Ggra1028.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1028.t1
Unique NameGgra1028.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length390
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:661292..662461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1028Ggra1028Gracilaria gracilis GNS1m malegenetig00000027_pilon 661292..662461 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1028.t1.start1Ggra1028.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 661292..661294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1028.t1.CDS1Ggra1028.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 661292..662461 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1028.t1.exon1Ggra1028.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 661292..662461 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1028.t1.stop1Ggra1028.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 662459..662461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1028.t1Ggra1028.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 661292..662461 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1028.t1 ID=Ggra1028.t1|Name=Ggra1028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=390bp
MFTVLFGAELSDSLPTQPPTPPPQWSCNINPSADVGPCQTGNVCFAIDQS
DTISTEEYRKENRFVSQFAAMTRKYSASQILSAVAFADDAEVIQSPTDSL
SDFLDAVDSSRRFDGEKSFVAAFNKCHQLLRCARGKKTIVLVSDGQASGM
QKSMLSEYAERLKKSGTLLVTAAIGCDADIELLKDIASIEQFFVDLNEDH
RKVCEQGQRAVELICTGDFASGGTCGGCDCCECTSCGCNNGGGGGDTDCE
KAFDECEFTFEGHDKLATFNATGRADKSFTPLIVSKDKGVEVGVLNMNDV
IPQFIDENGAHEITEFGSQPFTPTNFKPYSVKRTHGSGIGHETYHAEQGQ
LARDKCVRVFFTSMQVWNGDEATNLNDLPKSKCVVFRTM*
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spliced messenger RNA

>Ggra1028.t1 ID=Ggra1028.t1|Name=Ggra1028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00000027_pilon:661292..662461+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCACCGTACTTTTTGGCGCCGAACTCTCAGACTCCTTGCCTACCCA
ACCACCTACCCCTCCTCCCCAATGGTCGTGCAACATTAATCCATCGGCCG
ATGTCGGACCTTGCCAAACGGGCAACGTATGCTTCGCAATCGATCAATCA
GACACGATAAGCACGGAGGAGTATCGCAAAGAAAACAGATTTGTGTCCCA
ATTTGCCGCGATGACCAGAAAATATTCGGCTTCGCAGATCCTCTCCGCAG
TAGCATTCGCAGACGACGCAGAGGTGATTCAAAGCCCCACAGACAGCCTG
TCCGACTTCCTAGACGCCGTCGATAGTTCTCGTCGTTTTGACGGGGAGAA
GTCGTTCGTTGCCGCATTTAACAAGTGCCATCAGCTGCTGCGGTGCGCCC
GGGGAAAGAAGACGATCGTGTTAGTGAGCGATGGGCAAGCGTCAGGTATG
CAAAAATCAATGCTCTCCGAATATGCCGAAAGGCTGAAGAAATCTGGCAC
GTTGCTTGTGACGGCGGCCATCGGCTGCGACGCGGATATTGAGCTGCTCA
AGGACATCGCCAGCATAGAACAATTTTTCGTGGACCTGAACGAAGACCAC
AGAAAGGTGTGCGAACAAGGGCAGAGAGCAGTGGAATTGATTTGCACAGG
GGATTTTGCCAGCGGCGGAACATGTGGCGGTTGTGACTGCTGCGAATGCA
CAAGTTGCGGATGCAACAACGGGGGTGGCGGCGGTGACACCGACTGTGAG
AAAGCGTTCGATGAATGCGAGTTCACGTTTGAAGGGCACGATAAACTAGC
TACTTTCAACGCCACGGGACGCGCAGACAAGAGCTTCACGCCACTGATTG
TGTCCAAGGACAAGGGCGTAGAGGTGGGTGTGCTGAACATGAACGACGTC
ATACCGCAATTCATAGACGAAAATGGCGCACATGAGATCACGGAATTCGG
ATCGCAGCCCTTTACGCCTACTAACTTCAAGCCGTACTCGGTTAAGAGGA
CTCATGGCTCGGGTATCGGCCATGAGACTTACCATGCCGAGCAGGGGCAG
CTGGCTCGCGACAAGTGTGTGCGGGTCTTCTTCACGAGTATGCAGGTGTG
GAATGGAGACGAAGCTACGAATTTGAATGACCTGCCGAAGAGCAAGTGCG
TGGTGTTCCGCACCATGTAG
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protein sequence of Ggra1028.t1

>Ggra1028.t1 ID=Ggra1028.t1|Name=Ggra1028.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=390bp
MFTVLFGAELSDSLPTQPPTPPPQWSCNINPSADVGPCQTGNVCFAIDQS
DTISTEEYRKENRFVSQFAAMTRKYSASQILSAVAFADDAEVIQSPTDSL
SDFLDAVDSSRRFDGEKSFVAAFNKCHQLLRCARGKKTIVLVSDGQASGM
QKSMLSEYAERLKKSGTLLVTAAIGCDADIELLKDIASIEQFFVDLNEDH
RKVCEQGQRAVELICTGDFASGGTCGGCDCCECTSCGCNNGGGGGDTDCE
KAFDECEFTFEGHDKLATFNATGRADKSFTPLIVSKDKGVEVGVLNMNDV
IPQFIDENGAHEITEFGSQPFTPTNFKPYSVKRTHGSGIGHETYHAEQGQ
LARDKCVRVFFTSMQVWNGDEATNLNDLPKSKCVVFRTM*
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mRNA from alignment at tig00000027_pilon:661292..662461+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1028.t1 ID=Ggra1028.t1|Name=Ggra1028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00000027_pilon:661292..662461+ (Gracilaria gracilis GNS1m male)
ATGTTCACCGTACTTTTTGGCGCCGAACTCTCAGACTCCTTGCCTACCCA
ACCACCTACCCCTCCTCCCCAATGGTCGTGCAACATTAATCCATCGGCCG
ATGTCGGACCTTGCCAAACGGGCAACGTATGCTTCGCAATCGATCAATCA
GACACGATAAGCACGGAGGAGTATCGCAAAGAAAACAGATTTGTGTCCCA
ATTTGCCGCGATGACCAGAAAATATTCGGCTTCGCAGATCCTCTCCGCAG
TAGCATTCGCAGACGACGCAGAGGTGATTCAAAGCCCCACAGACAGCCTG
TCCGACTTCCTAGACGCCGTCGATAGTTCTCGTCGTTTTGACGGGGAGAA
GTCGTTCGTTGCCGCATTTAACAAGTGCCATCAGCTGCTGCGGTGCGCCC
GGGGAAAGAAGACGATCGTGTTAGTGAGCGATGGGCAAGCGTCAGGTATG
CAAAAATCAATGCTCTCCGAATATGCCGAAAGGCTGAAGAAATCTGGCAC
GTTGCTTGTGACGGCGGCCATCGGCTGCGACGCGGATATTGAGCTGCTCA
AGGACATCGCCAGCATAGAACAATTTTTCGTGGACCTGAACGAAGACCAC
AGAAAGGTGTGCGAACAAGGGCAGAGAGCAGTGGAATTGATTTGCACAGG
GGATTTTGCCAGCGGCGGAACATGTGGCGGTTGTGACTGCTGCGAATGCA
CAAGTTGCGGATGCAACAACGGGGGTGGCGGCGGTGACACCGACTGTGAG
AAAGCGTTCGATGAATGCGAGTTCACGTTTGAAGGGCACGATAAACTAGC
TACTTTCAACGCCACGGGACGCGCAGACAAGAGCTTCACGCCACTGATTG
TGTCCAAGGACAAGGGCGTAGAGGTGGGTGTGCTGAACATGAACGACGTC
ATACCGCAATTCATAGACGAAAATGGCGCACATGAGATCACGGAATTCGG
ATCGCAGCCCTTTACGCCTACTAACTTCAAGCCGTACTCGGTTAAGAGGA
CTCATGGCTCGGGTATCGGCCATGAGACTTACCATGCCGAGCAGGGGCAG
CTGGCTCGCGACAAGTGTGTGCGGGTCTTCTTCACGAGTATGCAGGTGTG
GAATGGAGACGAAGCTACGAATTTGAATGACCTGCCGAAGAGCAAGTGCG
TGGTGTTCCGCACCATGTAG
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Coding sequence (CDS) from alignment at tig00000027_pilon:661292..662461+

>Ggra1028.t1 ID=Ggra1028.t1|Name=Ggra1028.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1170bp|location=Sequence derived from alignment at tig00000027_pilon:661292..662461+ (Gracilaria gracilis GNS1m male)
ATGTTCACCGTACTTTTTGGCGCCGAACTCTCAGACTCCTTGCCTACCCA
ACCACCTACCCCTCCTCCCCAATGGTCGTGCAACATTAATCCATCGGCCG
ATGTCGGACCTTGCCAAACGGGCAACGTATGCTTCGCAATCGATCAATCA
GACACGATAAGCACGGAGGAGTATCGCAAAGAAAACAGATTTGTGTCCCA
ATTTGCCGCGATGACCAGAAAATATTCGGCTTCGCAGATCCTCTCCGCAG
TAGCATTCGCAGACGACGCAGAGGTGATTCAAAGCCCCACAGACAGCCTG
TCCGACTTCCTAGACGCCGTCGATAGTTCTCGTCGTTTTGACGGGGAGAA
GTCGTTCGTTGCCGCATTTAACAAGTGCCATCAGCTGCTGCGGTGCGCCC
GGGGAAAGAAGACGATCGTGTTAGTGAGCGATGGGCAAGCGTCAGGTATG
CAAAAATCAATGCTCTCCGAATATGCCGAAAGGCTGAAGAAATCTGGCAC
GTTGCTTGTGACGGCGGCCATCGGCTGCGACGCGGATATTGAGCTGCTCA
AGGACATCGCCAGCATAGAACAATTTTTCGTGGACCTGAACGAAGACCAC
AGAAAGGTGTGCGAACAAGGGCAGAGAGCAGTGGAATTGATTTGCACAGG
GGATTTTGCCAGCGGCGGAACATGTGGCGGTTGTGACTGCTGCGAATGCA
CAAGTTGCGGATGCAACAACGGGGGTGGCGGCGGTGACACCGACTGTGAG
AAAGCGTTCGATGAATGCGAGTTCACGTTTGAAGGGCACGATAAACTAGC
TACTTTCAACGCCACGGGACGCGCAGACAAGAGCTTCACGCCACTGATTG
TGTCCAAGGACAAGGGCGTAGAGGTGGGTGTGCTGAACATGAACGACGTC
ATACCGCAATTCATAGACGAAAATGGCGCACATGAGATCACGGAATTCGG
ATCGCAGCCCTTTACGCCTACTAACTTCAAGCCGTACTCGGTTAAGAGGA
CTCATGGCTCGGGTATCGGCCATGAGACTTACCATGCCGAGCAGGGGCAG
CTGGCTCGCGACAAGTGTGTGCGGGTCTTCTTCACGAGTATGCAGGTGTG
GAATGGAGACGAAGCTACGAATTTGAATGACCTGCCGAAGAGCAAGTGCG
TGGTGTTCCGCACCATGTAG
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