Ggra10260.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10260.t1
Unique NameGgra10260.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length509
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:240808..242334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ153CT
PFAMsFe-S_biosyn
Max annot lvl2759|Eukaryota
KEGG koko:K22072
Evalue7.04e-72
EggNOG OGsCOG0316@1|root,KOG1119@2759|Eukaryota
Descriptionprotein maturation by iron-sulfur cluster transfer
COG categoryU
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10260Ggra10260Gracilaria gracilis GNS1m malegenetig00000016_pilon 240808..242334 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10260.t1.start1Ggra10260.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 240808..240810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10260.t1.CDS1Ggra10260.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 240808..242334 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10260.t1.exon1Ggra10260.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 240808..242334 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10260.t1.stop1Ggra10260.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 242332..242334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10260.t1Ggra10260.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 240808..242334 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10260.t1 ID=Ggra10260.t1|Name=Ggra10260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=509bp
MLVKAFIHPLPLQVVFTRDRCAASLSTRVVHKRSSPCIGSRFRTDSALRR
SAFIRSAPLSPRRPSRALLGPRATLSESANLEDVSEPVLRAVEASRQLRQ
TVPDIAARSGLSVADVATQAAKLAALTMTPIDVTDAGDLAYRFPSNVRGL
LRAASVRAKLRMAWQTIFPPLYSAVRLAFGALLIISIVVTFVAIAVLGSA
SSSSDDDRRSSRSNFMPVRFFAPDILDIIWYSRATSRYRREKSPDEMSFL
EAVYSFVFGDGDPNADIETRRYRTIAAIIRSNKGAVTAEQLAPYLDPTYA
DGNVVDESFVLPVLQRFNGHPEVTEDGDIIYVFPDFLRSGTSSVEFVGAV
SPLQEQLLSLTRATSVQSAMAVALGAINVLGVLTLGAKLTTAVAITPDAV
AFIALIKSIYPALATYATSFVLVPLFRWLRQKRVNSAIRKRNSARQYAAQ
KLSRPDSTVRRKTRAAEQFAIKGGSQIGNVIYSSDRDLMDQPAVQREIAD
DFDRRLNG*
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spliced messenger RNA

>Ggra10260.t1 ID=Ggra10260.t1|Name=Ggra10260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000016_pilon:240808..242334+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTCAAAGCCTTCATTCACCCATTGCCGCTGCAAGTTGTGTTCAC
CCGCGACAGATGCGCCGCCTCTCTGTCGACGCGCGTCGTTCACAAGCGCT
CTTCGCCCTGCATCGGCTCTCGTTTCCGCACAGACAGTGCTCTTCGTCGC
TCGGCGTTCATTCGAAGCGCGCCGCTCTCCCCCCGCCGTCCTTCTCGTGC
GTTGCTTGGGCCTAGGGCGACGCTTTCTGAATCGGCCAACCTGGAAGATG
TGTCCGAACCGGTGTTACGGGCTGTGGAGGCTTCTCGACAGCTGCGACAG
ACCGTGCCTGACATTGCTGCGCGCTCCGGCCTTTCTGTGGCTGATGTGGC
CACGCAGGCTGCAAAGCTCGCTGCTTTGACGATGACGCCTATTGACGTCA
CTGACGCCGGTGATCTTGCGTATCGCTTTCCGTCCAATGTTCGAGGTTTG
CTTCGTGCTGCTTCGGTGCGTGCCAAGTTGCGCATGGCTTGGCAAACCAT
TTTCCCGCCCTTGTATTCTGCGGTACGGCTTGCGTTTGGTGCTTTGCTCA
TTATTAGCATTGTAGTTACGTTTGTTGCTATTGCTGTTCTTGGAAGTGCT
TCCAGTTCTTCTGATGATGACCGTCGCTCATCTCGGTCCAACTTCATGCC
GGTTCGATTCTTCGCGCCTGATATTCTTGATATCATCTGGTATTCACGCG
CTACAAGTCGTTATCGTCGCGAGAAGTCGCCTGATGAGATGTCCTTTTTG
GAGGCGGTCTACTCGTTTGTGTTTGGTGATGGTGACCCGAACGCCGACAT
CGAAACGCGTAGATATCGTACCATTGCAGCCATCATCCGTTCCAACAAGG
GCGCTGTCACTGCTGAACAGTTGGCGCCGTATCTAGACCCAACTTATGCT
GACGGAAACGTCGTGGACGAAAGTTTTGTGCTTCCAGTGCTTCAGCGTTT
TAATGGGCATCCAGAAGTTACGGAGGATGGCGATATCATATATGTGTTTC
CGGACTTTTTACGAAGCGGAACTTCTAGCGTCGAGTTCGTGGGCGCCGTA
TCTCCGTTGCAAGAGCAGTTGCTATCGCTCACACGCGCCACGTCTGTACA
GAGCGCCATGGCGGTCGCTTTGGGTGCCATCAACGTGTTGGGCGTGCTCA
CACTCGGTGCAAAACTCACAACCGCCGTAGCAATAACGCCAGACGCTGTG
GCGTTCATCGCGCTTATCAAATCGATTTACCCGGCTCTGGCAACTTACGC
TACGTCATTCGTGCTCGTCCCTCTGTTTCGCTGGCTCCGTCAAAAGCGGG
TTAATTCCGCAATTCGAAAGAGGAACAGTGCTCGTCAGTATGCTGCCCAA
AAGTTGTCCCGGCCTGACTCGACCGTTCGGCGAAAGACGCGTGCAGCTGA
GCAGTTTGCTATCAAGGGAGGATCTCAGATTGGTAATGTGATTTACTCGA
GCGATAGAGATCTCATGGATCAACCGGCTGTTCAACGAGAGATTGCTGAT
GATTTTGATAGACGGCTTAACGGATGA
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protein sequence of Ggra10260.t1

>Ggra10260.t1 ID=Ggra10260.t1|Name=Ggra10260.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=509bp
MLVKAFIHPLPLQVVFTRDRCAASLSTRVVHKRSSPCIGSRFRTDSALRR
SAFIRSAPLSPRRPSRALLGPRATLSESANLEDVSEPVLRAVEASRQLRQ
TVPDIAARSGLSVADVATQAAKLAALTMTPIDVTDAGDLAYRFPSNVRGL
LRAASVRAKLRMAWQTIFPPLYSAVRLAFGALLIISIVVTFVAIAVLGSA
SSSSDDDRRSSRSNFMPVRFFAPDILDIIWYSRATSRYRREKSPDEMSFL
EAVYSFVFGDGDPNADIETRRYRTIAAIIRSNKGAVTAEQLAPYLDPTYA
DGNVVDESFVLPVLQRFNGHPEVTEDGDIIYVFPDFLRSGTSSVEFVGAV
SPLQEQLLSLTRATSVQSAMAVALGAINVLGVLTLGAKLTTAVAITPDAV
AFIALIKSIYPALATYATSFVLVPLFRWLRQKRVNSAIRKRNSARQYAAQ
KLSRPDSTVRRKTRAAEQFAIKGGSQIGNVIYSSDRDLMDQPAVQREIAD
DFDRRLNG*
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mRNA from alignment at tig00000016_pilon:240808..242334+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10260.t1 ID=Ggra10260.t1|Name=Ggra10260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000016_pilon:240808..242334+ (Gracilaria gracilis GNS1m male)
ATGCTCGTCAAAGCCTTCATTCACCCATTGCCGCTGCAAGTTGTGTTCAC
CCGCGACAGATGCGCCGCCTCTCTGTCGACGCGCGTCGTTCACAAGCGCT
CTTCGCCCTGCATCGGCTCTCGTTTCCGCACAGACAGTGCTCTTCGTCGC
TCGGCGTTCATTCGAAGCGCGCCGCTCTCCCCCCGCCGTCCTTCTCGTGC
GTTGCTTGGGCCTAGGGCGACGCTTTCTGAATCGGCCAACCTGGAAGATG
TGTCCGAACCGGTGTTACGGGCTGTGGAGGCTTCTCGACAGCTGCGACAG
ACCGTGCCTGACATTGCTGCGCGCTCCGGCCTTTCTGTGGCTGATGTGGC
CACGCAGGCTGCAAAGCTCGCTGCTTTGACGATGACGCCTATTGACGTCA
CTGACGCCGGTGATCTTGCGTATCGCTTTCCGTCCAATGTTCGAGGTTTG
CTTCGTGCTGCTTCGGTGCGTGCCAAGTTGCGCATGGCTTGGCAAACCAT
TTTCCCGCCCTTGTATTCTGCGGTACGGCTTGCGTTTGGTGCTTTGCTCA
TTATTAGCATTGTAGTTACGTTTGTTGCTATTGCTGTTCTTGGAAGTGCT
TCCAGTTCTTCTGATGATGACCGTCGCTCATCTCGGTCCAACTTCATGCC
GGTTCGATTCTTCGCGCCTGATATTCTTGATATCATCTGGTATTCACGCG
CTACAAGTCGTTATCGTCGCGAGAAGTCGCCTGATGAGATGTCCTTTTTG
GAGGCGGTCTACTCGTTTGTGTTTGGTGATGGTGACCCGAACGCCGACAT
CGAAACGCGTAGATATCGTACCATTGCAGCCATCATCCGTTCCAACAAGG
GCGCTGTCACTGCTGAACAGTTGGCGCCGTATCTAGACCCAACTTATGCT
GACGGAAACGTCGTGGACGAAAGTTTTGTGCTTCCAGTGCTTCAGCGTTT
TAATGGGCATCCAGAAGTTACGGAGGATGGCGATATCATATATGTGTTTC
CGGACTTTTTACGAAGCGGAACTTCTAGCGTCGAGTTCGTGGGCGCCGTA
TCTCCGTTGCAAGAGCAGTTGCTATCGCTCACACGCGCCACGTCTGTACA
GAGCGCCATGGCGGTCGCTTTGGGTGCCATCAACGTGTTGGGCGTGCTCA
CACTCGGTGCAAAACTCACAACCGCCGTAGCAATAACGCCAGACGCTGTG
GCGTTCATCGCGCTTATCAAATCGATTTACCCGGCTCTGGCAACTTACGC
TACGTCATTCGTGCTCGTCCCTCTGTTTCGCTGGCTCCGTCAAAAGCGGG
TTAATTCCGCAATTCGAAAGAGGAACAGTGCTCGTCAGTATGCTGCCCAA
AAGTTGTCCCGGCCTGACTCGACCGTTCGGCGAAAGACGCGTGCAGCTGA
GCAGTTTGCTATCAAGGGAGGATCTCAGATTGGTAATGTGATTTACTCGA
GCGATAGAGATCTCATGGATCAACCGGCTGTTCAACGAGAGATTGCTGAT
GATTTTGATAGACGGCTTAACGGATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:240808..242334+

>Ggra10260.t1 ID=Ggra10260.t1|Name=Ggra10260.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00000016_pilon:240808..242334+ (Gracilaria gracilis GNS1m male)
ATGCTCGTCAAAGCCTTCATTCACCCATTGCCGCTGCAAGTTGTGTTCAC
CCGCGACAGATGCGCCGCCTCTCTGTCGACGCGCGTCGTTCACAAGCGCT
CTTCGCCCTGCATCGGCTCTCGTTTCCGCACAGACAGTGCTCTTCGTCGC
TCGGCGTTCATTCGAAGCGCGCCGCTCTCCCCCCGCCGTCCTTCTCGTGC
GTTGCTTGGGCCTAGGGCGACGCTTTCTGAATCGGCCAACCTGGAAGATG
TGTCCGAACCGGTGTTACGGGCTGTGGAGGCTTCTCGACAGCTGCGACAG
ACCGTGCCTGACATTGCTGCGCGCTCCGGCCTTTCTGTGGCTGATGTGGC
CACGCAGGCTGCAAAGCTCGCTGCTTTGACGATGACGCCTATTGACGTCA
CTGACGCCGGTGATCTTGCGTATCGCTTTCCGTCCAATGTTCGAGGTTTG
CTTCGTGCTGCTTCGGTGCGTGCCAAGTTGCGCATGGCTTGGCAAACCAT
TTTCCCGCCCTTGTATTCTGCGGTACGGCTTGCGTTTGGTGCTTTGCTCA
TTATTAGCATTGTAGTTACGTTTGTTGCTATTGCTGTTCTTGGAAGTGCT
TCCAGTTCTTCTGATGATGACCGTCGCTCATCTCGGTCCAACTTCATGCC
GGTTCGATTCTTCGCGCCTGATATTCTTGATATCATCTGGTATTCACGCG
CTACAAGTCGTTATCGTCGCGAGAAGTCGCCTGATGAGATGTCCTTTTTG
GAGGCGGTCTACTCGTTTGTGTTTGGTGATGGTGACCCGAACGCCGACAT
CGAAACGCGTAGATATCGTACCATTGCAGCCATCATCCGTTCCAACAAGG
GCGCTGTCACTGCTGAACAGTTGGCGCCGTATCTAGACCCAACTTATGCT
GACGGAAACGTCGTGGACGAAAGTTTTGTGCTTCCAGTGCTTCAGCGTTT
TAATGGGCATCCAGAAGTTACGGAGGATGGCGATATCATATATGTGTTTC
CGGACTTTTTACGAAGCGGAACTTCTAGCGTCGAGTTCGTGGGCGCCGTA
TCTCCGTTGCAAGAGCAGTTGCTATCGCTCACACGCGCCACGTCTGTACA
GAGCGCCATGGCGGTCGCTTTGGGTGCCATCAACGTGTTGGGCGTGCTCA
CACTCGGTGCAAAACTCACAACCGCCGTAGCAATAACGCCAGACGCTGTG
GCGTTCATCGCGCTTATCAAATCGATTTACCCGGCTCTGGCAACTTACGC
TACGTCATTCGTGCTCGTCCCTCTGTTTCGCTGGCTCCGTCAAAAGCGGG
TTAATTCCGCAATTCGAAAGAGGAACAGTGCTCGTCAGTATGCTGCCCAA
AAGTTGTCCCGGCCTGACTCGACCGTTCGGCGAAAGACGCGTGCAGCTGA
GCAGTTTGCTATCAAGGGAGGATCTCAGATTGGTAATGTGATTTACTCGA
GCGATAGAGATCTCATGGATCAACCGGCTGTTCAACGAGAGATTGCTGAT
GATTTTGATAGACGGCTTAACGGATGA
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