Ggra10242.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10242.t1
Unique NameGgra10242.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:188387..189088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7460.GB54335-PA
PFAMsAlba,Rpp20
Max annot lvl33208|Metazoa
KEGG koko:K14527
KEGG Pathwayko03008,ko03013,map03008,map03013
GOsGO:0000172,GO:0000966,GO:0001682,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0005732,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030677,GO:0030678,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098798,GO:0099116,GO:1901360,GO:1902494,GO:1902555,GO:1905348,GO:1990904
Evalue3.06e-11
EggNOG OGsKOG3631@1|root,KOG3631@2759|Eukaryota,3A5MY@33154|Opisthokonta,3BV57@33208|Metazoa,3DBHC@33213|Bilateria,4211D@6656|Arthropoda,3SPMM@50557|Insecta,46MN3@7399|Hymenoptera
EC3.1.26.5
DescriptionComponent of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP complex, which cleaves pre-rRNA sequences
COG categoryL
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10242Ggra10242Gracilaria gracilis GNS1m malegenetig00000016_pilon 188387..189088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10242.t1Ggra10242.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 188387..189088 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10242.t1.stop1Ggra10242.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 188387..188389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10242.t1.CDS1Ggra10242.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 188387..188467 -
Ggra10242.t1.CDS2Ggra10242.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 188571..188851 -
Ggra10242.t1.CDS3Ggra10242.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 188932..189088 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10242.t1.exon1Ggra10242.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 188387..188467 -
Ggra10242.t1.exon2Ggra10242.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 188571..188851 -
Ggra10242.t1.exon3Ggra10242.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 188932..189088 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10242.t1.intron1Ggra10242.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 188468..188570 -
Ggra10242.t1.intron2Ggra10242.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 188852..188931 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10242.t1.start1Ggra10242.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 189086..189088 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10242.t1 ID=Ggra10242.t1|Name=Ggra10242.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=173bp
MSHKRKRPTASSIDGADAASQPQPQPPPSQPQPPPSQPQPPPSPPPPSQA
AQYRITRRVARSEQLGASSARAIHVSRRTNLHALHKRVQRLLTLQRAPVQ
LHAMGAAINKCCQLALALRRRARGALALQLRTSTQLVYDDYEPLVEGLDM
FTKSRNVSAVHVTISRTALFVQ*
back to top

spliced messenger RNA

>Ggra10242.t1 ID=Ggra10242.t1|Name=Ggra10242.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000016_pilon:188387..189088- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCACAAGCGCAAACGACCGACTGCGTCGTCCATCGACGGCGCCGA
CGCAGCGTCGCAGCCGCAGCCGCAGCCGCCGCCGTCGCAGCCGCAGCCGC
CGCCGTCGCAGCCGCAGCCGCCGCCGTCGCCGCCGCCACCCTCACAAGCC
GCGCAGTATCGCATCACTCGACGCGTGGCGCGCAGCGAGCAGTTGGGCGC
GTCGTCGGCGCGCGCCATTCACGTGTCGCGTCGCACCAACTTGCACGCGC
TGCACAAACGCGTGCAGCGGCTGTTGACGCTGCAGCGCGCGCCGGTGCAG
CTGCACGCCATGGGCGCCGCCATCAACAAGTGCTGCCAGCTGGCGCTGGC
GCTGCGCCGCCGCGCGCGCGGCGCGCTGGCGCTGCAGCTGCGCACCAGCA
CGCAGCTGGTGTACGACGACTATGAGCCGCTGGTGGAGGGCCTCGATATG
TTCACCAAGTCTCGTAACGTCTCGGCGGTGCACGTCACCATCAGCCGCAC
CGCCTTGTTTGTGCAATAA
back to top

protein sequence of Ggra10242.t1

>Ggra10242.t1 ID=Ggra10242.t1|Name=Ggra10242.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MSHKRKRPTASSIDGADAASQPQPQPPPSQPQPPPSQPQPPPSPPPPSQA
AQYRITRRVARSEQLGASSARAIHVSRRTNLHALHKRVQRLLTLQRAPVQ
LHAMGAAINKCCQLALALRRRARGALALQLRTSTQLVYDDYEPLVEGLDM
FTKSRNVSAVHVTISRTALFVQ*
back to top

mRNA from alignment at tig00000016_pilon:188387..189088-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10242.t1 ID=Ggra10242.t1|Name=Ggra10242.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000016_pilon:188387..189088- (Gracilaria gracilis GNS1m male)
ATGTCGCACAAGCGCAAACGACCGACTGCGTCGTCCATCGACGGCGCCGA
CGCAGCGTCGCAGCCGCAGCCGCAGCCGCCGCCGTCGCAGCCGCAGCCGC
CGCCGTCGCAGCCGCAGCCGCCGCCGTCGCCGCCGCCACCCTCACAAGCC
GCGCAGTGTACGTTCGCTACCCCGCGCTCATCATGTGCCTCTACGCGCGC
GCACCGCTAACGCGCGCTTCTTGTTTTCGGCGCGCAGATCGCATCACTCG
ACGCGTGGCGCGCAGCGAGCAGTTGGGCGCGTCGTCGGCGCGCGCCATTC
ACGTGTCGCGTCGCACCAACTTGCACGCGCTGCACAAACGCGTGCAGCGG
CTGTTGACGCTGCAGCGCGCGCCGGTGCAGCTGCACGCCATGGGCGCCGC
CATCAACAAGTGCTGCCAGCTGGCGCTGGCGCTGCGCCGCCGCGCGCGCG
GCGCGCTGGCGCTGCAGCTGCGCACCAGCACGCAGCTGGTGTACGACGAC
TATGAGCCGCTGGTGGAGGTAAGTGTTTCACGCTTGTTGCGTGCCGTTGC
TCGTTGCGTCATGCTTGGTACCGCTCGCATCTAACCGTCGCGTGTTGCTT
CCTTCATAACTCACACTACAGGGCCTCGATATGTTCACCAAGTCTCGTAA
CGTCTCGGCGGTGCACGTCACCATCAGCCGCACCGCCTTGTTTGTGCAAT
AA
back to top

Coding sequence (CDS) from alignment at tig00000016_pilon:188387..189088-

>Ggra10242.t1 ID=Ggra10242.t1|Name=Ggra10242.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00000016_pilon:188387..189088- (Gracilaria gracilis GNS1m male)
ATGTCGCACAAGCGCAAACGACCGACTGCGTCGTCCATCGACGGCGCCGA
CGCAGCGTCGCAGCCGCAGCCGCAGCCGCCGCCGTCGCAGCCGCAGCCGC
CGCCGTCGCAGCCGCAGCCGCCGCCGTCGCCGCCGCCACCCTCACAAGCC
GCGCAGTATCGCATCACTCGACGCGTGGCGCGCAGCGAGCAGTTGGGCGC
GTCGTCGGCGCGCGCCATTCACGTGTCGCGTCGCACCAACTTGCACGCGC
TGCACAAACGCGTGCAGCGGCTGTTGACGCTGCAGCGCGCGCCGGTGCAG
CTGCACGCCATGGGCGCCGCCATCAACAAGTGCTGCCAGCTGGCGCTGGC
GCTGCGCCGCCGCGCGCGCGGCGCGCTGGCGCTGCAGCTGCGCACCAGCA
CGCAGCTGGTGTACGACGACTATGAGCCGCTGGTGGAGGGCCTCGATATG
TTCACCAAGTCTCGTAACGTCTCGGCGGTGCACGTCACCATCAGCCGCAC
CGCCTTGTTTGTGCAATAA
back to top