Ggra10273.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10273.t1
Unique NameGgra10273.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length88
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:349900..350277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10273Ggra10273Gracilaria gracilis GNS1m malegenetig00000016_pilon 349900..350277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10273.t1Ggra10273.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 349900..350277 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10273.t1.start1Ggra10273.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 349900..349902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10273.t1.CDS1Ggra10273.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 349900..350108 +
Ggra10273.t1.CDS2Ggra10273.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 350223..350277 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10273.t1.exon1Ggra10273.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 349900..350108 +
Ggra10273.t1.exon2Ggra10273.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 350223..350277 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10273.t1.intron1Ggra10273.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 350109..350222 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10273.t1.stop1Ggra10273.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 350275..350277 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10273.t1 ID=Ggra10273.t1|Name=Ggra10273.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=88bp
MLRSYNESHKGSARIAHAFGRRVAQKTGLIVGEAARLALGVLVAAKRYFD
WQCLRAVGTATSRMTRETVAVFNNPLTRRFHCFPIYF*
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spliced messenger RNA

>Ggra10273.t1 ID=Ggra10273.t1|Name=Ggra10273.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp|location=Sequence derived from alignment at tig00000016_pilon:349900..350277+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCGCTCGTATAATGAGAGCCACAAGGGATCAGCAAGAATTGCGCA
CGCTTTCGGGCGGCGCGTGGCGCAGAAGACAGGGCTTATCGTTGGAGAAG
CCGCCCGGCTGGCGTTGGGGGTTTTGGTAGCTGCAAAACGATATTTTGAT
TGGCAGTGTCTCCGTGCCGTCGGTACGGCCACTTCACGCATGACGAGGGA
GACTGtagcGGTCTTCAATAATCCGCTCACCCGCCGCTTTCATTGCTTTC
CCATATACTTTTGA
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protein sequence of Ggra10273.t1

>Ggra10273.t1 ID=Ggra10273.t1|Name=Ggra10273.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=88bp
MLRSYNESHKGSARIAHAFGRRVAQKTGLIVGEAARLALGVLVAAKRYFD
WQCLRAVGTATSRMTRETVAVFNNPLTRRFHCFPIYF*
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mRNA from alignment at tig00000016_pilon:349900..350277+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10273.t1 ID=Ggra10273.t1|Name=Ggra10273.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp|location=Sequence derived from alignment at tig00000016_pilon:349900..350277+ (Gracilaria gracilis GNS1m male)
ATGCTCCGCTCGTATAATGAGAGCCACAAGGGATCAGCAAGAATTGCGCA
CGCTTTCGGGCGGCGCGTGGCGCAGAAGACAGGGCTTATCGTTGGAGAAG
CCGCCCGGCTGGCGTTGGGGGTTTTGGTAGCTGCAAAACGATATTTTGAT
TGGCAGTGTCTCCGTGCCGTCGGTACGGCCACTTCACGCATGACGAGGGA
GACTGtagcgtaagttacactagtaagtgttcccacactaatattgcacc
cacactaattgCAGTGTGTACCTCTCTAACTGCTCCTCGTTCATTCCCTC
TCGTTGCGCTTTGAACCATCCAGGGTCTTCAATAATCCGCTCACCCGCCG
CTTTCATTGCTTTCCCATATACTTTTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:349900..350277+

>Ggra10273.t1 ID=Ggra10273.t1|Name=Ggra10273.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=264bp|location=Sequence derived from alignment at tig00000016_pilon:349900..350277+ (Gracilaria gracilis GNS1m male)
ATGCTCCGCTCGTATAATGAGAGCCACAAGGGATCAGCAAGAATTGCGCA
CGCTTTCGGGCGGCGCGTGGCGCAGAAGACAGGGCTTATCGTTGGAGAAG
CCGCCCGGCTGGCGTTGGGGGTTTTGGTAGCTGCAAAACGATATTTTGAT
TGGCAGTGTCTCCGTGCCGTCGGTACGGCCACTTCACGCATGACGAGGGA
GACTGtagcGGTCTTCAATAATCCGCTCACCCGCCGCTTTCATTGCTTTC
CCATATACTTTTGA
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