Ggra10280.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10280.t1
Unique NameGgra10280.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length405
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:362122..363336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10280Ggra10280Gracilaria gracilis GNS1m malegenetig00000016_pilon 362122..363336 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10280.t1.start1Ggra10280.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 362122..362124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10280.t1.CDS1Ggra10280.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 362122..363336 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10280.t1.exon1Ggra10280.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 362122..363336 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10280.t1.stop1Ggra10280.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 363334..363336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10280.t1Ggra10280.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 362122..363336 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10280.t1 ID=Ggra10280.t1|Name=Ggra10280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp
MANVLRKVFSEEVERKKQSIRLRKVVSEGASNPGNHEGANMIEAVTQSSD
QDVGQAKVIRHAKRPIELLPRFPTLTWTHSSSSMEEMASSVGLTADNARL
VREILKGLNQRLAERCDVVLGSREEGTMSDVAQGRKLSTRDEDVRRRHEH
VKGMVECMPALLSSETDDDDSALTDVRNALVGELQDLYSIMWSMECRKYD
VCSDDIHAAFAWLKLFEDATRVYLAMSEACVYSANKLDECDELTGELLLA
RRHALKRHVVQKLDALQPLKRMLLALDRKAGSQLRALRAGVDAVSTAILR
LLQAESRQLPALLAARDDALWARRRLLAAVRAAKHGRELLVLLSRGARSQ
RARAVWNAELRGAEPAAARVLRCHAQYVAAFQRARREYCAAYERLVALLD
ARLR*
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spliced messenger RNA

>Ggra10280.t1 ID=Ggra10280.t1|Name=Ggra10280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00000016_pilon:362122..363336+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAACGTGCTACGCAAAGTGTTTAGCGAGGAAGTTGAGCGGAAGAA
GCAAAGCATAAGGTTGCGCAAAGTGGTGAGCGAAGGCGCCAGCAATCCGG
GCAACCATGAGGGTGCGAACATGATAGAAGCAGTGACGCAGAGTAGCGAC
CAAGACGTTGGGCAGGCAAAAGTGATTCGACATGCAAAGCGACCGATCGA
ATTGCTTCCGAGATTCCCCACACTGACGTGGACACACTCCAGCTCAAGCA
TGGAGGAAATGGCGAGCAGTGTGGGTTTGACGGCGGATAACGCGAGGCTG
GTGCGAGAGATACTGAAGGGGTTGAATCAAAGATTGGCAGAGCGATGTGA
CGTGGTACTAGGAAGTCGTGAAGAAGGAACGATGAGCGACGTGGCGCAAG
GGCGCAAACTAAGTACACGGGACGAAGACGTACGTCGGCGACACGAACAC
GTGAAAGGCATGGTGGAATGTATGCCTGCTCTACTAAGCAGCGAGACGGA
CGACGATGACTCGGCTCTGACGGACGTGCGCAACGCGCTGGTGGGCGAAC
TACAGGACCTGTACAGCATCATGTGGTCGATGGAGTGTCGCAAGTACGAC
GTGTGCAGCGACGACATACACGCAGCGTTCGCGTGGCTCAAGCTGTTCGA
AGACGCGACGCGCGTGTACCTGGCCATGAGCGAAGCGTGTGTGTACTCGG
CCAACAAGCTGGACGAGTGCGACGAACTGACGGGCGAGCTGTTGCTCGCG
CGGCGCCACGCGCTCAAGCGCCATGTGGTGCAGAAGCTGGACGCGCTGCA
ACCGCTCAAGCGCATGCTGCTAGCGCTGGACCGCAAGGCGGGCTCGCAGC
TGCGCGCGCTGCGCGCCGGCGTGGACGCGGTGTCCACCGCCATTCTGCGG
CTGCTGCAGGCCGAGAGCCGACAGCTGCCGGCGCTGCTGGCGGCGCGCGA
CGACGCGCTGTGGGCGCGGCGCCGGCTGCTGGCGGCCGTGCGCGCCGCCA
AGCACGGGCGCGAGCTGCTGGTGCTGCTGTCGCGCGGCGCGCGTAGTCAA
CGCGCGCGCGCGGTGTGGAACGCCGAGCTGCGCGGCGCGGAGCCGGCCGC
GGCGCGCGTGCTGCGCTGCCACGCGCAGTACGTCGCGGCGTTCCAGCGCG
CGCGGCGCGAGTACTGCGCCGCGTATGAGCGCCTGGTGGCGCTGTTGGAC
GCGCGTCTGCGTTGA
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protein sequence of Ggra10280.t1

>Ggra10280.t1 ID=Ggra10280.t1|Name=Ggra10280.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=405bp
MANVLRKVFSEEVERKKQSIRLRKVVSEGASNPGNHEGANMIEAVTQSSD
QDVGQAKVIRHAKRPIELLPRFPTLTWTHSSSSMEEMASSVGLTADNARL
VREILKGLNQRLAERCDVVLGSREEGTMSDVAQGRKLSTRDEDVRRRHEH
VKGMVECMPALLSSETDDDDSALTDVRNALVGELQDLYSIMWSMECRKYD
VCSDDIHAAFAWLKLFEDATRVYLAMSEACVYSANKLDECDELTGELLLA
RRHALKRHVVQKLDALQPLKRMLLALDRKAGSQLRALRAGVDAVSTAILR
LLQAESRQLPALLAARDDALWARRRLLAAVRAAKHGRELLVLLSRGARSQ
RARAVWNAELRGAEPAAARVLRCHAQYVAAFQRARREYCAAYERLVALLD
ARLR*
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mRNA from alignment at tig00000016_pilon:362122..363336+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10280.t1 ID=Ggra10280.t1|Name=Ggra10280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00000016_pilon:362122..363336+ (Gracilaria gracilis GNS1m male)
ATGGCCAACGTGCTACGCAAAGTGTTTAGCGAGGAAGTTGAGCGGAAGAA
GCAAAGCATAAGGTTGCGCAAAGTGGTGAGCGAAGGCGCCAGCAATCCGG
GCAACCATGAGGGTGCGAACATGATAGAAGCAGTGACGCAGAGTAGCGAC
CAAGACGTTGGGCAGGCAAAAGTGATTCGACATGCAAAGCGACCGATCGA
ATTGCTTCCGAGATTCCCCACACTGACGTGGACACACTCCAGCTCAAGCA
TGGAGGAAATGGCGAGCAGTGTGGGTTTGACGGCGGATAACGCGAGGCTG
GTGCGAGAGATACTGAAGGGGTTGAATCAAAGATTGGCAGAGCGATGTGA
CGTGGTACTAGGAAGTCGTGAAGAAGGAACGATGAGCGACGTGGCGCAAG
GGCGCAAACTAAGTACACGGGACGAAGACGTACGTCGGCGACACGAACAC
GTGAAAGGCATGGTGGAATGTATGCCTGCTCTACTAAGCAGCGAGACGGA
CGACGATGACTCGGCTCTGACGGACGTGCGCAACGCGCTGGTGGGCGAAC
TACAGGACCTGTACAGCATCATGTGGTCGATGGAGTGTCGCAAGTACGAC
GTGTGCAGCGACGACATACACGCAGCGTTCGCGTGGCTCAAGCTGTTCGA
AGACGCGACGCGCGTGTACCTGGCCATGAGCGAAGCGTGTGTGTACTCGG
CCAACAAGCTGGACGAGTGCGACGAACTGACGGGCGAGCTGTTGCTCGCG
CGGCGCCACGCGCTCAAGCGCCATGTGGTGCAGAAGCTGGACGCGCTGCA
ACCGCTCAAGCGCATGCTGCTAGCGCTGGACCGCAAGGCGGGCTCGCAGC
TGCGCGCGCTGCGCGCCGGCGTGGACGCGGTGTCCACCGCCATTCTGCGG
CTGCTGCAGGCCGAGAGCCGACAGCTGCCGGCGCTGCTGGCGGCGCGCGA
CGACGCGCTGTGGGCGCGGCGCCGGCTGCTGGCGGCCGTGCGCGCCGCCA
AGCACGGGCGCGAGCTGCTGGTGCTGCTGTCGCGCGGCGCGCGTAGTCAA
CGCGCGCGCGCGGTGTGGAACGCCGAGCTGCGCGGCGCGGAGCCGGCCGC
GGCGCGCGTGCTGCGCTGCCACGCGCAGTACGTCGCGGCGTTCCAGCGCG
CGCGGCGCGAGTACTGCGCCGCGTATGAGCGCCTGGTGGCGCTGTTGGAC
GCGCGTCTGCGTTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:362122..363336+

>Ggra10280.t1 ID=Ggra10280.t1|Name=Ggra10280.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1215bp|location=Sequence derived from alignment at tig00000016_pilon:362122..363336+ (Gracilaria gracilis GNS1m male)
ATGGCCAACGTGCTACGCAAAGTGTTTAGCGAGGAAGTTGAGCGGAAGAA
GCAAAGCATAAGGTTGCGCAAAGTGGTGAGCGAAGGCGCCAGCAATCCGG
GCAACCATGAGGGTGCGAACATGATAGAAGCAGTGACGCAGAGTAGCGAC
CAAGACGTTGGGCAGGCAAAAGTGATTCGACATGCAAAGCGACCGATCGA
ATTGCTTCCGAGATTCCCCACACTGACGTGGACACACTCCAGCTCAAGCA
TGGAGGAAATGGCGAGCAGTGTGGGTTTGACGGCGGATAACGCGAGGCTG
GTGCGAGAGATACTGAAGGGGTTGAATCAAAGATTGGCAGAGCGATGTGA
CGTGGTACTAGGAAGTCGTGAAGAAGGAACGATGAGCGACGTGGCGCAAG
GGCGCAAACTAAGTACACGGGACGAAGACGTACGTCGGCGACACGAACAC
GTGAAAGGCATGGTGGAATGTATGCCTGCTCTACTAAGCAGCGAGACGGA
CGACGATGACTCGGCTCTGACGGACGTGCGCAACGCGCTGGTGGGCGAAC
TACAGGACCTGTACAGCATCATGTGGTCGATGGAGTGTCGCAAGTACGAC
GTGTGCAGCGACGACATACACGCAGCGTTCGCGTGGCTCAAGCTGTTCGA
AGACGCGACGCGCGTGTACCTGGCCATGAGCGAAGCGTGTGTGTACTCGG
CCAACAAGCTGGACGAGTGCGACGAACTGACGGGCGAGCTGTTGCTCGCG
CGGCGCCACGCGCTCAAGCGCCATGTGGTGCAGAAGCTGGACGCGCTGCA
ACCGCTCAAGCGCATGCTGCTAGCGCTGGACCGCAAGGCGGGCTCGCAGC
TGCGCGCGCTGCGCGCCGGCGTGGACGCGGTGTCCACCGCCATTCTGCGG
CTGCTGCAGGCCGAGAGCCGACAGCTGCCGGCGCTGCTGGCGGCGCGCGA
CGACGCGCTGTGGGCGCGGCGCCGGCTGCTGGCGGCCGTGCGCGCCGCCA
AGCACGGGCGCGAGCTGCTGGTGCTGCTGTCGCGCGGCGCGCGTAGTCAA
CGCGCGCGCGCGGTGTGGAACGCCGAGCTGCGCGGCGCGGAGCCGGCCGC
GGCGCGCGTGCTGCGCTGCCACGCGCAGTACGTCGCGGCGTTCCAGCGCG
CGCGGCGCGAGTACTGCGCCGCGTATGAGCGCCTGGTGGCGCTGTTGGAC
GCGCGTCTGCGTTGA
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