Ggra10256.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10256.t1
Unique NameGgra10256.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:227807..228400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog395961.Cyan7425_1432
Preferred namenblB
PFAMsHEAT_2,HEAT_PBS
Max annot lvl1117|Cyanobacteria
Evalue1.03e-27
EggNOG OGsCOG1413@1|root,COG1413@2|Bacteria,1G341@1117|Cyanobacteria,3KGXR@43988|Cyanothece
DescriptionPFAM PBS lyase HEAT domain protein repeat-containing protein
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10256Ggra10256Gracilaria gracilis GNS1m malegenetig00000016_pilon 227807..228400 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10256.t1.start1Ggra10256.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 227807..227809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10256.t1.CDS1Ggra10256.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 227807..228400 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10256.t1.exon1Ggra10256.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 227807..228400 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10256.t1.stop1Ggra10256.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 228398..228400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10256.t1Ggra10256.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 227807..228400 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10256.t1 ID=Ggra10256.t1|Name=Ggra10256.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=198bp
MLVSSDALDRIRGINRTAELDSISEIVSALVSIATQDQNQQVRYVAISRL
SALEPTSLSEEEKEELLTAARFILVNDTESSCQAGAADMIAGLRLSDGFD
DLVATFNSTSDWMLKFSIAAGLGEMGDPKAFDFLVSVLDKEPGDNFLLVS
AVIGSLGELGDERGIPIIERYLNNEDNSIKERAVIAHDMLVKDKDSG*
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spliced messenger RNA

>Ggra10256.t1 ID=Ggra10256.t1|Name=Ggra10256.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000016_pilon:227807..228400+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGTATCGAGCGATGCGTTGGATCGCATCCGCGGAATAAACCGAAC
TGCTGAATTGGATTCAATCTCTGAGATAGTCTCAGCACTTGTTTCAATCG
CAACCCAAGACCAGAATCAGCAAGTAAGATACGTGGCGATATCGCGTCTC
TCCGCGTTAGAACCTACATCACTCTCCGAAGAAGAGAAGGAAGAATTATT
AACGGCTGCAAGGTTCATCTTGGTGAACGATACTGAATCAAGTTGTCAGG
CTGGCGCAGCAGATATGATTGCTGGGTTGCGATTGTCAGATGGATTCGAT
GACTTGGTTGCGACGTTTAATTCTACTTCAGACTGGATGCTGAAATTTAG
CATCGCTGCTGGACTGGGTGAGATGGGAGACCCGAAAGCTTTTGACTTCC
TGGTATCGGTGCTGGATAAGGAACCTGGTGATAATTTCTTGTTGGTTTCG
GCGGTTATTGGTTCGCTGGGTGAGCTTGGAGATGAGAGGGGTATCCCAAT
TATTGAAAGGTACTTGAACAACGAGGACAACTCCATCAAAGAGCGGGCAG
TAATCGCGCACGATATGCTTGTGAAAGACAAGGATTCTGGATGA
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protein sequence of Ggra10256.t1

>Ggra10256.t1 ID=Ggra10256.t1|Name=Ggra10256.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MLVSSDALDRIRGINRTAELDSISEIVSALVSIATQDQNQQVRYVAISRL
SALEPTSLSEEEKEELLTAARFILVNDTESSCQAGAADMIAGLRLSDGFD
DLVATFNSTSDWMLKFSIAAGLGEMGDPKAFDFLVSVLDKEPGDNFLLVS
AVIGSLGELGDERGIPIIERYLNNEDNSIKERAVIAHDMLVKDKDSG*
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mRNA from alignment at tig00000016_pilon:227807..228400+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10256.t1 ID=Ggra10256.t1|Name=Ggra10256.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000016_pilon:227807..228400+ (Gracilaria gracilis GNS1m male)
ATGTTAGTATCGAGCGATGCGTTGGATCGCATCCGCGGAATAAACCGAAC
TGCTGAATTGGATTCAATCTCTGAGATAGTCTCAGCACTTGTTTCAATCG
CAACCCAAGACCAGAATCAGCAAGTAAGATACGTGGCGATATCGCGTCTC
TCCGCGTTAGAACCTACATCACTCTCCGAAGAAGAGAAGGAAGAATTATT
AACGGCTGCAAGGTTCATCTTGGTGAACGATACTGAATCAAGTTGTCAGG
CTGGCGCAGCAGATATGATTGCTGGGTTGCGATTGTCAGATGGATTCGAT
GACTTGGTTGCGACGTTTAATTCTACTTCAGACTGGATGCTGAAATTTAG
CATCGCTGCTGGACTGGGTGAGATGGGAGACCCGAAAGCTTTTGACTTCC
TGGTATCGGTGCTGGATAAGGAACCTGGTGATAATTTCTTGTTGGTTTCG
GCGGTTATTGGTTCGCTGGGTGAGCTTGGAGATGAGAGGGGTATCCCAAT
TATTGAAAGGTACTTGAACAACGAGGACAACTCCATCAAAGAGCGGGCAG
TAATCGCGCACGATATGCTTGTGAAAGACAAGGATTCTGGATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:227807..228400+

>Ggra10256.t1 ID=Ggra10256.t1|Name=Ggra10256.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00000016_pilon:227807..228400+ (Gracilaria gracilis GNS1m male)
ATGTTAGTATCGAGCGATGCGTTGGATCGCATCCGCGGAATAAACCGAAC
TGCTGAATTGGATTCAATCTCTGAGATAGTCTCAGCACTTGTTTCAATCG
CAACCCAAGACCAGAATCAGCAAGTAAGATACGTGGCGATATCGCGTCTC
TCCGCGTTAGAACCTACATCACTCTCCGAAGAAGAGAAGGAAGAATTATT
AACGGCTGCAAGGTTCATCTTGGTGAACGATACTGAATCAAGTTGTCAGG
CTGGCGCAGCAGATATGATTGCTGGGTTGCGATTGTCAGATGGATTCGAT
GACTTGGTTGCGACGTTTAATTCTACTTCAGACTGGATGCTGAAATTTAG
CATCGCTGCTGGACTGGGTGAGATGGGAGACCCGAAAGCTTTTGACTTCC
TGGTATCGGTGCTGGATAAGGAACCTGGTGATAATTTCTTGTTGGTTTCG
GCGGTTATTGGTTCGCTGGGTGAGCTTGGAGATGAGAGGGGTATCCCAAT
TATTGAAAGGTACTTGAACAACGAGGACAACTCCATCAAAGAGCGGGCAG
TAATCGCGCACGATATGCTTGTGAAAGACAAGGATTCTGGATGA
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