Ggra10264.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10264.t1
Unique NameGgra10264.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:286127..286660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR425CT
PFAMsSpoU_methylase
Max annot lvl2759|Eukaryota
KEGG koko:K03216
Evalue6.85e-24
EggNOG OGsCOG0219@1|root,2QQ5S@2759|Eukaryota
EC2.1.1.207
DescriptionSpoU rRNA Methylase family
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10264Ggra10264Gracilaria gracilis GNS1m malegenetig00000016_pilon 286127..286660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10264.t1Ggra10264.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 286127..286660 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10264.t1.stop1Ggra10264.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 286127..286129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10264.t1.CDS1Ggra10264.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 286127..286228 -
Ggra10264.t1.CDS2Ggra10264.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 286319..286660 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10264.t1.exon1Ggra10264.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 286127..286228 -
Ggra10264.t1.exon2Ggra10264.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 286319..286660 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10264.t1.intron1Ggra10264.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 286229..286318 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10264.t1.start1Ggra10264.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 286658..286660 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10264.t1 ID=Ggra10264.t1|Name=Ggra10264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp
MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTRLFFTKF
GDQCATEIQWPPEGKIVMIFGSEVDGFDGIREWLDGEGKNERRVAFPMVD
ERFRSFNLSTTASMALWDAYKDVTMRRNIGTGHDTVRVDDSVVVKVR*
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spliced messenger RNA

>Ggra10264.t1 ID=Ggra10264.t1|Name=Ggra10264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000016_pilon:286127..286660- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTTTTCTCTGGACGAAAGACAAATTCGTCGAGCAGGTTTAGATTA
TTGGCAACACGTTGATTTGCGTGTGTATGAAGACTGGTTGCAATTTGCGA
ACGGGAAGATGAAAGAGCTTGGAGGCACACGATTGTTTTTCACCAAGTTT
GGAGATCAATGCGCTACGGAAATCCAGTGGCCGCCAGAGGGAAAGATTGT
GATGATATTCGGAAGTGAAGTGGACGGTTTTGATGGTATTCGGGAGTGGC
TTGATGGCGAGGGAAAGAATGAGAGGCGAGTTGCGTTTCCGATGGTTGAC
GAGCGTTTCCGTAGTTTCAACCTGAGCACCACTGCAAGTATGGCCTTATG
GGATGCTTACAAGGACGTGACGATGCGGCGAAACATAGGAACCGGACACG
ATACCGTTCGTGTGGATGATTCTGTTGTAGTGAAGGTCCGATGA
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protein sequence of Ggra10264.t1

>Ggra10264.t1 ID=Ggra10264.t1|Name=Ggra10264.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MGFSLDERQIRRAGLDYWQHVDLRVYEDWLQFANGKMKELGGTRLFFTKF
GDQCATEIQWPPEGKIVMIFGSEVDGFDGIREWLDGEGKNERRVAFPMVD
ERFRSFNLSTTASMALWDAYKDVTMRRNIGTGHDTVRVDDSVVVKVR*
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mRNA from alignment at tig00000016_pilon:286127..286660-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10264.t1 ID=Ggra10264.t1|Name=Ggra10264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000016_pilon:286127..286660- (Gracilaria gracilis GNS1m male)
ATGGGGTTTTCTCTGGACGAAAGACAAATTCGTCGAGCAGGTTTAGATTA
TTGGCAACACGTTGATTTGCGTGTGTATGAAGACTGGTTGCAATTTGCGA
ACGGGAAGATGAAAGAGCTTGGAGGCACACGATTGTTTTTCACCAAGTTT
GGAGATCAATGCGCTACGGAAATCCAGTGGCCGCCAGAGGGAAAGATTGT
GATGATATTCGGAAGTGAAGTGGACGGTTTTGATGGTATTCGGGAGTGGC
TTGATGGCGAGGGAAAGAATGAGAGGCGAGTTGCGTTTCCGATGGTTGAC
GAGCGTTTCCGTAGTTTCAACCTGAGCACCACTGCAAGTATGGTACGTAG
GATATGTCTTGCTTAAATCTCCGGCTTGTGAAAGTTGTCGATTGTTCCAT
GTTGACTGAAAATCTAACTTGAATTGCTACAGGCCTTATGGGATGCTTAC
AAGGACGTGACGATGCGGCGAAACATAGGAACCGGACACGATACCGTTCG
TGTGGATGATTCTGTTGTAGTGAAGGTCCGATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:286127..286660-

>Ggra10264.t1 ID=Ggra10264.t1|Name=Ggra10264.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00000016_pilon:286127..286660- (Gracilaria gracilis GNS1m male)
ATGGGGTTTTCTCTGGACGAAAGACAAATTCGTCGAGCAGGTTTAGATTA
TTGGCAACACGTTGATTTGCGTGTGTATGAAGACTGGTTGCAATTTGCGA
ACGGGAAGATGAAAGAGCTTGGAGGCACACGATTGTTTTTCACCAAGTTT
GGAGATCAATGCGCTACGGAAATCCAGTGGCCGCCAGAGGGAAAGATTGT
GATGATATTCGGAAGTGAAGTGGACGGTTTTGATGGTATTCGGGAGTGGC
TTGATGGCGAGGGAAAGAATGAGAGGCGAGTTGCGTTTCCGATGGTTGAC
GAGCGTTTCCGTAGTTTCAACCTGAGCACCACTGCAAGTATGGCCTTATG
GGATGCTTACAAGGACGTGACGATGCGGCGAAACATAGGAACCGGACACG
ATACCGTTCGTGTGGATGATTCTGTTGTAGTGAAGGTCCGATGA
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