Ggra10284.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10284.t1
Unique NameGgra10284.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:370877..375461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706265.1
PFAMsChloroa_b-bind
Max annot lvl2759|Eukaryota
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Evalue5.15e-52
EggNOG OGs2CDPH@1|root,2SPER@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10284Ggra10284Gracilaria gracilis GNS1m malegenetig00000016_pilon 370877..375461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10284.t1Ggra10284.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 370877..375461 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10284.t1.start1Ggra10284.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 370877..370879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10284.t1.CDS1Ggra10284.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 370877..371643 +
Ggra10284.t1.CDS2Ggra10284.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 374614..374867 +
Ggra10284.t1.CDS3Ggra10284.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 374972..375352 +
Ggra10284.t1.CDS4Ggra10284.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000016_pilon 375439..375461 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10284.t1.exon1Ggra10284.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 370877..371643 +
Ggra10284.t1.exon2Ggra10284.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 374614..374867 +
Ggra10284.t1.exon3Ggra10284.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 374972..375352 +
Ggra10284.t1.exon4Ggra10284.t1.exon4Gracilaria gracilis GNS1m maleexontig00000016_pilon 375439..375461 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10284.t1.intron1Ggra10284.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 371644..374613 +
Ggra10284.t1.intron2Ggra10284.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 374868..374971 +
Ggra10284.t1.intron3Ggra10284.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000016_pilon 375353..375438 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10284.t1.stop1Ggra10284.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 375459..375461 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10284.t1 ID=Ggra10284.t1|Name=Ggra10284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=475bp
MLRPLFAPPLRFPAVRSHRPAQLCPNRRGVRQMHRATASQLIQPPPQAVA
TQSGQVRVRQHLNPLARRWSQPVNLPQDWYATAFEDTSLPLVVDVGVAKG
RFLLKMAQNQRRCNFLGIEIREPLVHQANRCAEQLGLRNLFYLAGNANVS
LLDILSACPDGVLQQLLIQFCDPWFKKRHAKRRMVNTALVQDIYHILQKS
RNSTVSSASRVLTEPRVFIQSDVLEVATEMTQRFDQHGRFLRLQNEDDLQ
VDRHGCMFAFVSGFAGVPATRASAFTGASFAARHAPVRTARFSMAASKSV
PFLPQPDKLDGSMPGDVGFDPFGFSDMFDLNFLREAEVKHGRICMLAIVG
WVFPEAVYHLPNEIYSASNPLYAVSKVGWLPIVQILLFIAVCEAATGWKK
VYEDKCEDPGNYGFDPLNLAGTPEKKRRQQTAEIKNGRLAMVAIGGAIHH
CLLTNMGLVEQIQSGKWFGGYYVH*
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spliced messenger RNA

>Ggra10284.t1 ID=Ggra10284.t1|Name=Ggra10284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000016_pilon:370877..375461+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACGTCCGTTATTCGCGCCCCCGCTGCGCTTCCCCGCCGTTCGATC
GCATCGCCCAGCACAGCTTTGCCCCAATCGTCGTGGCGTGCGTCAGATGC
ATCGCGCCACCGCCTCACAGCTCATCCAGCCGCCACCGCAAGCCGTCGCC
ACCCAGTCGGGACAGGTTCGCGTTCGTCAGCATCTCAACCCGCTCGCGCG
TCGATGGAGCCAGCCCGTCAATCTACCACAAGATTGGTACGCCACGGCGT
TTGAGGATACCTCTCTTCCGCTCGTGGTGGACGTGGGGGTGGCGAAGGGG
CGCTTTTTGTTGAAGATGGCACAGAACCAACGGCGGTGTAACTTTCTGGG
TATTGAGATTCGGGAGCCTTTGGTGCATCAGGCGAATCGATGCGCTGAGC
AACTTGGGTTGAGGAATTTGTTTTACCTTGCTGGCAATGCTAACGTTTCC
TTGTTAGACATTTTGAGTGCATGTCCTGACGGTGTGCTTCAACAGCTTCT
CATTCAATTTTGTGACCCATGGTTTAAGAAGCGCCATGCGAAGCGTAGAA
TGGTTAATACTGCGCTTGTGCAAGATATCTATCACATCTTGCAAAAGTCC
AGAAACTCCACTGTGTCCAGTGCATCACGTGTACTCACTGAGCCTCGTGT
GTTTATTCAGAGCGATGTGTTGGAGGTTGCTACCGAGATGACTCAACGTT
TTGATCAACATGGACGGTTTTTGCGTCTTCAGAATGAAGATGACTTGCAG
GTCGATCGTCATGGCTGTATGTTTGCGTTTGTGTCTGGCTTTGCCGGCGT
GCCGGCCACCCGTGCGTCCGCCTTCACCGGCGCTTCTTTCGCTGCGCGTC
ATGCGCCCGTCAGAACTGCCCGCTTCTCTATGGCTGCCAGCAAGTCCGTG
CCCTTCCTTCCGCAGCCAGACAAGCTCGATGGCTCCATGCCCGGAGACGT
TGGCTTCGACCCGTTCGGCTTCTCCGACATGTTCGACCTCAACTTCCTTC
GGGAAGCTGAAGTGAAGCACGGCCGAATTTGCATGCTTGCCATTGTGGGA
TGGGTGTTCCCAGAAGCAGTGTACCATCTTCCCAACGAAATCTACTCCGC
CTCAAATCCACTCTACGCCGTGTCCAAGGTTGGGTGGCTGCCAATCGTTC
AGATCCTTCTCTTCATTGCCGTGTGCGAGGCCGCCACCGGCTGGAAGAAG
GTGTACGAAGACAAGTGTGAGGATCCTGGAAACTACGGCTTTGATCCACT
CAACCTTGCTGGCACGCCCGAGAAGAAGAGGCGCCAGCAAACCGCCGAGA
TTAAGAACGGCCGTCTTGCCATGGTGGCCATTGGCGGTGCCATTCACCAC
TGCCTTCTTACAAACATGGGCTTGGTCGAACAGATTCAGTCCGGAAAGTG
GTTCGGTGGATACTATGTGCATTAA
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protein sequence of Ggra10284.t1

>Ggra10284.t1 ID=Ggra10284.t1|Name=Ggra10284.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=475bp
MLRPLFAPPLRFPAVRSHRPAQLCPNRRGVRQMHRATASQLIQPPPQAVA
TQSGQVRVRQHLNPLARRWSQPVNLPQDWYATAFEDTSLPLVVDVGVAKG
RFLLKMAQNQRRCNFLGIEIREPLVHQANRCAEQLGLRNLFYLAGNANVS
LLDILSACPDGVLQQLLIQFCDPWFKKRHAKRRMVNTALVQDIYHILQKS
RNSTVSSASRVLTEPRVFIQSDVLEVATEMTQRFDQHGRFLRLQNEDDLQ
VDRHGCMFAFVSGFAGVPATRASAFTGASFAARHAPVRTARFSMAASKSV
PFLPQPDKLDGSMPGDVGFDPFGFSDMFDLNFLREAEVKHGRICMLAIVG
WVFPEAVYHLPNEIYSASNPLYAVSKVGWLPIVQILLFIAVCEAATGWKK
VYEDKCEDPGNYGFDPLNLAGTPEKKRRQQTAEIKNGRLAMVAIGGAIHH
CLLTNMGLVEQIQSGKWFGGYYVH*
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mRNA from alignment at tig00000016_pilon:370877..375461+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10284.t1 ID=Ggra10284.t1|Name=Ggra10284.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4585bp|location=Sequence derived from alignment at tig00000016_pilon:370877..375461+ (Gracilaria gracilis GNS1m male)
ATGTTACGTCCGTTATTCGCGCCCCCGCTGCGCTTCCCCGCCGTTCGATC
GCATCGCCCAGCACAGCTTTGCCCCAATCGTCGTGGCGTGCGTCAGATGC
ATCGCGCCACCGCCTCACAGCTCATCCAGCCGCCACCGCAAGCCGTCGCC
ACCCAGTCGGGACAGGTTCGCGTTCGTCAGCATCTCAACCCGCTCGCGCG
TCGATGGAGCCAGCCCGTCAATCTACCACAAGATTGGTACGCCACGGCGT
TTGAGGATACCTCTCTTCCGCTCGTGGTGGACGTGGGGGTGGCGAAGGGG
CGCTTTTTGTTGAAGATGGCACAGAACCAACGGCGGTGTAACTTTCTGGG
TATTGAGATTCGGGAGCCTTTGGTGCATCAGGCGAATCGATGCGCTGAGC
AACTTGGGTTGAGGAATTTGTTTTACCTTGCTGGCAATGCTAACGTTTCC
TTGTTAGACATTTTGAGTGCATGTCCTGACGGTGTGCTTCAACAGCTTCT
CATTCAATTTTGTGACCCATGGTTTAAGAAGCGCCATGCGAAGCGTAGAA
TGGTTAATACTGCGCTTGTGCAAGATATCTATCACATCTTGCAAAAGTCC
AGAAACTCCACTGTGTCCAGTGCATCACGTGTACTCACTGAGCCTCGTGT
GTTTATTCAGAGCGATGTGTTGGAGGTTGCTACCGAGATGACTCAACGTT
TTGATCAACATGGACGGTTTTTGCGTCTTCAGAATGAAGATGACTTGCAG
GTCGATCGTCATGGCTGGTTAATTAGGAATCCTCTTCAAGTCCCCACTGA
ACGAGAGATCGCTGTGGTAAACAAAGGAGGTTCCGTCTATCGCGCTTTAT
ATCAAATTGACGTACATCGTGCAACATGAAGCACAATTTTGTCTCGCTCT
CGCCGTCAATTGAAAAAGCTGAATCCACTCTTGACCTGCGCAAGTTATGC
AATGCTCTTCCAGCTTCTCATTGCCTTGCTGCTCTTCGCTTCGTGACCCA
AAGATGTTCCTTAGGTTGGCAGGGATTCACCCCGCTTCGTGGAACACTTG
TCTGTGATTGAGAACGGGGGACCAGTGCCCGTTTCAGAGTGCACATATCG
TCCTGTCAGACTAGCAAATTTTCTCAGTGTTAGTGAACAGAGCAACATGC
ACCTTGTTGCTTTCACACGAAAAGGATATGGCCTTCCATTGACTTCAAAT
TGAAAAGCATGGTATCCCTACTACCGGATGTGTGCGAAGTGCAGTTCGAC
TGTAATGCTTGTCGCTGTGACAAGATAAACTACGAAGGGGTCTCCAAGTG
ATGAGCGTCGTGGAGTTGGAGTAAAGGCTGCTATGTTCAGGAAGGTTAAA
TTTCAGGCTGTATGCTAGGATAATGGGCACGAGGTTGAGGAAATGTTAGT
TTACAAGGAGTTGGAATGCTTATATTGTTTGCAATCATTGTGAATGTTAG
TGGCGAAAAAGCGGCTGCCGATGGGTAAAGAAACATCATCGTTTTGCTTT
GGCATGTGCTTTTGTGTTTTGGGTTGCGGAGTGATTCCCTTTCAAGCGGG
GTTGTTAACAAACTATACATGCAAGGTAATTTGCTTAGCGGGAACGAAGA
GAGGTAGTGTGCACGCCTGTCCTGCGACGTTTGACAGGGCTGGTTTGTTG
AGGCTCGAACGAAGCTGTGCGCTTACGTGAGGTGTTGACAGCAGCTGCTG
AGCGCATAGGCGTGGTGGGAGCATTTTGACGGCGGCGCTTGTTGTGATTT
GGTGGCATCTCAGGAGCAGCGCGTTTGCCACAGAGCGCGGTTCTGGGAGA
GGTTGTGGTATTGAACGGAAACGGGTTGGCAGCAAAGTGTTCAAACATGT
GGTGCAGAAAGTCGGGGAGTTCGACGTTGAGCTTTTCGTTGGCTAGAAGA
CTGGAAGCCATACGTTCGGAGTGGGAGTTGAACGGGGTGAATGAGAGATC
GGAGATCATTGGTGTAGGGAATGTGGAAGAAGGATGGAAATGGAAAGAGA
AGCGGGAGAATAGTGTTCAAGTGTGATTGTGAACGGGGGTTGGGGGTGAG
CGGGAGAGAGATTGGAAAGGTACGAGAAACGCCGCCTTAAGTAGTGTCTG
TATGCAGGTGAAGATGGTTTGCGGGATAGACGTGCTGATGAATTGCAAAG
GCATAGGGTTGTTGACGGAGGTGCTCTAACAGGATGCATTGGATACGTCG
AATTAATGAGTTGAGTGGGCAGTTGGAATTATAGATATGAGTTTGCATGC
ATATCGGTATGCATCATGCGTTAGTTGATCCCGAAACGGTGGTTGACGTG
ACATGGGGCGTACAGGAACGCCACAGAGCTGTTACTCCGGACAGAATGTC
GGTGTAAACGGCGGTACTAACTAGGCAGTCGGAATTGGGGTGGCGATTGG
GAAGCATTGTACATGAACATGAACATGCTCATGTTGGAATAGACGAACGG
TTTGGGCAGTGATGATGATTGTGGTGAACGGGGACgacgcgggacgtcgt
caaactcgcccttgcgatcggcgcaccgatcgctttcggacttgggatgt
cagaaaactcacataggcgatcggcgcaccgttcgcctctccgcactcgg
gatgtcgctaaactcggccgtgcagtcgaccttgccgccgctggcatgtc
gatcgccattcgaacgttggtgctatgtcgttaaacggaccccggttagc
tgctcgacagcagtaggcacggaatcggccatatgaagacggctccacca
ccgtttccttgacttttccccaccgtaattgaactcttacggagacatga
atacggtcgggggtttttcagggttttctcggaggctacgatggagttga
tggacgctgacccgatttcgagctgattctttggtactcatgtcgccgac
gatatgtgggttggtacaagagaatcttgtcatgatcttctgatgggaca
acgtggtactagcaagagcgccttgtcgtggtgtgcccctctgccgatga
cctacacagagggtgactgaagaggtataatctgggaggaacaagggata
aaaggcgatgatcatcggtagcgaaatgctctaacgcaaccgagaatacc
tttgagatctggcgctttgtttacgcaacaactacgtagctcagtgatcg
tagcacgactgaacatttcaagttagcagctatattagcatacgtagatg
aagtgctgtaggtattggaggttcattatgaacctcacgacgtaacgaga
aatgaacgtacgatgctcataaataagaagaagaaCAAGTGGTGAATGGG
GACGTGTTAACATCATGTTCAAGCTCAGGAAGAAAGTTTCAACATGAATA
ATTAAATAATTAATAACTGTGAGCTGTGCACGTTTTGGAAAAAAAATCCA
AAATACCTGCGCGCGCGCAACAGCTGCCGCATGCCCATTGGCCGCACACG
GCGCACGGGTGTGCGCGAGACGCGCCGAGATGCGAACAAGCAGCGCGCAG
CGCACGCGCGCTGCAGATTTTGGCCGAACCGTCACCTCGTCCGCCTCTCG
CTGTTCACCCAACCCCAACCACCATTCGTTCACCCATCGCCCTCTTCTGT
ACATACCCGTCGTCCGTCGtcccccctcccctcccccccccccccccccc
ccgtccttctcctctctccccagctcccgcacctcctTCACCCAGCCTTC
TTCGTTTTCCTCTCACTTCCTCTTACTTCCTTCGTAGTATGTTTGCGTTT
GTGTCTGGCTTTGCCGGCGTGCCGGCCACCCGTGCGTCCGCCTTCACCGG
CGCTTCTTTCGCTGCGCGTCATGCGCCCGTCAGAACTGCCCGCTTCTCTA
TGGCTGCCAGCAAGTCCGTGCCCTTCCTTCCGCAGCCAGACAAGCTCGAT
GGCTCCATGCCCGGAGACGTTGGCTTCGACCCGTTCGGCTTCTCCGACAT
GTTCGACCTCAACTTCCTTCGGGAAGCTGAAGTGAAGCACGGTACGTTGC
CATTGCCGCACCTGTTGATCGCCGTCCAACACTGCTAACATATCTTGTCG
TCTTTGCTCACGCCtttcttttttttttttcttttttGGAAACAGGCCGA
ATTTGCATGCTTGCCATTGTGGGATGGGTGTTCCCAGAAGCAGTGTACCA
TCTTCCCAACGAAATCTACTCCGCCTCAAATCCACTCTACGCCGTGTCCA
AGGTTGGGTGGCTGCCAATCGTTCAGATCCTTCTCTTCATTGCCGTGTGC
GAGGCCGCCACCGGCTGGAAGAAGGTGTACGAAGACAAGTGTGAGGATCC
TGGAAACTACGGCTTTGATCCACTCAACCTTGCTGGCACGCCCGAGAAGA
AGAGGCGCCAGCAAACCGCCGAGATTAAGAACGGCCGTCTTGCCATGGTG
GCCATTGGCGGTGCCATTCACCACTGCCTTCTTACAAACATGGGCTTGGT
CGAACAGATTCAGTCCGGAAAGTGGTGTAAGTTAGCGCTTGTGTCTCTGC
GTTTCACGTGCTTTTTCATTGCGACGGCGTGCACTAACATGATATCGTTT
TTTGTTGTCTAGTCGGTGGATACTATGTGCATTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:370877..375461+

>Ggra10284.t1 ID=Ggra10284.t1|Name=Ggra10284.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1425bp|location=Sequence derived from alignment at tig00000016_pilon:370877..375461+ (Gracilaria gracilis GNS1m male)
ATGTTACGTCCGTTATTCGCGCCCCCGCTGCGCTTCCCCGCCGTTCGATC
GCATCGCCCAGCACAGCTTTGCCCCAATCGTCGTGGCGTGCGTCAGATGC
ATCGCGCCACCGCCTCACAGCTCATCCAGCCGCCACCGCAAGCCGTCGCC
ACCCAGTCGGGACAGGTTCGCGTTCGTCAGCATCTCAACCCGCTCGCGCG
TCGATGGAGCCAGCCCGTCAATCTACCACAAGATTGGTACGCCACGGCGT
TTGAGGATACCTCTCTTCCGCTCGTGGTGGACGTGGGGGTGGCGAAGGGG
CGCTTTTTGTTGAAGATGGCACAGAACCAACGGCGGTGTAACTTTCTGGG
TATTGAGATTCGGGAGCCTTTGGTGCATCAGGCGAATCGATGCGCTGAGC
AACTTGGGTTGAGGAATTTGTTTTACCTTGCTGGCAATGCTAACGTTTCC
TTGTTAGACATTTTGAGTGCATGTCCTGACGGTGTGCTTCAACAGCTTCT
CATTCAATTTTGTGACCCATGGTTTAAGAAGCGCCATGCGAAGCGTAGAA
TGGTTAATACTGCGCTTGTGCAAGATATCTATCACATCTTGCAAAAGTCC
AGAAACTCCACTGTGTCCAGTGCATCACGTGTACTCACTGAGCCTCGTGT
GTTTATTCAGAGCGATGTGTTGGAGGTTGCTACCGAGATGACTCAACGTT
TTGATCAACATGGACGGTTTTTGCGTCTTCAGAATGAAGATGACTTGCAG
GTCGATCGTCATGGCTGTATGTTTGCGTTTGTGTCTGGCTTTGCCGGCGT
GCCGGCCACCCGTGCGTCCGCCTTCACCGGCGCTTCTTTCGCTGCGCGTC
ATGCGCCCGTCAGAACTGCCCGCTTCTCTATGGCTGCCAGCAAGTCCGTG
CCCTTCCTTCCGCAGCCAGACAAGCTCGATGGCTCCATGCCCGGAGACGT
TGGCTTCGACCCGTTCGGCTTCTCCGACATGTTCGACCTCAACTTCCTTC
GGGAAGCTGAAGTGAAGCACGGCCGAATTTGCATGCTTGCCATTGTGGGA
TGGGTGTTCCCAGAAGCAGTGTACCATCTTCCCAACGAAATCTACTCCGC
CTCAAATCCACTCTACGCCGTGTCCAAGGTTGGGTGGCTGCCAATCGTTC
AGATCCTTCTCTTCATTGCCGTGTGCGAGGCCGCCACCGGCTGGAAGAAG
GTGTACGAAGACAAGTGTGAGGATCCTGGAAACTACGGCTTTGATCCACT
CAACCTTGCTGGCACGCCCGAGAAGAAGAGGCGCCAGCAAACCGCCGAGA
TTAAGAACGGCCGTCTTGCCATGGTGGCCATTGGCGGTGCCATTCACCAC
TGCCTTCTTACAAACATGGGCTTGGTCGAACAGATTCAGTCCGGAAAGTG
GTTCGGTGGATACTATGTGCATTAA
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