Ggra10278.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10278.t1
Unique NameGgra10278.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:359275..360146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708465.1
Preferred nameARL1
PFAMsArf
Max annot lvl2759|Eukaryota
KEGG koko:K07942,ko:K07977
GOsGO:0000045,GO:0000139,GO:0000166,GO:0001505,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006403,GO:0006605,GO:0006623,GO:0006810,GO:0006836,GO:0006886,GO:0006892,GO:0006893,GO:0006897,GO:0006914,GO:0006950,GO:0006996,GO:0007029,GO:0007030,GO:0007033,GO:0007034,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007431,GO:0007444,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009404,GO:0009888,GO:0009987,GO:0010256,GO:0010517,GO:0010518,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019748,GO:0019904,GO:0022607,GO:0023052,GO:0023061,GO:0030234,GO:0030334,GO:0031090,GO:0031503,GO:0031584,GO:0031984,GO:0032258,GO:0032386,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033157,GO:0033227,GO:0033363,GO:0033365,GO:0033554,GO:0034067,GO:0034497,GO:0034613,GO:0034629,GO:0034976,GO:0035220,GO:0035272,GO:0035295,GO:0035639,GO:0036094,GO:0036465,GO:0040012,GO:0042147,GO:0042886,GO:0043001,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048488,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051270,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0060191,GO:0060193,GO:0060341,GO:0060429,GO:0060627,GO:0060628,GO:0061024,GO:0061919,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070727,GO:0070861,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0072659,GO:0072665,GO:0072666,GO:0090087,GO:0090150,GO:0090158,GO:0097159,GO:0097367,GO:0098588,GO:0098657,GO:0098772,GO:0098791,GO:0098876,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:1901265,GO:1901363,GO:1903292,GO:1903827,GO:1905037,GO:1990778,GO:2000145
Evalue5.05e-82
EggNOG OGsCOG1100@1|root,KOG0072@2759|Eukaryota
DescriptionGTP binding
COG categoryK
BRITEko00000,ko04031,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10278Ggra10278Gracilaria gracilis GNS1m malegenetig00000016_pilon 359275..360146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10278.t1Ggra10278.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 359275..360146 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10278.t1.stop1Ggra10278.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 359275..359277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10278.t1.CDS1Ggra10278.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 359275..359651 -
Ggra10278.t1.CDS2Ggra10278.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 359746..359772 -
Ggra10278.t1.CDS3Ggra10278.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 359898..359957 -
Ggra10278.t1.CDS4Ggra10278.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000016_pilon 360065..360146 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10278.t1.exon1Ggra10278.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 359275..359651 -
Ggra10278.t1.exon2Ggra10278.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 359746..359772 -
Ggra10278.t1.exon3Ggra10278.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 359898..359957 -
Ggra10278.t1.exon4Ggra10278.t1.exon4Gracilaria gracilis GNS1m maleexontig00000016_pilon 360065..360146 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10278.t1.intron1Ggra10278.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 359652..359745 -
Ggra10278.t1.intron2Ggra10278.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 359773..359897 -
Ggra10278.t1.intron3Ggra10278.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000016_pilon 359958..360064 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10278.t1.start1Ggra10278.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 360144..360146 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10278.t1 ID=Ggra10278.t1|Name=Ggra10278.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=182bp
MGAALSRLIASLFGDKEIRILILGLDNAGKTSILYRMKEGTFHSTVPTIG
FNAEQLEIGKLKAQVWDLGGQESIRPYWRSYYQEQEAVIFVVDSCDKDRM
QIAKRELMSIIEEDELKNAVVCVFANKQDMPEALAAAEIAEALGLSSIVD
KKWTIIATSALRGDGLKEGFEWISEAVQSKA*
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spliced messenger RNA

>Ggra10278.t1 ID=Ggra10278.t1|Name=Ggra10278.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000016_pilon:359275..360146- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCCGCATTGTCTCGCTTAATAGCGTCGCTGTTTGGCGACAAAGA
GATTAGAATTCTTATTCTCGGGCTCGATAATGCGGGCAAGACATCAATAC
TATACCGAATGAAAGAGGGTACCTTTCATAGCACTGTACCGACGATTGGC
TTTAATGCGGAGCAACTCGAGATTGGCAAATTAAAGGCTCAAGTATGGGA
CTTGGGTGGCCAAGAGAGTATAAGACCCTACTGGAGATCGTATTATCAAG
AACAAGAAGCTGTAATATTCGTCGTTGATAGTTGTGACAAAGATCGCATG
CAAATCGCAAAACGCGAACTTATGAGTATTATAGAGGAAGACGAGTTGAA
GAACGCCGTGGTTTGTGTTTTCGCCAACAAACAAGACATGCCAGAAGCCC
TCGCTGCCGCCGAAATCGCAGAGGCGTTGGGTTTATCTTCAATTGTTGAC
AAGAAATGGACCATTATTGCAACAAGTGCACTGCGAGGGGATGGCCTTAA
AGAAGGCTTTGAATGGATTTCAGAAGCTGTACAGTCGAAGGCATGA
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protein sequence of Ggra10278.t1

>Ggra10278.t1 ID=Ggra10278.t1|Name=Ggra10278.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=182bp
MGAALSRLIASLFGDKEIRILILGLDNAGKTSILYRMKEGTFHSTVPTIG
FNAEQLEIGKLKAQVWDLGGQESIRPYWRSYYQEQEAVIFVVDSCDKDRM
QIAKRELMSIIEEDELKNAVVCVFANKQDMPEALAAAEIAEALGLSSIVD
KKWTIIATSALRGDGLKEGFEWISEAVQSKA*
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mRNA from alignment at tig00000016_pilon:359275..360146-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10278.t1 ID=Ggra10278.t1|Name=Ggra10278.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=872bp|location=Sequence derived from alignment at tig00000016_pilon:359275..360146- (Gracilaria gracilis GNS1m male)
ATGGGAGCCGCATTGTCTCGCTTAATAGCGTCGCTGTTTGGCGACAAAGA
GATTAGAATTCTTATTCTCGGGCTCGATAATGGTATGTCTTGCGCTCCGA
CACACAACAACCGCCGCCAGTAGCTGACTGCCCACTTATGCCGTGCGATG
CGACCTATGTGCACAATTTGTTGGTTTCATGCGAAACAGCGGGCAAGACA
TCAATACTATACCGAATGAAAGAGGGTACCTTTCATAGCACTGTACCGAG
TACGTTTATTGCTTTCACGCGTTGCCTCTTGACTGATCATCGATCCGGAG
CACCATTGCTTTTTGAATGAGCATAATCACTCACAACCTTGTTCTCGCCT
GCCCCTCTTTTTGCATTTCGATAGCGATTGGCTTTAATGCGGAGCAACTC
GGTATGTTATGAATCATTCCCACCGGCGGTATGCATACTCCAACCACATT
TTCGGCGAGTGGCTAACCTGCGCACATTTACGAACATCAAAACAGAGATT
GGCAAATTAAAGGCTCAAGTATGGGACTTGGGTGGCCAAGAGAGTATAAG
ACCCTACTGGAGATCGTATTATCAAGAACAAGAAGCTGTAATATTCGTCG
TTGATAGTTGTGACAAAGATCGCATGCAAATCGCAAAACGCGAACTTATG
AGTATTATAGAGGAAGACGAGTTGAAGAACGCCGTGGTTTGTGTTTTCGC
CAACAAACAAGACATGCCAGAAGCCCTCGCTGCCGCCGAAATCGCAGAGG
CGTTGGGTTTATCTTCAATTGTTGACAAGAAATGGACCATTATTGCAACA
AGTGCACTGCGAGGGGATGGCCTTAAAGAAGGCTTTGAATGGATTTCAGA
AGCTGTACAGTCGAAGGCATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:359275..360146-

>Ggra10278.t1 ID=Ggra10278.t1|Name=Ggra10278.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00000016_pilon:359275..360146- (Gracilaria gracilis GNS1m male)
ATGGGAGCCGCATTGTCTCGCTTAATAGCGTCGCTGTTTGGCGACAAAGA
GATTAGAATTCTTATTCTCGGGCTCGATAATGCGGGCAAGACATCAATAC
TATACCGAATGAAAGAGGGTACCTTTCATAGCACTGTACCGACGATTGGC
TTTAATGCGGAGCAACTCGAGATTGGCAAATTAAAGGCTCAAGTATGGGA
CTTGGGTGGCCAAGAGAGTATAAGACCCTACTGGAGATCGTATTATCAAG
AACAAGAAGCTGTAATATTCGTCGTTGATAGTTGTGACAAAGATCGCATG
CAAATCGCAAAACGCGAACTTATGAGTATTATAGAGGAAGACGAGTTGAA
GAACGCCGTGGTTTGTGTTTTCGCCAACAAACAAGACATGCCAGAAGCCC
TCGCTGCCGCCGAAATCGCAGAGGCGTTGGGTTTATCTTCAATTGTTGAC
AAGAAATGGACCATTATTGCAACAAGTGCACTGCGAGGGGATGGCCTTAA
AGAAGGCTTTGAATGGATTTCAGAAGCTGTACAGTCGAAGGCATGA
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