Ggra10244.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10244.t1
Unique NameGgra10244.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:191604..192308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707053.1
PFAMsECH_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00770,RC00831,RC00834,RC01086,RC01095,RC01098,RC01103
KEGG koko:K07511
KEGG ReactionR02685,R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06942
KEGG Pathwayko00062,ko00071,ko00280,ko00310,ko00380,ko00410,ko00627,ko00640,ko00650,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00062,map00071,map00280,map00310,map00380,map00410,map00627,map00640,map00650,map00930,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00013,M00032,M00085,M00087
Evalue1.84e-81
EggNOG OGsCOG1024@1|root,KOG1680@2759|Eukaryota
EC4.2.1.17
Descriptionenoyl-CoA hydratase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10244Ggra10244Gracilaria gracilis GNS1m malegenetig00000016_pilon 191604..192308 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10244.t1.start1Ggra10244.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 191604..191606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10244.t1.CDS1Ggra10244.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 191604..192308 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10244.t1.exon1Ggra10244.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 191604..192308 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10244.t1.stop1Ggra10244.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 192306..192308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10244.t1Ggra10244.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 191604..192308 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10244.t1 ID=Ggra10244.t1|Name=Ggra10244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=235bp
MNALNEHTIREIVAATQGFEHDPTVSVIIVTGSKRVFAAGNDIEEMAANS
YHAARFRRDIGSWTDHIAAVKKPIIAAVSGFALGGGCELVMAADIVIASE
DAQFGQPEVQLGTLPSAGGTQRLVRAVGKAKAMELVLTGRQMNASEAESV
GLVTRVARNGEALKEAKDVAAIIARYSTPVVVAAKECVNVAFESSLSQGL
LFEKRAFQATFGLDDQKEGMKAFIDQRKPSFKNR*
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spliced messenger RNA

>Ggra10244.t1 ID=Ggra10244.t1|Name=Ggra10244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000016_pilon:191604..192308+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCGCTCAACGAGCACACCATCCGCGAAATCGTGGCCGCCACGCA
GGGCTTTGAGCACGACCCCACCGTCAGCGTGATCATCGTGACGGGCAGCA
AGCGCGTGTTCGCCGCCGGCAACGACATCGAAGAGATGGCCGCCAACTCG
TACCACGCCGCGCGCTTCCGCCGCGACATTGGCAGCTGGACGGACCACAT
TGCGGCCGTGAAAAAGCCCATCATCGCGGCGGTGTCGGGCTTCGCGCTGG
GAGGCGGGTGCGAGCTGGTGATGGCGGCTGACATTGTGATTGcgtcggaa
gacgcgcagttcggacagccggaggttcagctgggcacgctaccgagcgc
gggcggcacgcagcgactggtgagagcggtgggcaaggccaaggcgatgg
agctggtgCTGACGGGGCGACAGATGAACGCCAGCGAGGCGGAGAGCGTG
GGACTGGTGACCAGGGTGGCCAGGAACGGCGAGGCGCTCAAGGAGGCCAA
GGACGTGGCGGCCATCATTGCGCGATACTCCACGCCGGTGGTGGTTGCGG
CGAAGGAATGCGTGAATGTGGCGTTTGAAAGCAGCTTGTCGCAGGGGCTG
CTGTTCGAGAAACGCGCGTTTCAGGCTACGTTCGGGCTGGATGATCAGAA
GGAGGGCATGAAGGCGTTCATCGATCAGCGCAAGCCCAGCTTCAAGAACC
GATAG
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protein sequence of Ggra10244.t1

>Ggra10244.t1 ID=Ggra10244.t1|Name=Ggra10244.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MNALNEHTIREIVAATQGFEHDPTVSVIIVTGSKRVFAAGNDIEEMAANS
YHAARFRRDIGSWTDHIAAVKKPIIAAVSGFALGGGCELVMAADIVIASE
DAQFGQPEVQLGTLPSAGGTQRLVRAVGKAKAMELVLTGRQMNASEAESV
GLVTRVARNGEALKEAKDVAAIIARYSTPVVVAAKECVNVAFESSLSQGL
LFEKRAFQATFGLDDQKEGMKAFIDQRKPSFKNR*
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mRNA from alignment at tig00000016_pilon:191604..192308+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10244.t1 ID=Ggra10244.t1|Name=Ggra10244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000016_pilon:191604..192308+ (Gracilaria gracilis GNS1m male)
ATGAACGCGCTCAACGAGCACACCATCCGCGAAATCGTGGCCGCCACGCA
GGGCTTTGAGCACGACCCCACCGTCAGCGTGATCATCGTGACGGGCAGCA
AGCGCGTGTTCGCCGCCGGCAACGACATCGAAGAGATGGCCGCCAACTCG
TACCACGCCGCGCGCTTCCGCCGCGACATTGGCAGCTGGACGGACCACAT
TGCGGCCGTGAAAAAGCCCATCATCGCGGCGGTGTCGGGCTTCGCGCTGG
GAGGCGGGTGCGAGCTGGTGATGGCGGCTGACATTGTGATTGcgtcggaa
gacgcgcagttcggacagccggaggttcagctgggcacgctaccgagcgc
gggcggcacgcagcgactggtgagagcggtgggcaaggccaaggcgatgg
agctggtgCTGACGGGGCGACAGATGAACGCCAGCGAGGCGGAGAGCGTG
GGACTGGTGACCAGGGTGGCCAGGAACGGCGAGGCGCTCAAGGAGGCCAA
GGACGTGGCGGCCATCATTGCGCGATACTCCACGCCGGTGGTGGTTGCGG
CGAAGGAATGCGTGAATGTGGCGTTTGAAAGCAGCTTGTCGCAGGGGCTG
CTGTTCGAGAAACGCGCGTTTCAGGCTACGTTCGGGCTGGATGATCAGAA
GGAGGGCATGAAGGCGTTCATCGATCAGCGCAAGCCCAGCTTCAAGAACC
GATAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:191604..192308+

>Ggra10244.t1 ID=Ggra10244.t1|Name=Ggra10244.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00000016_pilon:191604..192308+ (Gracilaria gracilis GNS1m male)
ATGAACGCGCTCAACGAGCACACCATCCGCGAAATCGTGGCCGCCACGCA
GGGCTTTGAGCACGACCCCACCGTCAGCGTGATCATCGTGACGGGCAGCA
AGCGCGTGTTCGCCGCCGGCAACGACATCGAAGAGATGGCCGCCAACTCG
TACCACGCCGCGCGCTTCCGCCGCGACATTGGCAGCTGGACGGACCACAT
TGCGGCCGTGAAAAAGCCCATCATCGCGGCGGTGTCGGGCTTCGCGCTGG
GAGGCGGGTGCGAGCTGGTGATGGCGGCTGACATTGTGATTGcgtcggaa
gacgcgcagttcggacagccggaggttcagctgggcacgctaccgagcgc
gggcggcacgcagcgactggtgagagcggtgggcaaggccaaggcgatgg
agctggtgCTGACGGGGCGACAGATGAACGCCAGCGAGGCGGAGAGCGTG
GGACTGGTGACCAGGGTGGCCAGGAACGGCGAGGCGCTCAAGGAGGCCAA
GGACGTGGCGGCCATCATTGCGCGATACTCCACGCCGGTGGTGGTTGCGG
CGAAGGAATGCGTGAATGTGGCGTTTGAAAGCAGCTTGTCGCAGGGGCTG
CTGTTCGAGAAACGCGCGTTTCAGGCTACGTTCGGGCTGGATGATCAGAA
GGAGGGCATGAAGGCGTTCATCGATCAGCGCAAGCCCAGCTTCAAGAACC
GATAG
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