Ggra10283.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10283.t1
Unique NameGgra10283.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length88
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:370244..370613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3694.POPTR_0018s12030.1
PFAMsRibosomal_L39
Max annot lvl35493|Streptophyta
KEGG koko:K02924
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Evalue5.6e-15
EggNOG OGsCOG0008@1|root,KOG0002@2759|Eukaryota,37WNV@33090|Viridiplantae,3GKUU@35493|Streptophyta,4JQVN@91835|fabids
Description60S ribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10283Ggra10283Gracilaria gracilis GNS1m malegenetig00000016_pilon 370244..370613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10283.t1Ggra10283.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 370244..370613 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10283.t1.stop1Ggra10283.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 370244..370246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10283.t1.CDS1Ggra10283.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 370244..370396 -
Ggra10283.t1.CDS2Ggra10283.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 370503..370613 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10283.t1.exon1Ggra10283.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 370244..370396 -
Ggra10283.t1.exon2Ggra10283.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 370503..370613 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10283.t1.intron1Ggra10283.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 370397..370502 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10283.t1.start1Ggra10283.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 370611..370613 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10283.t1 ID=Ggra10283.t1|Name=Ggra10283.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=88bp
MIATDSSGHNVYRHSSSSPPQKNLPPKVLVRNRPSTMPAHKTFLIKKKLA
KKARQNQQAPHWFRMKTDNKIRYNNKRRHWRRTKLGF*
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spliced messenger RNA

>Ggra10283.t1 ID=Ggra10283.t1|Name=Ggra10283.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp|location=Sequence derived from alignment at tig00000016_pilon:370244..370613- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCCACCGACTCCTCTGGACACAATGTCTATCGTCACAGTTCGTC
TTCCCCTCCGCAGAAAAATCTTCCTCCCAAAGTCCTAGTCCGAAATCGCC
CGTCAACAATGCCGGCTCACAAGACGTTTCTCATCAAGAAGAAGCTCGCC
AAGAAGGCGCGACAAAACCAACAGGCGCCGCATTGGTTCCGAATGAAGAC
GGATAATAAGATTCGATACAACAACAAGCGTCGTCACTGGCGTCGCACAA
AGCTTGGTTTCTAA
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protein sequence of Ggra10283.t1

>Ggra10283.t1 ID=Ggra10283.t1|Name=Ggra10283.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=88bp
MIATDSSGHNVYRHSSSSPPQKNLPPKVLVRNRPSTMPAHKTFLIKKKLA
KKARQNQQAPHWFRMKTDNKIRYNNKRRHWRRTKLGF*
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mRNA from alignment at tig00000016_pilon:370244..370613-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10283.t1 ID=Ggra10283.t1|Name=Ggra10283.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=370bp|location=Sequence derived from alignment at tig00000016_pilon:370244..370613- (Gracilaria gracilis GNS1m male)
ATGATCGCCACCGACTCCTCTGGACACAATGTCTATCGTCACAGTTCGTC
TTCCCCTCCGCAGAAAAATCTTCCTCCCAAAGTCCTAGTCCGAAATCGCC
CGTCAACAATGGTAAGTTACGCTTCGCACCCAGATCGGAACGAACAGAGC
CTTCACTCGAGGTATACGATTTGATTGACTAATGAACTTGGTTTCTTTGC
GTGTGTAATGTGTGTAGCCGGCTCACAAGACGTTTCTCATCAAGAAGAAG
CTCGCCAAGAAGGCGCGACAAAACCAACAGGCGCCGCATTGGTTCCGAAT
GAAGACGGATAATAAGATTCGATACAACAACAAGCGTCGTCACTGGCGTC
GCACAAAGCTTGGTTTCTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:370244..370613-

>Ggra10283.t1 ID=Ggra10283.t1|Name=Ggra10283.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=264bp|location=Sequence derived from alignment at tig00000016_pilon:370244..370613- (Gracilaria gracilis GNS1m male)
ATGATCGCCACCGACTCCTCTGGACACAATGTCTATCGTCACAGTTCGTC
TTCCCCTCCGCAGAAAAATCTTCCTCCCAAAGTCCTAGTCCGAAATCGCC
CGTCAACAATGCCGGCTCACAAGACGTTTCTCATCAAGAAGAAGCTCGCC
AAGAAGGCGCGACAAAACCAACAGGCGCCGCATTGGTTCCGAATGAAGAC
GGATAATAAGATTCGATACAACAACAAGCGTCGTCACTGGCGTCGCACAA
AGCTTGGTTTCTAA
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