Ggra10245.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10245.t1
Unique NameGgra10245.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length79
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:192667..192974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog84751.XP_007882169.1
Max annot lvl4751|Fungi
Evalue2.24e-13
EggNOG OGs2E0HZ@1|root,2S7Y8@2759|Eukaryota,3A8KD@33154|Opisthokonta,3P714@4751|Fungi,3V2I5@5204|Basidiomycota,3N5P8@452284|Ustilaginomycotina
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10245Ggra10245Gracilaria gracilis GNS1m malegenetig00000016_pilon 192667..192974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10245.t1Ggra10245.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 192667..192974 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10245.t1.start1Ggra10245.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 192667..192669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10245.t1.CDS1Ggra10245.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 192667..192828 +
Ggra10245.t1.CDS2Ggra10245.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 192900..192974 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10245.t1.exon1Ggra10245.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 192667..192828 +
Ggra10245.t1.exon2Ggra10245.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 192900..192974 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10245.t1.intron1Ggra10245.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 192829..192899 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10245.t1.stop1Ggra10245.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 192972..192974 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10245.t1 ID=Ggra10245.t1|Name=Ggra10245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=79bp
MAGGNAKYPVPGEPYGGFKPAAPARWHSRLGYAFGVTMWLWVFYRAKNDL
PHMLGLEKPWDHHHHAAAHDEQHGEATH*
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spliced messenger RNA

>Ggra10245.t1 ID=Ggra10245.t1|Name=Ggra10245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=237bp|location=Sequence derived from alignment at tig00000016_pilon:192667..192974+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGCGGAAACGCAAAGTACCCCGTGCCGGGCGAGCCCTACGGCGG
CTTCAAGCCCGCCGCGCCGGCGCGATGGCACTCGCGTCTCGGCTACGCCT
TTGGCGTCACCATGTGGTTGTGGGTGTTTTACCGAGCAAAGAACGATCTT
CCTCACATGCTTGGCCTTGAGAAACCGTGGGATCACCACCACCACGCCGC
CGCTCATGACGAGCAGCACGGAGAAGCCACGCATTAG
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protein sequence of Ggra10245.t1

>Ggra10245.t1 ID=Ggra10245.t1|Name=Ggra10245.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=79bp
MAGGNAKYPVPGEPYGGFKPAAPARWHSRLGYAFGVTMWLWVFYRAKNDL
PHMLGLEKPWDHHHHAAAHDEQHGEATH*
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mRNA from alignment at tig00000016_pilon:192667..192974+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10245.t1 ID=Ggra10245.t1|Name=Ggra10245.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=308bp|location=Sequence derived from alignment at tig00000016_pilon:192667..192974+ (Gracilaria gracilis GNS1m male)
ATGGCAGGCGGAAACGCAAAGTACCCCGTGCCGGGCGAGCCCTACGGCGG
CTTCAAGCCCGCCGCGCCGGCGCGATGGCACTCGCGTCTCGGCTACGCCT
TTGGCGTCACCATGTGGTTGTGGGTGTTTTACCGAGCAAAGAACGATCTT
CCTCACATGCTTGTACGTGCGCTGCTCCCGCTACGTTGCGCGCTTTCTTC
CGCACTTTGCTGACTACTTTTCTCGTGTGACAGGGCCTTGAGAAACCGTG
GGATCACCACCACCACGCCGCCGCTCATGACGAGCAGCACGGAGAAGCCA
CGCATTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:192667..192974+

>Ggra10245.t1 ID=Ggra10245.t1|Name=Ggra10245.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=237bp|location=Sequence derived from alignment at tig00000016_pilon:192667..192974+ (Gracilaria gracilis GNS1m male)
ATGGCAGGCGGAAACGCAAAGTACCCCGTGCCGGGCGAGCCCTACGGCGG
CTTCAAGCCCGCCGCGCCGGCGCGATGGCACTCGCGTCTCGGCTACGCCT
TTGGCGTCACCATGTGGTTGTGGGTGTTTTACCGAGCAAAGAACGATCTT
CCTCACATGCTTGGCCTTGAGAAACCGTGGGATCACCACCACCACGCCGC
CGCTCATGACGAGCAGCACGGAGAAGCCACGCATTAG
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