Ggra10241.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10241.t1
Unique NameGgra10241.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:187695..188234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10241Ggra10241Gracilaria gracilis GNS1m malegenetig00000016_pilon 187695..188234 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10241.t1.stop1Ggra10241.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 187695..187697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10241.t1.CDS1Ggra10241.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 187695..188234 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10241.t1.exon1Ggra10241.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 187695..188234 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10241.t1.start1Ggra10241.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 188232..188234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10241.t1Ggra10241.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 187695..188234 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10241.t1 ID=Ggra10241.t1|Name=Ggra10241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=180bp
MSTWTPTTAPPLMRHDWVPPIDADEPLSERAVLALEAALHQRRDQARQLR
APQPMGLCVAAPKRAQHAPSDADSRHLRDDDDHHMHDVQSDAMSASDFGA
LSHTSSMHEDAALRHGHEQQLATHHHGRHQQQQQQQQQQGEEGEEEEGEE
EEEEEEGEGDDDHYEHDDDDDDDDLARYL*
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spliced messenger RNA

>Ggra10241.t1 ID=Ggra10241.t1|Name=Ggra10241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000016_pilon:187695..188234- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACGTGGACGCCCACCACCGCGCCGCCGCTCATGCGCCACGACTG
GGTACCGCCCATCGACGCCGACGAGCCGCTCTCCGAGCGCGCCGTGCTCG
CGCTGGAGGCCGCGCTGCACCAGCGCCGCGATCAGGCGCGCCAGCTGCGC
GCGCCGCAGCCCATGGGCCTGTGCGTGGCCGCGCCCAAGCGCGCGCAGCA
CGCCCCGTCCGACGCCGACAGTCGCCACCTGCGCGACGACGACGACCACC
ATATGCACGATGTGCAGAGTGACGCCATGTCCGCCAGTGACTTTGGCGCG
CTTAGTCACACTTCCTCCATGCACGAAGACGCCGCGCTGCGTCACGGCCA
CGAACAGCAGCTCGCCACGCACCACCACGGGCGGCACCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGGGGGAGGAGGGGGAGGAGGAGGAGGGGGAGGAG
GAGGAGGAGGAGGAGGAGGGAGAAGGGGACGACGATCACTACGAGCATGA
TGATGATGATGATGATGACGACTTGGCGCGTTATTTGTAG
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protein sequence of Ggra10241.t1

>Ggra10241.t1 ID=Ggra10241.t1|Name=Ggra10241.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=180bp
MSTWTPTTAPPLMRHDWVPPIDADEPLSERAVLALEAALHQRRDQARQLR
APQPMGLCVAAPKRAQHAPSDADSRHLRDDDDHHMHDVQSDAMSASDFGA
LSHTSSMHEDAALRHGHEQQLATHHHGRHQQQQQQQQQQGEEGEEEEGEE
EEEEEEGEGDDDHYEHDDDDDDDDLARYL*
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mRNA from alignment at tig00000016_pilon:187695..188234-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10241.t1 ID=Ggra10241.t1|Name=Ggra10241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000016_pilon:187695..188234- (Gracilaria gracilis GNS1m male)
ATGAGCACGTGGACGCCCACCACCGCGCCGCCGCTCATGCGCCACGACTG
GGTACCGCCCATCGACGCCGACGAGCCGCTCTCCGAGCGCGCCGTGCTCG
CGCTGGAGGCCGCGCTGCACCAGCGCCGCGATCAGGCGCGCCAGCTGCGC
GCGCCGCAGCCCATGGGCCTGTGCGTGGCCGCGCCCAAGCGCGCGCAGCA
CGCCCCGTCCGACGCCGACAGTCGCCACCTGCGCGACGACGACGACCACC
ATATGCACGATGTGCAGAGTGACGCCATGTCCGCCAGTGACTTTGGCGCG
CTTAGTCACACTTCCTCCATGCACGAAGACGCCGCGCTGCGTCACGGCCA
CGAACAGCAGCTCGCCACGCACCACCACGGGCGGCACCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGGGGGAGGAGGGGGAGGAGGAGGAGGGGGAGGAG
GAGGAGGAGGAGGAGGAGGGAGAAGGGGACGACGATCACTACGAGCATGA
TGATGATGATGATGATGACGACTTGGCGCGTTATTTGTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:187695..188234-

>Ggra10241.t1 ID=Ggra10241.t1|Name=Ggra10241.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000016_pilon:187695..188234- (Gracilaria gracilis GNS1m male)
ATGAGCACGTGGACGCCCACCACCGCGCCGCCGCTCATGCGCCACGACTG
GGTACCGCCCATCGACGCCGACGAGCCGCTCTCCGAGCGCGCCGTGCTCG
CGCTGGAGGCCGCGCTGCACCAGCGCCGCGATCAGGCGCGCCAGCTGCGC
GCGCCGCAGCCCATGGGCCTGTGCGTGGCCGCGCCCAAGCGCGCGCAGCA
CGCCCCGTCCGACGCCGACAGTCGCCACCTGCGCGACGACGACGACCACC
ATATGCACGATGTGCAGAGTGACGCCATGTCCGCCAGTGACTTTGGCGCG
CTTAGTCACACTTCCTCCATGCACGAAGACGCCGCGCTGCGTCACGGCCA
CGAACAGCAGCTCGCCACGCACCACCACGGGCGGCACCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGGGGGAGGAGGGGGAGGAGGAGGAGGGGGAGGAG
GAGGAGGAGGAGGAGGAGGGAGAAGGGGACGACGATCACTACGAGCATGA
TGATGATGATGATGATGACGACTTGGCGCGTTATTTGTAG
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