Ggra10248.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10248.t1
Unique NameGgra10248.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:196930..197466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10248Ggra10248Gracilaria gracilis GNS1m malegenetig00000016_pilon 196930..197466 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10248.t1.start1Ggra10248.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 196930..196932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10248.t1.CDS1Ggra10248.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 196930..197466 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10248.t1.exon1Ggra10248.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 196930..197466 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10248.t1.stop1Ggra10248.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 197464..197466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10248.t1Ggra10248.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 196930..197466 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10248.t1 ID=Ggra10248.t1|Name=Ggra10248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=179bp
MARAEEEGLKEGAQLLAVNDARVHARHHQLQARAGGGAALLRVWPRCHGD
RVARPTKRTPCRLRLRRRRALIQPRRLDFSSCCDDDDDGGGAGAAGREAR
QGEARERGEGSERDEAVADEERGEAIEAQQRREAGGTDEHIEALRRVVMS
DTRQRFLERWNFDIVTGPTSGKYKWTLL*
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spliced messenger RNA

>Ggra10248.t1 ID=Ggra10248.t1|Name=Ggra10248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000016_pilon:196930..197466+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGAGCGGAGGAGGAGGGCTTGAAAGAGGGCGCGCAGCTGCTGGC
GGTGAACGACGCGCGCGTGCACGCGCGCCACCACCAGCTCCAAGCGCGGG
CAGGGGGCGGCGCGGCGCTGCTTCGCGTGTGGCCGCGCTGCCATGGCGAC
CGCGTGGCGCGCCCCACCAAGCGCACGCCGTGCCGGCTGCGGCTGCGTCG
GCGGCGCGCGCTCATTCAGCCGAGACGATTGGACTTTTCTAGCTGCTGcg
acgacgacgacgacggcggcggcgccggcgccgccgGGCGCGAGGCGCGC
CAAGGCGAGGCGCGAGAGCGCGGAGAGGGCAGCGAACGTGATGAGGCGGT
TGCGGACGAGGAGCGCGGCGAGGCGATCGAGGCGCAGCAACGGCGCGAGG
CCGGCGGCACCGATGAACATATCGAGGCGTTGAGACGCGTGGTGATGAGC
GATACCAGACAACGCTTCTTGGAGCGGTGGAACTTTGACATTGTGACGGG
GCCCACCAGCGGCAAGTACAAGTGGACTTTGCTATGA
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protein sequence of Ggra10248.t1

>Ggra10248.t1 ID=Ggra10248.t1|Name=Ggra10248.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=179bp
MARAEEEGLKEGAQLLAVNDARVHARHHQLQARAGGGAALLRVWPRCHGD
RVARPTKRTPCRLRLRRRRALIQPRRLDFSSCCDDDDDGGGAGAAGREAR
QGEARERGEGSERDEAVADEERGEAIEAQQRREAGGTDEHIEALRRVVMS
DTRQRFLERWNFDIVTGPTSGKYKWTLL*
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mRNA from alignment at tig00000016_pilon:196930..197466+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10248.t1 ID=Ggra10248.t1|Name=Ggra10248.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000016_pilon:196930..197466+ (Gracilaria gracilis GNS1m male)
ATGGCGCGAGCGGAGGAGGAGGGCTTGAAAGAGGGCGCGCAGCTGCTGGC
GGTGAACGACGCGCGCGTGCACGCGCGCCACCACCAGCTCCAAGCGCGGG
CAGGGGGCGGCGCGGCGCTGCTTCGCGTGTGGCCGCGCTGCCATGGCGAC
CGCGTGGCGCGCCCCACCAAGCGCACGCCGTGCCGGCTGCGGCTGCGTCG
GCGGCGCGCGCTCATTCAGCCGAGACGATTGGACTTTTCTAGCTGCTGcg
acgacgacgacgacggcggcggcgccggcgccgccgGGCGCGAGGCGCGC
CAAGGCGAGGCGCGAGAGCGCGGAGAGGGCAGCGAACGTGATGAGGCGGT
TGCGGACGAGGAGCGCGGCGAGGCGATCGAGGCGCAGCAACGGCGCGAGG
CCGGCGGCACCGATGAACATATCGAGGCGTTGAGACGCGTGGTGATGAGC
GATACCAGACAACGCTTCTTGGAGCGGTGGAACTTTGACATTGTGACGGG
GCCCACCAGCGGCAAGTACAAGTGGACTTTGCTATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:196930..197466+

>Ggra10248.t1 ID=Ggra10248.t1|Name=Ggra10248.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00000016_pilon:196930..197466+ (Gracilaria gracilis GNS1m male)
ATGGCGCGAGCGGAGGAGGAGGGCTTGAAAGAGGGCGCGCAGCTGCTGGC
GGTGAACGACGCGCGCGTGCACGCGCGCCACCACCAGCTCCAAGCGCGGG
CAGGGGGCGGCGCGGCGCTGCTTCGCGTGTGGCCGCGCTGCCATGGCGAC
CGCGTGGCGCGCCCCACCAAGCGCACGCCGTGCCGGCTGCGGCTGCGTCG
GCGGCGCGCGCTCATTCAGCCGAGACGATTGGACTTTTCTAGCTGCTGcg
acgacgacgacgacggcggcggcgccggcgccgccgGGCGCGAGGCGCGC
CAAGGCGAGGCGCGAGAGCGCGGAGAGGGCAGCGAACGTGATGAGGCGGT
TGCGGACGAGGAGCGCGGCGAGGCGATCGAGGCGCAGCAACGGCGCGAGG
CCGGCGGCACCGATGAACATATCGAGGCGTTGAGACGCGTGGTGATGAGC
GATACCAGACAACGCTTCTTGGAGCGGTGGAACTTTGACATTGTGACGGG
GCCCACCAGCGGCAAGTACAAGTGGACTTTGCTATGA
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