Ggra10277.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10277.t1
Unique Name	Ggra10277.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	439

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:357658..358974 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005647813.1
PFAMs	2-Hacid_dh,2-Hacid_dh_C
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC00031
KEGG ko	ko:K00058
KEGG Reaction	R01513
KEGG Pathway	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG Module	M00020
Evalue	3.69e-173
EggNOG OGs	COG0111@1\|root,KOG0068@2759\|Eukaryota,37YAY@33090\|Viridiplantae,34JHT@3041\|Chlorophyta
EC	1.1.1.399,1.1.1.95
Description	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10277	Ggra10277	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 357658..358974 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10277.t1.start1	Ggra10277.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 357658..357660 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10277.t1.CDS1	Ggra10277.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 357658..358974 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10277.t1.exon1	Ggra10277.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 357658..358974 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10277.t1.stop1	Ggra10277.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 358972..358974 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10277.t1	Ggra10277.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 357658..358974 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:357658..358974+
coding sequence from alignment at tig00000016_pilon:357658..358974+

mRNA sequence

>Ggra10277.t1 ID=Ggra10277.t1|Name=Ggra10277.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=439bp
MPTSPLLSTSPPNGLAPLLAASPVESFMDRVPQYSFAKSKIKVLILENIH
QSAVNIFNSETFNIETVPKALLEKELVDRIRGVHLLCIRSKTKVTKAVVQ
AADKLLAIGCFCIGTDQVDLVAAEEHGIPVFNAPFSNTRSVAELVIGEII
ALSRKLCDKSRDAHKGTWSKTAKGCAEVRGKTLGIIGYGHIGSQLSVLAE
ALGLKVIYYDVVSVLPIGNGQAVGSMDELFAAADFVSLHVPKAPSTNNLI
SSTELAKMKKGSYLINASRGTVVDIDALACALKEGHLAGAAVDVFPSEPA
KNGPGFESPLCGLENVILSPHIGGSTAEAQQNIGIEVSTALIKHVNLGAT
IGAVNFPNLDLPISVDCHRILNVHRNVPGVLTAINGILSDTKSNVTAQML
GTSTTIGYIIIDLNKETSGDTKSAISDLETSISTRILF*

spliced messenger RNA

>Ggra10277.t1 ID=Ggra10277.t1|Name=Ggra10277.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000016_pilon:357658..358974+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAACCTCCCCGCTTCTTTCTACATCGCCGCCGAACGGTCTGGCCCC
TCTCTTGGCAGCTTCTCCAGTAGAGTCCTTCATGGATCGTGTGCCGCAGT
ATTCCTTTGCTAAGTCGAAGATTAAAGTGCTGATCTTGGAGAACATTCAC
CAATCTGCCGTTAACATTTTCAACTCAGAGACGTTTAACATTGAAACGGT
GCCTAAAGCGCTCCTTGAGAAAGAGCTTGTTGATCGTATCCGTGGCGTTC
ATCTCCTATGTATCAGATCGAAAACGAAAGTTACTAAAGCGGTTGTACAA
GCGGCGGACAAGTTGCTTGCAATTGGATGCTTTTGCATAGGCACAGATCA
AGTCGATCTTGTTGCGGCTGAGGAGCACGGTATTCCTGTTTTCAACGCTC
CTTTCTCGAACACTCGTTCGGTTGCGGAGCTCGTCATCGGGGAGATCATA
GCTCTTTCACGGAAGCTATGTGATAAATCCCGGGATGCCCACAAGGGCAC
ATGGAGCAAGACTGCTAAAGGCTGTGCAGAAGTCCGCGGAAAAACACTCG
GTATCATTGGGTACGGGCATATTGGTTCTCAGCTGTCTGTGCTGGCTGAA
GCCCTTGGTCTGAAAGTCATTTATTACGATGTCGTTTCTGTGCTTCCCAT
CGGAAATGGACAAGCTGTTGGCTCCATGGATGAGCTCTTTGCTGCAGCTG
ATTTTGTTTCCCTTCATGTTCCGAAGGCCCCCTCGACTAACAATTTGATT
TCTAGTACCGAACTAGCCAAGATGAAGAAGGGCTCCTATCTAATTAACGC
TTCTCGTGGTACTGTGGTGGACATCGATGCTTTGGCTTGCGCTTTGAAAG
AAGGCCACTTAGCCGGAGCTGCTGTAGACGTGTTCCCGTCAGAGCCAGCG
AAGAACGGACCTGGATTTGAGTCTCCTCTTTGCGGACTGGAAAACGTGAT
TCTTTCGCCCCATATTGGAGGATCCACAGCCGAGGCACAGCAGAACATTG
GCATCGAAGTGTCAACAGCCCTCATCAAGCATGTGAACCTCGGCGCCACG
ATTGGTGCTGTGAACTTTCCCAATCTTGACCTGCCAATTTCTGTCGATTG
TCACAGGATTCTCAACGTGCATCGAAACGTACCAGGCGTGCTCACTGCCA
TCAATGGCATCTTATCAGATACGAAGAGCAATGTCACCGCTCAAATGCTT
GGTACCTCCACTACCATTGGCTACATAATCATCGATCTTAACAAGGAGAC
GAGTGGTGACACCAAGTCAGCCATTTCTGACCTGGAAACCTCAATATCCA
CCAGAATTCTTTTCTAA

protein sequence of Ggra10277.t1

>Ggra10277.t1 ID=Ggra10277.t1|Name=Ggra10277.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=439bp
MPTSPLLSTSPPNGLAPLLAASPVESFMDRVPQYSFAKSKIKVLILENIH
QSAVNIFNSETFNIETVPKALLEKELVDRIRGVHLLCIRSKTKVTKAVVQ
AADKLLAIGCFCIGTDQVDLVAAEEHGIPVFNAPFSNTRSVAELVIGEII
ALSRKLCDKSRDAHKGTWSKTAKGCAEVRGKTLGIIGYGHIGSQLSVLAE
ALGLKVIYYDVVSVLPIGNGQAVGSMDELFAAADFVSLHVPKAPSTNNLI
SSTELAKMKKGSYLINASRGTVVDIDALACALKEGHLAGAAVDVFPSEPA
KNGPGFESPLCGLENVILSPHIGGSTAEAQQNIGIEVSTALIKHVNLGAT
IGAVNFPNLDLPISVDCHRILNVHRNVPGVLTAINGILSDTKSNVTAQML
GTSTTIGYIIIDLNKETSGDTKSAISDLETSISTRILF*

mRNA from alignment at tig00000016_pilon:357658..358974+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10277.t1 ID=Ggra10277.t1|Name=Ggra10277.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000016_pilon:357658..358974+ (Gracilaria gracilis GNS1m male)
ATGCCAACCTCCCCGCTTCTTTCTACATCGCCGCCGAACGGTCTGGCCCC
TCTCTTGGCAGCTTCTCCAGTAGAGTCCTTCATGGATCGTGTGCCGCAGT
ATTCCTTTGCTAAGTCGAAGATTAAAGTGCTGATCTTGGAGAACATTCAC
CAATCTGCCGTTAACATTTTCAACTCAGAGACGTTTAACATTGAAACGGT
GCCTAAAGCGCTCCTTGAGAAAGAGCTTGTTGATCGTATCCGTGGCGTTC
ATCTCCTATGTATCAGATCGAAAACGAAAGTTACTAAAGCGGTTGTACAA
GCGGCGGACAAGTTGCTTGCAATTGGATGCTTTTGCATAGGCACAGATCA
AGTCGATCTTGTTGCGGCTGAGGAGCACGGTATTCCTGTTTTCAACGCTC
CTTTCTCGAACACTCGTTCGGTTGCGGAGCTCGTCATCGGGGAGATCATA
GCTCTTTCACGGAAGCTATGTGATAAATCCCGGGATGCCCACAAGGGCAC
ATGGAGCAAGACTGCTAAAGGCTGTGCAGAAGTCCGCGGAAAAACACTCG
GTATCATTGGGTACGGGCATATTGGTTCTCAGCTGTCTGTGCTGGCTGAA
GCCCTTGGTCTGAAAGTCATTTATTACGATGTCGTTTCTGTGCTTCCCAT
CGGAAATGGACAAGCTGTTGGCTCCATGGATGAGCTCTTTGCTGCAGCTG
ATTTTGTTTCCCTTCATGTTCCGAAGGCCCCCTCGACTAACAATTTGATT
TCTAGTACCGAACTAGCCAAGATGAAGAAGGGCTCCTATCTAATTAACGC
TTCTCGTGGTACTGTGGTGGACATCGATGCTTTGGCTTGCGCTTTGAAAG
AAGGCCACTTAGCCGGAGCTGCTGTAGACGTGTTCCCGTCAGAGCCAGCG
AAGAACGGACCTGGATTTGAGTCTCCTCTTTGCGGACTGGAAAACGTGAT
TCTTTCGCCCCATATTGGAGGATCCACAGCCGAGGCACAGCAGAACATTG
GCATCGAAGTGTCAACAGCCCTCATCAAGCATGTGAACCTCGGCGCCACG
ATTGGTGCTGTGAACTTTCCCAATCTTGACCTGCCAATTTCTGTCGATTG
TCACAGGATTCTCAACGTGCATCGAAACGTACCAGGCGTGCTCACTGCCA
TCAATGGCATCTTATCAGATACGAAGAGCAATGTCACCGCTCAAATGCTT
GGTACCTCCACTACCATTGGCTACATAATCATCGATCTTAACAAGGAGAC
GAGTGGTGACACCAAGTCAGCCATTTCTGACCTGGAAACCTCAATATCCA
CCAGAATTCTTTTCTAA

Coding sequence (CDS) from alignment at tig00000016_pilon:357658..358974+

>Ggra10277.t1 ID=Ggra10277.t1|Name=Ggra10277.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1317bp|location=Sequence derived from alignment at tig00000016_pilon:357658..358974+ (Gracilaria gracilis GNS1m male)
ATGCCAACCTCCCCGCTTCTTTCTACATCGCCGCCGAACGGTCTGGCCCC
TCTCTTGGCAGCTTCTCCAGTAGAGTCCTTCATGGATCGTGTGCCGCAGT
ATTCCTTTGCTAAGTCGAAGATTAAAGTGCTGATCTTGGAGAACATTCAC
CAATCTGCCGTTAACATTTTCAACTCAGAGACGTTTAACATTGAAACGGT
GCCTAAAGCGCTCCTTGAGAAAGAGCTTGTTGATCGTATCCGTGGCGTTC
ATCTCCTATGTATCAGATCGAAAACGAAAGTTACTAAAGCGGTTGTACAA
GCGGCGGACAAGTTGCTTGCAATTGGATGCTTTTGCATAGGCACAGATCA
AGTCGATCTTGTTGCGGCTGAGGAGCACGGTATTCCTGTTTTCAACGCTC
CTTTCTCGAACACTCGTTCGGTTGCGGAGCTCGTCATCGGGGAGATCATA
GCTCTTTCACGGAAGCTATGTGATAAATCCCGGGATGCCCACAAGGGCAC
ATGGAGCAAGACTGCTAAAGGCTGTGCAGAAGTCCGCGGAAAAACACTCG
GTATCATTGGGTACGGGCATATTGGTTCTCAGCTGTCTGTGCTGGCTGAA
GCCCTTGGTCTGAAAGTCATTTATTACGATGTCGTTTCTGTGCTTCCCAT
CGGAAATGGACAAGCTGTTGGCTCCATGGATGAGCTCTTTGCTGCAGCTG
ATTTTGTTTCCCTTCATGTTCCGAAGGCCCCCTCGACTAACAATTTGATT
TCTAGTACCGAACTAGCCAAGATGAAGAAGGGCTCCTATCTAATTAACGC
TTCTCGTGGTACTGTGGTGGACATCGATGCTTTGGCTTGCGCTTTGAAAG
AAGGCCACTTAGCCGGAGCTGCTGTAGACGTGTTCCCGTCAGAGCCAGCG
AAGAACGGACCTGGATTTGAGTCTCCTCTTTGCGGACTGGAAAACGTGAT
TCTTTCGCCCCATATTGGAGGATCCACAGCCGAGGCACAGCAGAACATTG
GCATCGAAGTGTCAACAGCCCTCATCAAGCATGTGAACCTCGGCGCCACG
ATTGGTGCTGTGAACTTTCCCAATCTTGACCTGCCAATTTCTGTCGATTG
TCACAGGATTCTCAACGTGCATCGAAACGTACCAGGCGTGCTCACTGCCA
TCAATGGCATCTTATCAGATACGAAGAGCAATGTCACCGCTCAAATGCTT
GGTACCTCCACTACCATTGGCTACATAATCATCGATCTTAACAAGGAGAC
GAGTGGTGACACCAAGTCAGCCATTTCTGACCTGGAAACCTCAATATCCA
CCAGAATTCTTTTCTAA