Ggra10276.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10276.t1
Unique NameGgra10276.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:356037..356957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10276Ggra10276Gracilaria gracilis GNS1m malegenetig00000016_pilon 356037..356957 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10276.t1.start1Ggra10276.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 356037..356039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10276.t1.CDS1Ggra10276.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 356037..356957 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10276.t1.exon1Ggra10276.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 356037..356957 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10276.t1.stop1Ggra10276.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 356955..356957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10276.t1Ggra10276.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 356037..356957 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10276.t1 ID=Ggra10276.t1|Name=Ggra10276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=307bp
MQAAFVTLSKPLAHSDTSPAICKRRPRIHHRPVIWTITSRRGIQKDTQNT
PPPDGETPANDSRRRRMPMPPETRKKISDALKGRRKSAEHRESLRRRFEG
SQNPMYGRKRSAESRAKISRAMAAKAKQKKSAEQPDKPPVQEEALDQLRE
KAKESRLITSVTEEPEKRVRRRAAHDELESAHVDRILKRVAKFEQPPESV
VRALNSNREKRITRANQRRIENRSQELPPNEQPSQIPNPQPEANKRSRTS
EAKNKAHAKCSLCKGTGLMECPRCIISGIPSSRCELCFGAGGVFCDTCNG
VGALVE*
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spliced messenger RNA

>Ggra10276.t1 ID=Ggra10276.t1|Name=Ggra10276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000016_pilon:356037..356957+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCAGCCTTCGTAACTCTGTCGAAGCCGCTGGCGCATTCTGATAC
CTCACCTGCAATATGCAAAAGGCGACCCAGAATACATCATCGTCCAGTCA
TCTGGACAATAACCTCGCGACGAGGAATACAAAAAGACACCCAAAACACC
CCTCCACCGGATGGCGAAACGCCAGCGAACGATAGCAGGAGACGACGGAT
GCCCATGCCACCTGAAACGCGCAAGAAGATATCTGATGCGCTCAAGGGTC
GTCGAAAGTCCGCTGAGCACCGGGAATCCCTTCGCCGTCGCTTTGAAGGA
TCTCAGAACCCAATGTACGGACGCAAGCGTTCCGCTGAGAGCCGGGCGAA
GATTTCTCGCGCAATGGCCGCCAAAGCTAAGCAAAAGAAGTCAGCGGAGC
AACCTGATAAGCCTCCAGTGCAAGAAGAAGCGCTCGATCAGCTAAGAGAA
AAGGCCAAGGAATCCAGGTTAATCACATCCGTTACAGAGGAACCAGAGAA
GCGTGTGCGGAGGAGAGCAGCTCATGATGAACTAGAATCTGCTCATGTGG
ACAGAATACTCAAGAGAGTGGCCAAATTCGAACAACCTCCGGAATCCGTT
GTAAGAGCCCTCAATAGCAATCGCGAAAAGCGGATAACCAGAGCGAATCA
AAGACGTATAGAAAATCGCTCGCAAGAGCTTCCACCCAATGAACAGCCAT
CACAAATACCAAACCCGCAGCCCGAGGCGAACAAACGATCAAGAACATCA
GAAGCAAAGAACAAGGCTCATGCGAAGTGCTCCCTTTGCAAAGGAACGGG
GTTGATGGAATGCCCCAGATGCATCATTTCTGGCATCCCGAGTTCTCGAT
GTGAATTATGTTTCGGTGCTGGTGGAGTGTTCTGTGACACCTGCAATGGT
GTCGGGGCTTTAGTGGAATGA
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protein sequence of Ggra10276.t1

>Ggra10276.t1 ID=Ggra10276.t1|Name=Ggra10276.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=307bp
MQAAFVTLSKPLAHSDTSPAICKRRPRIHHRPVIWTITSRRGIQKDTQNT
PPPDGETPANDSRRRRMPMPPETRKKISDALKGRRKSAEHRESLRRRFEG
SQNPMYGRKRSAESRAKISRAMAAKAKQKKSAEQPDKPPVQEEALDQLRE
KAKESRLITSVTEEPEKRVRRRAAHDELESAHVDRILKRVAKFEQPPESV
VRALNSNREKRITRANQRRIENRSQELPPNEQPSQIPNPQPEANKRSRTS
EAKNKAHAKCSLCKGTGLMECPRCIISGIPSSRCELCFGAGGVFCDTCNG
VGALVE*
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mRNA from alignment at tig00000016_pilon:356037..356957+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10276.t1 ID=Ggra10276.t1|Name=Ggra10276.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000016_pilon:356037..356957+ (Gracilaria gracilis GNS1m male)
ATGCAGGCAGCCTTCGTAACTCTGTCGAAGCCGCTGGCGCATTCTGATAC
CTCACCTGCAATATGCAAAAGGCGACCCAGAATACATCATCGTCCAGTCA
TCTGGACAATAACCTCGCGACGAGGAATACAAAAAGACACCCAAAACACC
CCTCCACCGGATGGCGAAACGCCAGCGAACGATAGCAGGAGACGACGGAT
GCCCATGCCACCTGAAACGCGCAAGAAGATATCTGATGCGCTCAAGGGTC
GTCGAAAGTCCGCTGAGCACCGGGAATCCCTTCGCCGTCGCTTTGAAGGA
TCTCAGAACCCAATGTACGGACGCAAGCGTTCCGCTGAGAGCCGGGCGAA
GATTTCTCGCGCAATGGCCGCCAAAGCTAAGCAAAAGAAGTCAGCGGAGC
AACCTGATAAGCCTCCAGTGCAAGAAGAAGCGCTCGATCAGCTAAGAGAA
AAGGCCAAGGAATCCAGGTTAATCACATCCGTTACAGAGGAACCAGAGAA
GCGTGTGCGGAGGAGAGCAGCTCATGATGAACTAGAATCTGCTCATGTGG
ACAGAATACTCAAGAGAGTGGCCAAATTCGAACAACCTCCGGAATCCGTT
GTAAGAGCCCTCAATAGCAATCGCGAAAAGCGGATAACCAGAGCGAATCA
AAGACGTATAGAAAATCGCTCGCAAGAGCTTCCACCCAATGAACAGCCAT
CACAAATACCAAACCCGCAGCCCGAGGCGAACAAACGATCAAGAACATCA
GAAGCAAAGAACAAGGCTCATGCGAAGTGCTCCCTTTGCAAAGGAACGGG
GTTGATGGAATGCCCCAGATGCATCATTTCTGGCATCCCGAGTTCTCGAT
GTGAATTATGTTTCGGTGCTGGTGGAGTGTTCTGTGACACCTGCAATGGT
GTCGGGGCTTTAGTGGAATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:356037..356957+

>Ggra10276.t1 ID=Ggra10276.t1|Name=Ggra10276.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000016_pilon:356037..356957+ (Gracilaria gracilis GNS1m male)
ATGCAGGCAGCCTTCGTAACTCTGTCGAAGCCGCTGGCGCATTCTGATAC
CTCACCTGCAATATGCAAAAGGCGACCCAGAATACATCATCGTCCAGTCA
TCTGGACAATAACCTCGCGACGAGGAATACAAAAAGACACCCAAAACACC
CCTCCACCGGATGGCGAAACGCCAGCGAACGATAGCAGGAGACGACGGAT
GCCCATGCCACCTGAAACGCGCAAGAAGATATCTGATGCGCTCAAGGGTC
GTCGAAAGTCCGCTGAGCACCGGGAATCCCTTCGCCGTCGCTTTGAAGGA
TCTCAGAACCCAATGTACGGACGCAAGCGTTCCGCTGAGAGCCGGGCGAA
GATTTCTCGCGCAATGGCCGCCAAAGCTAAGCAAAAGAAGTCAGCGGAGC
AACCTGATAAGCCTCCAGTGCAAGAAGAAGCGCTCGATCAGCTAAGAGAA
AAGGCCAAGGAATCCAGGTTAATCACATCCGTTACAGAGGAACCAGAGAA
GCGTGTGCGGAGGAGAGCAGCTCATGATGAACTAGAATCTGCTCATGTGG
ACAGAATACTCAAGAGAGTGGCCAAATTCGAACAACCTCCGGAATCCGTT
GTAAGAGCCCTCAATAGCAATCGCGAAAAGCGGATAACCAGAGCGAATCA
AAGACGTATAGAAAATCGCTCGCAAGAGCTTCCACCCAATGAACAGCCAT
CACAAATACCAAACCCGCAGCCCGAGGCGAACAAACGATCAAGAACATCA
GAAGCAAAGAACAAGGCTCATGCGAAGTGCTCCCTTTGCAAAGGAACGGG
GTTGATGGAATGCCCCAGATGCATCATTTCTGGCATCCCGAGTTCTCGAT
GTGAATTATGTTTCGGTGCTGGTGGAGTGTTCTGTGACACCTGCAATGGT
GTCGGGGCTTTAGTGGAATGA
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