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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 130081.XP_005707525.1 |
Preferred name | CLCN2 |
PFAMs | CBS,Voltage_CLC |
Max annot lvl | 2759|Eukaryota |
KEGG ko | ko:K05010,ko:K05011,ko:K05017,ko:K05018 |
KEGG TC | 2.A.49.2.1,2.A.49.2.11,2.A.49.2.12,2.A.49.2.13,2.A.49.2.4,2.A.49.2.5,2.A.49.2.6,2.A.49.2.7 |
KEGG Pathway | ko04966,ko04978,map04966,map04978 |
GOs | GO:0001101,GO:0001508,GO:0001654,GO:0001655,GO:0001822,GO:0003008,GO:0003012,GO:0003014,GO:0003091,GO:0003097,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005856,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006833,GO:0006936,GO:0006950,GO:0007154,GO:0007275,GO:0007423,GO:0007431,GO:0007588,GO:0007589,GO:0008150,GO:0008308,GO:0008509,GO:0009268,GO:0009414,GO:0009415,GO:0009628,GO:0009925,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015318,GO:0015629,GO:0015698,GO:0016020,GO:0016021,GO:0016323,GO:0016324,GO:0019226,GO:0019227,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030104,GO:0030154,GO:0030321,GO:0030323,GO:0030324,GO:0030425,GO:0031224,GO:0031226,GO:0032501,GO:0032502,GO:0034220,GO:0035272,GO:0035295,GO:0035377,GO:0035637,GO:0036477,GO:0042044,GO:0042045,GO:0042221,GO:0042383,GO:0042391,GO:0042592,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043010,GO:0043025,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044297,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0045177,GO:0045178,GO:0046903,GO:0046983,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050877,GO:0050878,GO:0050891,GO:0050896,GO:0051179,GO:0051234,GO:0051592,GO:0055085,GO:0060041,GO:0060541,GO:0060689,GO:0065007,GO:0065008,GO:0070633,GO:0071944,GO:0072001,GO:0072053,GO:0097447,GO:0097458,GO:0098590,GO:0098656,GO:0098660,GO:0098661,GO:0098870,GO:0120025,GO:0120038,GO:1901700,GO:1902476 |
Evalue | 2.72e-189 |
EggNOG OGs | COG0038@1|root,KOG0476@2759|Eukaryota |
Description | voltage-gated chloride channel activity |
COG category | P |
BRITE | ko00000,ko00001,ko04040 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra10259.t1.stop1 | Ggra10259.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000016_pilon 238024..238026 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
Ggra10259.t1.start1 | Ggra10259.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000016_pilon 240356..240358 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10259.t1 ID=Ggra10259.t1|Name=Ggra10259.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=683bp MLPKPTPPRTVDHVDEVHFAFLDGDPHSTPTLASRHAEPLPPPQQIQHLA GTSAPTTIIHLARLLAFLVLLGIIPSTIIFLVDISVHNVFDLREGIIQLK LQPTLAVFLFCLTGVSLCLASTFVCHVCSTEAEGSGIPAMKSLMSGFYDK VKPALSLWALLAKTIGLVCAIGGGLPVGWEGPNVHISCIIAHHLSRLPPF RALRRDRALRMQIMACACAVGLASSFGTPIGGVLYALETTASFYLVPTFW KCVLATLAGSLVYDMLYKTPLVEAFDNTAFDDISYRGQLPAFMLLGALLG LLGAFFVRCVHFVYLLRKRRLPGTNRYVLLFFVGLAAALVQYPFPNFRHD PRHAINEFFSAKEMVELSRIDVLILVLIKFPLIVISIGLPIPAGVFIPCF LVGAGLGRLYGELLRLLFGHKIIAGGYAVVGAAAFTAGVTRALSVAVVIF EVTGQLKHTMPTLAAVLISVIVANGINRSLYDALIIMKRLPYMPHMRRDR TPDQKVHDIMRTDVVSLHEVCSLVEIRETLDTYPDFDSFPIVTDNGLLLG SVRRRSLLNLITRVSADSPPATDHIPKSPKRDTQSVPDPAKTEAKLSLDE EADLSVMESEEEQAQQQLIPKKEPEYGQNTCTRLCPDLSPLILLRNCPTV LFTHVEILCLAGTEYLMFFLLTKLIELERNCK* back to topspliced messenger RNA >Ggra10259.t1 ID=Ggra10259.t1|Name=Ggra10259.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2049bp|location=Sequence derived from alignment at tig00000016_pilon:238024..240358- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTGCCGAAGCCCACTCCTCCGCGCACGGTAGACCATGTTGATGAGGT ACACTTCGCCTTTCTTGATGGGGATCCGCATTCTACGCCCACCTTAGCTA GTCGTCATGCCGAGCCTTTGCCGCCTCCGCAACAGATCCAGCATCTTGCT GGAACCTCGGCGCCCACTACCATCATTCATCTGGCTAGGTTGCTGGCCTT TTTGGTTTTGCTCGGTATCATTCCTTCCACCATTATCTTTCTGGTTGATA TCTCGGTTCATAATGTGTTCGACTTACGTGAGGGTATCATTCAACTTAAG CTTCAACCTACGCTTGCCGTCTTTCTCTTCTGTCTCACCGGAGTTTCACT GTGTTTAGCCTCCACTTTCGTCTGTCACGTATGTTCTACCGAGGCTGAGG GCTCTGGTATTCCAGCCATGAAGTCTCTCATGTCCGGCTTTTACGACAAG GTCAAGCCAGCCCTATCGCTATGGGCTCTTCTCGCCAAGACCATCGGGCT CGTCTGTGCTATCGGCGGCGGTCTCCCCGTCGGCTGGGAGGGACCAAATG TGCACATTTCATGTATCATCGCCCATCATCTTTCGCGACTGCCCCCGTTT CGAGCGCTACGCAGGGATCGTGCCCTGCGTATGCAAATCATGGCGTGTGC CTGTGCAGTCGGTCTGGCGTCCAGCTTCGGCACCCCTATTGGCGGCGTGC TCTATGCTCTAGAGACTACTGCATCTTTTTATCTTGTGCCTACTTTCTGG AAATGCGTGCTTGCCACACTTGCGGGCTCTCTTGTATACGATATGCTTTA CAAGACACCGCTGGTTGAGGCTTTTGACAATACCGCCTTTGATGACATTT CGTACAGAGGTCAGCTCCCAGCTTTCATGTTGCTTGGCGCTCTCTTGGGA TTGCTGGGTGCGTTTTTCGTCCGATGTGTTCATTTCGTTTACCTGCTTCG AAAGCGACGACTTCCCGGTACCAACCGCTATGTGTTATTGTTTTTCGTTG GGCTTGCGGCTGCGCTTGTTCAGTATCCGTTTCCAAACTTCCGCCACGAT CCTCGCCATGCCATAAACGAATTCTTTTCCGCAAAAGAAATGGTCGAGCT TTCTCGTATCGATGTGCTCATACTTGTCCTTATCAAGTTCCCTCTTATTG TCATCTCAATTGGGCTCCCTATCCCTGCTGGTGTGTTCATCCCATGCTTT TTGGTTGGAGCCGGCTTGGGACGTTTGTACGGTGAGCTTCTTCGTCTTCT CTTCGGACATAAGATTATCGCAGGGGGATATGCTGTTGTTGGAGCTGCTG CCTTTACAGCTGGAGTCACTCGTGCACTCTCTGTTGCTGTGGTCATATTT GAGGTTACAGGCCAGCTGAAGCACACAATGCCTACTCTCGCAGCTGTGCT CATTTCTGTCATTGTGGCAAATGGTATTAACCGCTCTTTGTACGACGCTC TGATTATCATGAAGCGCTTGCCGTACATGCCGCATATGAGAAGGGATAGA ACACCAGATCAGAAAGTTCACGATATAATGCGAACCGACGTTGTATCGCT TCATGAGGTATGCTCACTTGTGGAAATAAGGGAAACGCTGGACACATATC CGGACTTTGACTCGTTTCCGATTGTCACAGATAATGGACTTCTACTTGGC AGCGTTCGACGCAGAAGTCTTCTGAATTTGATTACGCGCGTCAGTGCTGA CAGCCCGCCAGCAACGGACCACATTCCGAAGTCTCCAAAACGAGATACAC AAAGCGTGCCAGACCCTGCCAAAACCGAAGCCAAACTGTCCTTAGATGAG GAGGCCGATTTATCTGTGATGGAAAGTGAAGAAGAACAGGCCCAACAACA GCTGATACCAAAGAAGGAACCAGAGTACGGCCAAAACACCTGTACAAGAC TGTGCCCTGACCTCAGCCCACTGATTCTCCTGCGTAACTGTCCAACTGTA CTATTTACTCATGTGGAGATCTTGTGCCTTGCCGGTACAGAGTATTTAAT GTTTTTTTTGTTGACTAAGCTGATTGAACTTGAGAGAAATTGCAAGTAA back to topprotein sequence of Ggra10259.t1 >Ggra10259.t1 ID=Ggra10259.t1|Name=Ggra10259.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=683bp
MLPKPTPPRTVDHVDEVHFAFLDGDPHSTPTLASRHAEPLPPPQQIQHLA GTSAPTTIIHLARLLAFLVLLGIIPSTIIFLVDISVHNVFDLREGIIQLK LQPTLAVFLFCLTGVSLCLASTFVCHVCSTEAEGSGIPAMKSLMSGFYDK VKPALSLWALLAKTIGLVCAIGGGLPVGWEGPNVHISCIIAHHLSRLPPF RALRRDRALRMQIMACACAVGLASSFGTPIGGVLYALETTASFYLVPTFW KCVLATLAGSLVYDMLYKTPLVEAFDNTAFDDISYRGQLPAFMLLGALLG LLGAFFVRCVHFVYLLRKRRLPGTNRYVLLFFVGLAAALVQYPFPNFRHD PRHAINEFFSAKEMVELSRIDVLILVLIKFPLIVISIGLPIPAGVFIPCF LVGAGLGRLYGELLRLLFGHKIIAGGYAVVGAAAFTAGVTRALSVAVVIF EVTGQLKHTMPTLAAVLISVIVANGINRSLYDALIIMKRLPYMPHMRRDR TPDQKVHDIMRTDVVSLHEVCSLVEIRETLDTYPDFDSFPIVTDNGLLLG SVRRRSLLNLITRVSADSPPATDHIPKSPKRDTQSVPDPAKTEAKLSLDE EADLSVMESEEEQAQQQLIPKKEPEYGQNTCTRLCPDLSPLILLRNCPTV LFTHVEILCLAGTEYLMFFLLTKLIELERNCK* back to topmRNA from alignment at tig00000016_pilon:238024..240358- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10259.t1 ID=Ggra10259.t1|Name=Ggra10259.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2335bp|location=Sequence derived from alignment at tig00000016_pilon:238024..240358- (Gracilaria gracilis GNS1m male) ATGTTGCCGAAGCCCACTCCTCCGCGCACGGTAGACCATGTTGATGAGGT
ACACTTCGCCTTTCTTGATGGGGATCCGCATTCTACGCCCACCTTAGCTA
GTCGTCATGCCGAGCCTTTGCCGCCTCCGCAACAGATCCAGCATCTTGCT
GGAACCTCGGCGCCCACTACCATCATTCATCTGGCTAGGTTGCTGGCCTT
TTTGGTTTTGCTCGGTATCATTCCTTCCACCATTATCTTTCTGGTTGATA
TCTCGGTTCATAATGTGTTCGACTTACGTGAGGGTATCATTCAACTTAAG
CTTCAACCTACGCTTGCCGTCTTTCTCTTCTGTCTCACCGGAGTTTCACT
GTGTTTAGCCTCCACTTTCGTCTGTCACGTATGTTCTACCGAGGCTGAGG
GCTCTGGTATTCCAGCCATGAAGTCTCTCATGTCCGGCTTTTACGACAAG
GTCAAGCCAGCCCTATCGCTATGGGCTCTTCTCGCCAAGACCATCGGGCT
CGTCTGTGCTATCGGCGGCGGTCTCCCCGTCGGCTGGGAGGGACCAAATG
TGCACATTTCATGTATCATCGCCCATCATCTTTCGCGACTGCCCCCGTTT
CGAGCGCTACGCAGGGATCGTGCCCTGCGTATGCAAATCATGGCGTGTGC
CTGTGCAGTCGGTCTGGCGTCCAGCTTCGGCACCCCTATTGGCGGCGTGC
TCTATGCTCTAGAGACTACTGCATCTTTTTATCTTGTGCCTACTTTCTGG
AAATGCGTGCTTGCCACACTTGCGGGCTCTCTTGTATACGATATGCTTTA
CAAGACACCGCTGGTTGAGGCTTTTGACAATACCGCCTTTGATGACATTT
CGTACAGAGGTCAGCTCCCAGCTTTCATGTTGCTTGGCGCTCTCTTGGGA
TTGCTGGGTGCGTTTTTCGTCCGATGTGTTCATTTCGTTTACCTGCTTCG
AAAGCGACGACTTCCCGGTACCAACCGCTATGTGTTATTGTTTTTCGTTG
GGCTTGCGGCTGCGCTTGTTCAGTATCCGTTTCCAAACTTCCGCCACGAT
CCTCGCCATGCCATAAACGAATTCTTTTCCGCAAAAGAAATGGTCGAGCT
TTCTCGTATCGATGTGCTCATACTTGTCCTTATCAAGTTCCCTCTTATTG
TCATCTCAATTGGGCTCCCTATCCCTGCTGGTGTGTTCATCCCATGCTTT
TTGGTTGGAGCCGGCTTGGGACGTTTGTACGGTGAGCTTCTTCGTCTTCT
CTTCGGACATAAGATTATCGCAGGGGGATATGCTGTTGTTGGAGCTGCTG
CCTTTACAGCTGGAGTCACTCGTGCACTCTCTGTTGCTGTGGTCATATTT
GAGGTTACAGGCCAGCTGAAGCACACAATGCCTACTCTCGCAGCTGTGCT
CATTTCTGTCATTGTGGCAAATGGTATTAACCGCTCTTTGTACGACGCTC
TGATTATCATGAAGCGCTTGCCGTACATGCCGCATATGAGAAGGGATAGA
ACACCAGATCAGAAAGTTCACGATATAATGCGAACCGACGTTGTATCGCT
TCATGAGGTATGCTCACTTGTGGAAATAAGGGAAACGCTGGACACATATC
CGGACTTTGACTCGTTTCCGATTGTCACAGATAATGGACTTCTACTTGGC
AGCGTTCGACGCAGAAGTCTTCTGAATTTGATTACGCGCGTCAGTGCTGA
CAGCCCGCCAGCAACGGACCACATTCCGAAGTCTCCAAAACGAGATACAC
AAAGCGTGCCAGACCCTGCCAAAACCGAAGCCAAACTGTCCTTAGATGAG
GAGGCCGATTTATCTGTGATGGAAAGTGAAGAAGAACAGGCCCAACAACA
GCTGATACCAAAGAAGGAACCAGAGTACGGCCAAAACACCTGTACAAGAC
TGTGCCCTGACCTCAGCCCACTGATTGTAACTGCCAATACTTCGCTGAGC
CAGCTCCATTTCATGTTCGTTATGTTAATGCCCACACACGCATATGTTTT
GATAGGCGGCGCGCTACATGGTATTGTAACGCGTGGTGATTTAGTCCAAA
GCGGTGAACGTCTCAGCATACCATCACGGCATGTTCTTTCTGAACTAGCT
CCTGCGTAACTGTCCAACTGTACTAGTAAGTAATCTATCAAAACTCTATG
TTCGCAATCTATTTAACAGCCTCGAATCTCGAAACCCTACTCTAGGATCC
GGAGAAGAAGAACCGGAGTATCTAATGAACTAAGTTAAGTTTACTCATGT
GGAGATCTTGTGCCTTGCCGGTACAGAGTATTTAATGTTTTTTTTGTTGA
CTAAGCTGATTGAACTTGAGAGAAATTGCAAGTAA back to topCoding sequence (CDS) from alignment at tig00000016_pilon:238024..240358- >Ggra10259.t1 ID=Ggra10259.t1|Name=Ggra10259.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2049bp|location=Sequence derived from alignment at tig00000016_pilon:238024..240358- (Gracilaria gracilis GNS1m male) ATGTTGCCGAAGCCCACTCCTCCGCGCACGGTAGACCATGTTGATGAGGT ACACTTCGCCTTTCTTGATGGGGATCCGCATTCTACGCCCACCTTAGCTA GTCGTCATGCCGAGCCTTTGCCGCCTCCGCAACAGATCCAGCATCTTGCT GGAACCTCGGCGCCCACTACCATCATTCATCTGGCTAGGTTGCTGGCCTT TTTGGTTTTGCTCGGTATCATTCCTTCCACCATTATCTTTCTGGTTGATA TCTCGGTTCATAATGTGTTCGACTTACGTGAGGGTATCATTCAACTTAAG CTTCAACCTACGCTTGCCGTCTTTCTCTTCTGTCTCACCGGAGTTTCACT GTGTTTAGCCTCCACTTTCGTCTGTCACGTATGTTCTACCGAGGCTGAGG GCTCTGGTATTCCAGCCATGAAGTCTCTCATGTCCGGCTTTTACGACAAG GTCAAGCCAGCCCTATCGCTATGGGCTCTTCTCGCCAAGACCATCGGGCT CGTCTGTGCTATCGGCGGCGGTCTCCCCGTCGGCTGGGAGGGACCAAATG TGCACATTTCATGTATCATCGCCCATCATCTTTCGCGACTGCCCCCGTTT CGAGCGCTACGCAGGGATCGTGCCCTGCGTATGCAAATCATGGCGTGTGC CTGTGCAGTCGGTCTGGCGTCCAGCTTCGGCACCCCTATTGGCGGCGTGC TCTATGCTCTAGAGACTACTGCATCTTTTTATCTTGTGCCTACTTTCTGG AAATGCGTGCTTGCCACACTTGCGGGCTCTCTTGTATACGATATGCTTTA CAAGACACCGCTGGTTGAGGCTTTTGACAATACCGCCTTTGATGACATTT CGTACAGAGGTCAGCTCCCAGCTTTCATGTTGCTTGGCGCTCTCTTGGGA TTGCTGGGTGCGTTTTTCGTCCGATGTGTTCATTTCGTTTACCTGCTTCG AAAGCGACGACTTCCCGGTACCAACCGCTATGTGTTATTGTTTTTCGTTG GGCTTGCGGCTGCGCTTGTTCAGTATCCGTTTCCAAACTTCCGCCACGAT CCTCGCCATGCCATAAACGAATTCTTTTCCGCAAAAGAAATGGTCGAGCT TTCTCGTATCGATGTGCTCATACTTGTCCTTATCAAGTTCCCTCTTATTG TCATCTCAATTGGGCTCCCTATCCCTGCTGGTGTGTTCATCCCATGCTTT TTGGTTGGAGCCGGCTTGGGACGTTTGTACGGTGAGCTTCTTCGTCTTCT CTTCGGACATAAGATTATCGCAGGGGGATATGCTGTTGTTGGAGCTGCTG CCTTTACAGCTGGAGTCACTCGTGCACTCTCTGTTGCTGTGGTCATATTT GAGGTTACAGGCCAGCTGAAGCACACAATGCCTACTCTCGCAGCTGTGCT CATTTCTGTCATTGTGGCAAATGGTATTAACCGCTCTTTGTACGACGCTC TGATTATCATGAAGCGCTTGCCGTACATGCCGCATATGAGAAGGGATAGA ACACCAGATCAGAAAGTTCACGATATAATGCGAACCGACGTTGTATCGCT TCATGAGGTATGCTCACTTGTGGAAATAAGGGAAACGCTGGACACATATC CGGACTTTGACTCGTTTCCGATTGTCACAGATAATGGACTTCTACTTGGC AGCGTTCGACGCAGAAGTCTTCTGAATTTGATTACGCGCGTCAGTGCTGA CAGCCCGCCAGCAACGGACCACATTCCGAAGTCTCCAAAACGAGATACAC AAAGCGTGCCAGACCCTGCCAAAACCGAAGCCAAACTGTCCTTAGATGAG GAGGCCGATTTATCTGTGATGGAAAGTGAAGAAGAACAGGCCCAACAACA GCTGATACCAAAGAAGGAACCAGAGTACGGCCAAAACACCTGTACAAGAC TGTGCCCTGACCTCAGCCCACTGATTCTCCTGCGTAACTGTCCAACTGTA CTATTTACTCATGTGGAGATCTTGTGCCTTGCCGGTACAGAGTATTTAAT GTTTTTTTTGTTGACTAAGCTGATTGAACTTGAGAGAAATTGCAAGTAA back to top
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