Ggra10269.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10269.t1
Unique NameGgra10269.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:299756..300538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1127692.HMPREF9075_01099
Preferred namemenG
PFAMsUbie_methyltran
Max annot lvl976|Bacteroidetes
KEGG rclassRC00003,RC01253,RC01662
KEGG koko:K03183
KEGG ReactionR04990,R04993,R06859,R08774,R09736
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00116,M00117
Evalue8.5e-48
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,4NEDR@976|Bacteroidetes,1HX52@117743|Flavobacteriia,1EQJ9@1016|Capnocytophaga
EC2.1.1.163,2.1.1.201
DescriptionMethyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2)
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10269Ggra10269Gracilaria gracilis GNS1m malegenetig00000016_pilon 299756..300538 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10269.t1.start1Ggra10269.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 299756..299758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10269.t1.CDS1Ggra10269.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 299756..300538 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10269.t1.exon1Ggra10269.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 299756..300538 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10269.t1.stop1Ggra10269.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 300536..300538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10269.t1Ggra10269.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 299756..300538 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10269.t1 ID=Ggra10269.t1|Name=Ggra10269.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=261bp
MLLPKILAATIAAVTCIVFSEETGKESCDVPGSGKFFDKIAARYDVLNQV
ISLGFHGSWKTSAIQKILPAEHVLDISTGTGDLAISLAANRSIRIVGLDP
SSEMLNIARDKVARFAENIGDVQLVEGVAEELPFESETFDAVTVAFGVRN
FQDTEKGLSEMSRVLRPHGRWAILEAGFSTGTGFLEKAHRIFVTRIMPKV
AGFFSGNRGAYEYLSDSMQKFPEVEDFVKMLEAAGLHVEAHQRLSPFEMG
PFLYSGSKSL*
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spliced messenger RNA

>Ggra10269.t1 ID=Ggra10269.t1|Name=Ggra10269.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000016_pilon:299756..300538+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTTCCAAAAATTCTCGCGGCGACAATCGCGGCAGTGACTTGCAT
TGTATTCAGTGAGGAAACTGGTAAAGAGTCATGTGATGTCCCAGGATCGG
GCAAGTTTTTCGACAAGATCGCCGCACGATATGATGTTCTGAACCAAGTA
ATATCGTTAGGATTTCATGGAAGCTGGAAAACCTCAGCGATTCAGAAGAT
CCTTCCGGCAGAACATGTCTTGGACATAAGCACTGGGACTGGGGATTTAG
CAATCTCCCTGGCGGCGAATCGTTCAATTCGAATCGTAGGCCTTGATCCT
TCTTCGGAAATGCTAAATATCGCTCGCGACAAAGTGGCCCGTTTTGCCGA
AAATATCGGTGACGTTCAACTTGTGGAGGGCGTAGCTGAAGAATTGCCGT
TTGAGAGTGAAACTTTTGATGCAGTGACCGTGGCGTTTGGAGTTCGAAAC
TTTCAGGACACTGAGAAAGGGCTTTCGGAAATGAGCCGAGTTCTTCGACC
ACATGGAAGGTGGGCGATACTAGAAGCAGGATTTTCAACAGGCACTGGTT
TTCTTGAAAAAGCTCACCGAATATTCGTTACTAGGATCATGCCGAAGGTG
GCAGGCTTCTTTTCTGGGAATCGTGGTGCTTACGAATACCTGAGCGATTC
AATGCAGAAGTTTCCGGAAGTTGAAGATTTTGTCAAGATGCTAGAGGCAG
CTGGATTGCATGTCGAAGCGCATCAGCGCTTGTCACCTTTTGAAATGGGT
CCGTTTCTCTACAGCGGCAGCAAGTCGCTATAG
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protein sequence of Ggra10269.t1

>Ggra10269.t1 ID=Ggra10269.t1|Name=Ggra10269.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=261bp
MLLPKILAATIAAVTCIVFSEETGKESCDVPGSGKFFDKIAARYDVLNQV
ISLGFHGSWKTSAIQKILPAEHVLDISTGTGDLAISLAANRSIRIVGLDP
SSEMLNIARDKVARFAENIGDVQLVEGVAEELPFESETFDAVTVAFGVRN
FQDTEKGLSEMSRVLRPHGRWAILEAGFSTGTGFLEKAHRIFVTRIMPKV
AGFFSGNRGAYEYLSDSMQKFPEVEDFVKMLEAAGLHVEAHQRLSPFEMG
PFLYSGSKSL*
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mRNA from alignment at tig00000016_pilon:299756..300538+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10269.t1 ID=Ggra10269.t1|Name=Ggra10269.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000016_pilon:299756..300538+ (Gracilaria gracilis GNS1m male)
ATGCTTCTTCCAAAAATTCTCGCGGCGACAATCGCGGCAGTGACTTGCAT
TGTATTCAGTGAGGAAACTGGTAAAGAGTCATGTGATGTCCCAGGATCGG
GCAAGTTTTTCGACAAGATCGCCGCACGATATGATGTTCTGAACCAAGTA
ATATCGTTAGGATTTCATGGAAGCTGGAAAACCTCAGCGATTCAGAAGAT
CCTTCCGGCAGAACATGTCTTGGACATAAGCACTGGGACTGGGGATTTAG
CAATCTCCCTGGCGGCGAATCGTTCAATTCGAATCGTAGGCCTTGATCCT
TCTTCGGAAATGCTAAATATCGCTCGCGACAAAGTGGCCCGTTTTGCCGA
AAATATCGGTGACGTTCAACTTGTGGAGGGCGTAGCTGAAGAATTGCCGT
TTGAGAGTGAAACTTTTGATGCAGTGACCGTGGCGTTTGGAGTTCGAAAC
TTTCAGGACACTGAGAAAGGGCTTTCGGAAATGAGCCGAGTTCTTCGACC
ACATGGAAGGTGGGCGATACTAGAAGCAGGATTTTCAACAGGCACTGGTT
TTCTTGAAAAAGCTCACCGAATATTCGTTACTAGGATCATGCCGAAGGTG
GCAGGCTTCTTTTCTGGGAATCGTGGTGCTTACGAATACCTGAGCGATTC
AATGCAGAAGTTTCCGGAAGTTGAAGATTTTGTCAAGATGCTAGAGGCAG
CTGGATTGCATGTCGAAGCGCATCAGCGCTTGTCACCTTTTGAAATGGGT
CCGTTTCTCTACAGCGGCAGCAAGTCGCTATAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:299756..300538+

>Ggra10269.t1 ID=Ggra10269.t1|Name=Ggra10269.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=783bp|location=Sequence derived from alignment at tig00000016_pilon:299756..300538+ (Gracilaria gracilis GNS1m male)
ATGCTTCTTCCAAAAATTCTCGCGGCGACAATCGCGGCAGTGACTTGCAT
TGTATTCAGTGAGGAAACTGGTAAAGAGTCATGTGATGTCCCAGGATCGG
GCAAGTTTTTCGACAAGATCGCCGCACGATATGATGTTCTGAACCAAGTA
ATATCGTTAGGATTTCATGGAAGCTGGAAAACCTCAGCGATTCAGAAGAT
CCTTCCGGCAGAACATGTCTTGGACATAAGCACTGGGACTGGGGATTTAG
CAATCTCCCTGGCGGCGAATCGTTCAATTCGAATCGTAGGCCTTGATCCT
TCTTCGGAAATGCTAAATATCGCTCGCGACAAAGTGGCCCGTTTTGCCGA
AAATATCGGTGACGTTCAACTTGTGGAGGGCGTAGCTGAAGAATTGCCGT
TTGAGAGTGAAACTTTTGATGCAGTGACCGTGGCGTTTGGAGTTCGAAAC
TTTCAGGACACTGAGAAAGGGCTTTCGGAAATGAGCCGAGTTCTTCGACC
ACATGGAAGGTGGGCGATACTAGAAGCAGGATTTTCAACAGGCACTGGTT
TTCTTGAAAAAGCTCACCGAATATTCGTTACTAGGATCATGCCGAAGGTG
GCAGGCTTCTTTTCTGGGAATCGTGGTGCTTACGAATACCTGAGCGATTC
AATGCAGAAGTTTCCGGAAGTTGAAGATTTTGTCAAGATGCTAGAGGCAG
CTGGATTGCATGTCGAAGCGCATCAGCGCTTGTCACCTTTTGAAATGGGT
CCGTTTCTCTACAGCGGCAGCAAGTCGCTATAG
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