMDAVLVSSPRHVSSRAGAQNDCKR*
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spliced messenger RNA

>Ggra10286.t1 ID=Ggra10286.t1|Name=Ggra10286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000016_pilon:377256..378395- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGTCGCACCCCGATGCGTCCGACGCCTCGCTGCGCCGCGTGGT
CGCCGCGCTGCTGTTCTTCTGCGGCTCCTCGCTGGGCGCCATCTTCGTTA
ACAAGGCTTGTTTAACGCTGTTCAACTTCAACTACCCCTCCTCGCTCATG
GCGTTGCAGGCCGCCTTGACAGTCATTCTGCTCTCCGTGCTGTCCGCGCT
CGCGCCGTCGCTCGTGTCCATCACCACCCTCAAGAGCTCCGACTACTACC
GCCTGCTGCCGTCCACGCTGTTCTTCGTGGCCAATGTGACCATCGGCTTG
TCCGCGCTGTCGCGCGTCAACATCCCCATGTTCTCCGCCTTTCGCAGGCT
CACCGTGCTCTTCGTCATGGCCGCCGAGTACCTGATGCTGCGCACCACGC
AGCCGCGCTCCGTCGTGCTCGCCGTGTTCATTCTCACCTTTGGCGCCTTT
GTGTCCGCGCTGGGCGACGTCACCTTCACCTTTGTGGGCTATGCGCTCGT
GTTCCTCAACAATGCGCTCACCGCCGCGTACCTGGCCTCCATCAAGCGCG
TCATGCGCGACCTGCAGCTGGATCCCACCTCGCTGCTGTACTACACCAGC
GTCATAGCGCTTCCCATCATCCTGTGCATTGCCGTGCTCACCGGCGATTT
GCAAAGCGCCGTGTACCGCTACCACACCGACCCCAACCTGCGCGACTCGC
CGTCCTTTTTGCTGGCGCTGTCGTTTGTGGCCGTGTCGGCGTTTTGCGTC
AACCTGTCCACCTCCATGTGCACGTACATCACGTCGCCGCTCACCACCTC
CGTGGCCGGGCAGGTGAAGAACGTGCTGCAGTCGTTGTTGGGCTTCTTCT
CGTGGGGCTACGTGCCCACGCCGCTCAACGTGATCGGACTGCTCATCGCG
CTGGGCGGACAAATCAGTTTTGCGGTGTTCAAACATGCGCATACCAACGC
GTTGAAGGCCTGTGCGTCTGCGCAAGCGGCTGCTGACGAGCGCAGCGGCG
ACGACGGTGATGAGCAGCACCAGCACCAGCTGCACCTCCACCAGCACTGT
GAGCAGCGCGGTCAAATGGACGCTGTGCTGGTTTCTTCACCGAGACATGT
CAGTTCGAGAGCTGGCGCACAAAACGACTGCAAGCGCTAG
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protein sequence of Ggra10286.t1

>Ggra10286.t1 ID=Ggra10286.t1|Name=Ggra10286.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MALSHPDASDASLRRVVAALLFFCGSSLGAIFVNKACLTLFNFNYPSSLM
ALQAALTVILLSVLSALAPSLVSITTLKSSDYYRLLPSTLFFVANVTIGL
SALSRVNIPMFSAFRRLTVLFVMAAEYLMLRTTQPRSVVLAVFILTFGAF
VSALGDVTFTFVGYALVFLNNALTAAYLASIKRVMRDLQLDPTSLLYYTS
VIALPIILCIAVLTGDLQSAVYRYHTDPNLRDSPSFLLALSFVAVSAFCV
NLSTSMCTYITSPLTTSVAGQVKNVLQSLLGFFSWGYVPTPLNVIGLLIA
LGGQISFAVFKHAHTNALKACASAQAAADERSGDDGDEQHQHQLHLHQHC
EQRGQMDAVLVSSPRHVSSRAGAQNDCKR*
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mRNA from alignment at tig00000016_pilon:377256..378395-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10286.t1 ID=Ggra10286.t1|Name=Ggra10286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000016_pilon:377256..378395- (Gracilaria gracilis GNS1m male)
ATGGCGCTGTCGCACCCCGATGCGTCCGACGCCTCGCTGCGCCGCGTGGT
CGCCGCGCTGCTGTTCTTCTGCGGCTCCTCGCTGGGCGCCATCTTCGTTA
ACAAGGCTTGTTTAACGCTGTTCAACTTCAACTACCCCTCCTCGCTCATG
GCGTTGCAGGCCGCCTTGACAGTCATTCTGCTCTCCGTGCTGTCCGCGCT
CGCGCCGTCGCTCGTGTCCATCACCACCCTCAAGAGCTCCGACTACTACC
GCCTGCTGCCGTCCACGCTGTTCTTCGTGGCCAATGTGACCATCGGCTTG
TCCGCGCTGTCGCGCGTCAACATCCCCATGTTCTCCGCCTTTCGCAGGCT
CACCGTGCTCTTCGTCATGGCCGCCGAGTACCTGATGCTGCGCACCACGC
AGCCGCGCTCCGTCGTGCTCGCCGTGTTCATTCTCACCTTTGGCGCCTTT
GTGTCCGCGCTGGGCGACGTCACCTTCACCTTTGTGGGCTATGCGCTCGT
GTTCCTCAACAATGCGCTCACCGCCGCGTACCTGGCCTCCATCAAGCGCG
TCATGCGCGACCTGCAGCTGGATCCCACCTCGCTGCTGTACTACACCAGC
GTCATAGCGCTTCCCATCATCCTGTGCATTGCCGTGCTCACCGGCGATTT
GCAAAGCGCCGTGTACCGCTACCACACCGACCCCAACCTGCGCGACTCGC
CGTCCTTTTTGCTGGCGCTGTCGTTTGTGGCCGTGTCGGCGTTTTGCGTC
AACCTGTCCACCTCCATGTGCACGTACATCACGTCGCCGCTCACCACCTC
CGTGGCCGGGCAGGTGAAGAACGTGCTGCAGTCGTTGTTGGGCTTCTTCT
CGTGGGGCTACGTGCCCACGCCGCTCAACGTGATCGGACTGCTCATCGCG
CTGGGCGGACAAATCAGTTTTGCGGTGTTCAAACATGCGCATACCAACGC
GTTGAAGGCCTGTGCGTCTGCGCAAGCGGCTGCTGACGAGCGCAGCGGCG
ACGACGGTGATGAGCAGCACCAGCACCAGCTGCACCTCCACCAGCACTGT
GAGCAGCGCGGTCAAATGGACGCTGTGCTGGTTTCTTCACCGAGACATGT
CAGTTCGAGAGCTGGCGCACAAAACGACTGCAAGCGCTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:377256..378395-

>Ggra10286.t1 ID=Ggra10286.t1|Name=Ggra10286.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000016_pilon:377256..378395- (Gracilaria gracilis GNS1m male)
ATGGCGCTGTCGCACCCCGATGCGTCCGACGCCTCGCTGCGCCGCGTGGT
CGCCGCGCTGCTGTTCTTCTGCGGCTCCTCGCTGGGCGCCATCTTCGTTA
ACAAGGCTTGTTTAACGCTGTTCAACTTCAACTACCCCTCCTCGCTCATG
GCGTTGCAGGCCGCCTTGACAGTCATTCTGCTCTCCGTGCTGTCCGCGCT
CGCGCCGTCGCTCGTGTCCATCACCACCCTCAAGAGCTCCGACTACTACC
GCCTGCTGCCGTCCACGCTGTTCTTCGTGGCCAATGTGACCATCGGCTTG
TCCGCGCTGTCGCGCGTCAACATCCCCATGTTCTCCGCCTTTCGCAGGCT
CACCGTGCTCTTCGTCATGGCCGCCGAGTACCTGATGCTGCGCACCACGC
AGCCGCGCTCCGTCGTGCTCGCCGTGTTCATTCTCACCTTTGGCGCCTTT
GTGTCCGCGCTGGGCGACGTCACCTTCACCTTTGTGGGCTATGCGCTCGT
GTTCCTCAACAATGCGCTCACCGCCGCGTACCTGGCCTCCATCAAGCGCG
TCATGCGCGACCTGCAGCTGGATCCCACCTCGCTGCTGTACTACACCAGC
GTCATAGCGCTTCCCATCATCCTGTGCATTGCCGTGCTCACCGGCGATTT
GCAAAGCGCCGTGTACCGCTACCACACCGACCCCAACCTGCGCGACTCGC
CGTCCTTTTTGCTGGCGCTGTCGTTTGTGGCCGTGTCGGCGTTTTGCGTC
AACCTGTCCACCTCCATGTGCACGTACATCACGTCGCCGCTCACCACCTC
CGTGGCCGGGCAGGTGAAGAACGTGCTGCAGTCGTTGTTGGGCTTCTTCT
CGTGGGGCTACGTGCCCACGCCGCTCAACGTGATCGGACTGCTCATCGCG
CTGGGCGGACAAATCAGTTTTGCGGTGTTCAAACATGCGCATACCAACGC
GTTGAAGGCCTGTGCGTCTGCGCAAGCGGCTGCTGACGAGCGCAGCGGCG
ACGACGGTGATGAGCAGCACCAGCACCAGCTGCACCTCCACCAGCACTGT
GAGCAGCGCGGTCAAATGGACGCTGTGCTGGTTTCTTCACCGAGACATGT
CAGTTCGAGAGCTGGCGCACAAAACGACTGCAAGCGCTAG
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