Ggra10251.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10251.t1
Unique NameGgra10251.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length519
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:212440..213996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10251Ggra10251Gracilaria gracilis GNS1m malegenetig00000016_pilon 212440..213996 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10251.t1.stop1Ggra10251.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 212440..212442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10251.t1.CDS1Ggra10251.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 212440..213996 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10251.t1.exon1Ggra10251.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 212440..213996 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10251.t1.start1Ggra10251.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 213994..213996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10251.t1Ggra10251.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 212440..213996 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10251.t1 ID=Ggra10251.t1|Name=Ggra10251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp
MPDVSTAFTASVPTSPPIPSSPPSAVAPPRSDTDNLKSSDTDAPEILKAV
NSDTLRDHDPSPVAAQPPPAAHQSTPDQSTPDQSTPDQCNSAIAPSVVPA
MPQSVSASMDTPSDVPIAPVNLRPRSKNRPGRPPNINENSLMRRLECIMA
VDTGRMAMSEACQHYDISARTFYRWLRNKHRLIELTGFTEEDFRNGPPPA
ERVALSDQIHRMPPATVSDLHSNLPHLPQQPAIAAQSPPNSVSRHPVVFA
QPMALKRRMPRIPHYSYGYNDRGLMQSQIYHRNTTKMPTQTPAAAEEPQR
TCNGRPVARRKSGSTLSPGNDIDVRESNPLYHLPDTDEGPMTPNLETCKR
RKISRSDSVILDDAVDDVLEVHPNQSFVGKCANQGSANGNGNIPNEQSQP
QSSPEDSQTKAANYPDAMGTVNNGVPDSHSRALDLSASQSPMQFVECNQK
HKIEIVSGQKRVNIAWYHGATSADIKEAIARRFSLVPGTPWSLVDTFSDE
IIVSDGMPSGRYHLTVFP*
back to top

spliced messenger RNA

>Ggra10251.t1 ID=Ggra10251.t1|Name=Ggra10251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000016_pilon:212440..213996- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGATGTGTCTACCGCATTCACAGCGTCGGTTCCGACCTCGCCGCC
CATACCGTCCTCGCCTCCCAGTGCGGTTGCGCCCCCAAGGTCCGACACCG
ATAACCTCAAGTCCTCCGACACCGACGCTCCCGAAATTCTCAAAGCCGTT
AACTCGGACACGCTCAGGGATCATGACCCGTCACCCGTCGCTGCACAGCC
ACCTCCCGCCGCGCATCAATCCACGCCCGATCAATCCACGCCCGATCAAT
CCACGCCCGATCAATGCAATTCCGCCATAGCCCCATCCGTCGTGCCGGCG
ATGCCTCAATCTGTATCTGCGTCCATGGATACACCGTCAGATGTCCCCAT
AGCACCTGTTAACCTGCGTCCGCGCTCTAAGAACCGACCAGGACGCCCTC
CGAACATCAACGAGAACTCGCTCATGCGCCGATTGGAGTGCATCATGGCT
GTGGATACCGGCCGCATGGCCATGTCGGAGGCCTGTCAGCATTATGATAT
CTCTGCGCGTACGTTCTATCGCTGGCTGAGAAACAAGCACCGATTAATAG
AACTAACTGGTTTCACAGAAGAAGACTTTAGAAACGGACCGCCACCCGCG
GAGAGGGTAGCTCTTTCTGATCAGATACATAGAATGCCCCCAGCTACTGT
TTCCGATTTGCATTCTAACCTACCTCATCTGCCACAGCAGCCGGCAATCG
CCGCTCAATCGCCCCCAAACTCGGTATCACGTCATCCCGTTGTATTTGCC
CAACCTATGGCCTTGAAGCGTCGTATGCCAAGAATTCCGCATTATTCCTA
TGGTTATAACGATAGAGGGCTTATGCAGAGTCAAATATATCATCGAAATA
CCACCAAAATGCCTACTCAGACCCCCGCAGCCGCCGAAGAACCACAAAGG
ACATGTAATGGACGACCTGTCGCGCGCAGAAAGTCAGGATCAACGCTTTC
CCCAGGCAACGATATCGATGTGCGAGAATCAAATCCGTTGTATCATCTTC
CAGATACAGATGAAGGGCCGATGACACCCAACTTAGAAACCTGCAAGCGG
CGAAAGATTTCTCGCAGTGATTCTGTCATACTTGATGACGCCGTTGATGA
TGTTCTTGAGGTGCATCCGAACCAGTCTTTCGTTGGAAAATGTGCGAACC
AAGGGTCAGCCAACGGCAATGGCAACATTCCTAATGAACAATCTCAGCCT
CAATCTTCACCAGAAGATTCCCAAACTAAAGCGGCGAATTACCCTGATGC
AATGGGCACCGTCAACAACGGGGTGCCAGACAGCCATTCCCGTGCTTTGG
ATCTCTCGGCTAGTCAGAGCCCTATGCAGTTCGTTGAATGTAACCAGAAG
CATAAGATCGAGATTGTGTCGGGACAGAAACGAGTTAATATTGCTTGGTA
TCATGGAGCTACATCTGCGGACATCAAAGAAGCCATAGCGCGACGGTTTT
CGCTTGTGCCGGGTACCCCATGGTCACTTGTGGACACGTTCTCCGATGAG
ATTATCGTGTCCGACGGAATGCCAAGTGGCCGATACCATCTAACAGTGTT
CCCATAG
back to top

protein sequence of Ggra10251.t1

>Ggra10251.t1 ID=Ggra10251.t1|Name=Ggra10251.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=519bp
MPDVSTAFTASVPTSPPIPSSPPSAVAPPRSDTDNLKSSDTDAPEILKAV
NSDTLRDHDPSPVAAQPPPAAHQSTPDQSTPDQSTPDQCNSAIAPSVVPA
MPQSVSASMDTPSDVPIAPVNLRPRSKNRPGRPPNINENSLMRRLECIMA
VDTGRMAMSEACQHYDISARTFYRWLRNKHRLIELTGFTEEDFRNGPPPA
ERVALSDQIHRMPPATVSDLHSNLPHLPQQPAIAAQSPPNSVSRHPVVFA
QPMALKRRMPRIPHYSYGYNDRGLMQSQIYHRNTTKMPTQTPAAAEEPQR
TCNGRPVARRKSGSTLSPGNDIDVRESNPLYHLPDTDEGPMTPNLETCKR
RKISRSDSVILDDAVDDVLEVHPNQSFVGKCANQGSANGNGNIPNEQSQP
QSSPEDSQTKAANYPDAMGTVNNGVPDSHSRALDLSASQSPMQFVECNQK
HKIEIVSGQKRVNIAWYHGATSADIKEAIARRFSLVPGTPWSLVDTFSDE
IIVSDGMPSGRYHLTVFP*
back to top

mRNA from alignment at tig00000016_pilon:212440..213996-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10251.t1 ID=Ggra10251.t1|Name=Ggra10251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000016_pilon:212440..213996- (Gracilaria gracilis GNS1m male)
ATGCCCGATGTGTCTACCGCATTCACAGCGTCGGTTCCGACCTCGCCGCC
CATACCGTCCTCGCCTCCCAGTGCGGTTGCGCCCCCAAGGTCCGACACCG
ATAACCTCAAGTCCTCCGACACCGACGCTCCCGAAATTCTCAAAGCCGTT
AACTCGGACACGCTCAGGGATCATGACCCGTCACCCGTCGCTGCACAGCC
ACCTCCCGCCGCGCATCAATCCACGCCCGATCAATCCACGCCCGATCAAT
CCACGCCCGATCAATGCAATTCCGCCATAGCCCCATCCGTCGTGCCGGCG
ATGCCTCAATCTGTATCTGCGTCCATGGATACACCGTCAGATGTCCCCAT
AGCACCTGTTAACCTGCGTCCGCGCTCTAAGAACCGACCAGGACGCCCTC
CGAACATCAACGAGAACTCGCTCATGCGCCGATTGGAGTGCATCATGGCT
GTGGATACCGGCCGCATGGCCATGTCGGAGGCCTGTCAGCATTATGATAT
CTCTGCGCGTACGTTCTATCGCTGGCTGAGAAACAAGCACCGATTAATAG
AACTAACTGGTTTCACAGAAGAAGACTTTAGAAACGGACCGCCACCCGCG
GAGAGGGTAGCTCTTTCTGATCAGATACATAGAATGCCCCCAGCTACTGT
TTCCGATTTGCATTCTAACCTACCTCATCTGCCACAGCAGCCGGCAATCG
CCGCTCAATCGCCCCCAAACTCGGTATCACGTCATCCCGTTGTATTTGCC
CAACCTATGGCCTTGAAGCGTCGTATGCCAAGAATTCCGCATTATTCCTA
TGGTTATAACGATAGAGGGCTTATGCAGAGTCAAATATATCATCGAAATA
CCACCAAAATGCCTACTCAGACCCCCGCAGCCGCCGAAGAACCACAAAGG
ACATGTAATGGACGACCTGTCGCGCGCAGAAAGTCAGGATCAACGCTTTC
CCCAGGCAACGATATCGATGTGCGAGAATCAAATCCGTTGTATCATCTTC
CAGATACAGATGAAGGGCCGATGACACCCAACTTAGAAACCTGCAAGCGG
CGAAAGATTTCTCGCAGTGATTCTGTCATACTTGATGACGCCGTTGATGA
TGTTCTTGAGGTGCATCCGAACCAGTCTTTCGTTGGAAAATGTGCGAACC
AAGGGTCAGCCAACGGCAATGGCAACATTCCTAATGAACAATCTCAGCCT
CAATCTTCACCAGAAGATTCCCAAACTAAAGCGGCGAATTACCCTGATGC
AATGGGCACCGTCAACAACGGGGTGCCAGACAGCCATTCCCGTGCTTTGG
ATCTCTCGGCTAGTCAGAGCCCTATGCAGTTCGTTGAATGTAACCAGAAG
CATAAGATCGAGATTGTGTCGGGACAGAAACGAGTTAATATTGCTTGGTA
TCATGGAGCTACATCTGCGGACATCAAAGAAGCCATAGCGCGACGGTTTT
CGCTTGTGCCGGGTACCCCATGGTCACTTGTGGACACGTTCTCCGATGAG
ATTATCGTGTCCGACGGAATGCCAAGTGGCCGATACCATCTAACAGTGTT
CCCATAG
back to top

Coding sequence (CDS) from alignment at tig00000016_pilon:212440..213996-

>Ggra10251.t1 ID=Ggra10251.t1|Name=Ggra10251.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1557bp|location=Sequence derived from alignment at tig00000016_pilon:212440..213996- (Gracilaria gracilis GNS1m male)
ATGCCCGATGTGTCTACCGCATTCACAGCGTCGGTTCCGACCTCGCCGCC
CATACCGTCCTCGCCTCCCAGTGCGGTTGCGCCCCCAAGGTCCGACACCG
ATAACCTCAAGTCCTCCGACACCGACGCTCCCGAAATTCTCAAAGCCGTT
AACTCGGACACGCTCAGGGATCATGACCCGTCACCCGTCGCTGCACAGCC
ACCTCCCGCCGCGCATCAATCCACGCCCGATCAATCCACGCCCGATCAAT
CCACGCCCGATCAATGCAATTCCGCCATAGCCCCATCCGTCGTGCCGGCG
ATGCCTCAATCTGTATCTGCGTCCATGGATACACCGTCAGATGTCCCCAT
AGCACCTGTTAACCTGCGTCCGCGCTCTAAGAACCGACCAGGACGCCCTC
CGAACATCAACGAGAACTCGCTCATGCGCCGATTGGAGTGCATCATGGCT
GTGGATACCGGCCGCATGGCCATGTCGGAGGCCTGTCAGCATTATGATAT
CTCTGCGCGTACGTTCTATCGCTGGCTGAGAAACAAGCACCGATTAATAG
AACTAACTGGTTTCACAGAAGAAGACTTTAGAAACGGACCGCCACCCGCG
GAGAGGGTAGCTCTTTCTGATCAGATACATAGAATGCCCCCAGCTACTGT
TTCCGATTTGCATTCTAACCTACCTCATCTGCCACAGCAGCCGGCAATCG
CCGCTCAATCGCCCCCAAACTCGGTATCACGTCATCCCGTTGTATTTGCC
CAACCTATGGCCTTGAAGCGTCGTATGCCAAGAATTCCGCATTATTCCTA
TGGTTATAACGATAGAGGGCTTATGCAGAGTCAAATATATCATCGAAATA
CCACCAAAATGCCTACTCAGACCCCCGCAGCCGCCGAAGAACCACAAAGG
ACATGTAATGGACGACCTGTCGCGCGCAGAAAGTCAGGATCAACGCTTTC
CCCAGGCAACGATATCGATGTGCGAGAATCAAATCCGTTGTATCATCTTC
CAGATACAGATGAAGGGCCGATGACACCCAACTTAGAAACCTGCAAGCGG
CGAAAGATTTCTCGCAGTGATTCTGTCATACTTGATGACGCCGTTGATGA
TGTTCTTGAGGTGCATCCGAACCAGTCTTTCGTTGGAAAATGTGCGAACC
AAGGGTCAGCCAACGGCAATGGCAACATTCCTAATGAACAATCTCAGCCT
CAATCTTCACCAGAAGATTCCCAAACTAAAGCGGCGAATTACCCTGATGC
AATGGGCACCGTCAACAACGGGGTGCCAGACAGCCATTCCCGTGCTTTGG
ATCTCTCGGCTAGTCAGAGCCCTATGCAGTTCGTTGAATGTAACCAGAAG
CATAAGATCGAGATTGTGTCGGGACAGAAACGAGTTAATATTGCTTGGTA
TCATGGAGCTACATCTGCGGACATCAAAGAAGCCATAGCGCGACGGTTTT
CGCTTGTGCCGGGTACCCCATGGTCACTTGTGGACACGTTCTCCGATGAG
ATTATCGTGTCCGACGGAATGCCAAGTGGCCGATACCATCTAACAGTGTT
CCCATAG
back to top