Ggra10237.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10237.t1
Unique Name	Ggra10237.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	623

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:179373..181241 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMC180CT
Preferred name	PDI1
PFAMs	Thioredoxin,Thioredoxin_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01829,ko:K09580,ko:K09584
KEGG Pathway	ko04141,map04141
GOs	GO:0000003,GO:0001666,GO:0003674,GO:0003756,GO:0003824,GO:0004656,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005793,GO:0005886,GO:0006082,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006516,GO:0006517,GO:0006520,GO:0006575,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009628,GO:0009897,GO:0009966,GO:0009986,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010646,GO:0010941,GO:0012505,GO:0015035,GO:0015036,GO:0015037,GO:0016020,GO:0016043,GO:0016222,GO:0016491,GO:0016667,GO:0016671,GO:0016705,GO:0016706,GO:0016853,GO:0016860,GO:0016864,GO:0018126,GO:0018193,GO:0018208,GO:0018401,GO:0019153,GO:0019221,GO:0019471,GO:0019511,GO:0019538,GO:0019752,GO:0019798,GO:0019941,GO:0019953,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030163,GO:0030433,GO:0031543,GO:0031545,GO:0031974,GO:0032501,GO:0032991,GO:0033554,GO:0034097,GO:0034377,GO:0034378,GO:0034379,GO:0034975,GO:0034976,GO:0035722,GO:0035977,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0036507,GO:0036508,GO:0038155,GO:0042221,GO:0042981,GO:0043062,GO:0043067,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043632,GO:0043687,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044877,GO:0046596,GO:0046598,GO:0046982,GO:0046983,GO:0048518,GO:0048524,GO:0048583,GO:0050789,GO:0050792,GO:0050794,GO:0050839,GO:0050896,GO:0051082,GO:0051213,GO:0051603,GO:0051704,GO:0051716,GO:0055114,GO:0065003,GO:0065005,GO:0065007,GO:0070013,GO:0070482,GO:0070671,GO:0070887,GO:0071310,GO:0071345,GO:0071349,GO:0071453,GO:0071456,GO:0071704,GO:0071825,GO:0071827,GO:0071840,GO:0071944,GO:0080134,GO:0080135,GO:0097006,GO:0097466,GO:0098552,GO:0140096,GO:1900407,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901698,GO:1901700,GO:1902175,GO:1902494,GO:1902531,GO:1902882,GO:1903201,GO:1903900,GO:1903902,GO:1904382,GO:1904587,GO:1990204,GO:2001233,GO:2001242
Evalue	4.26e-81
EggNOG OGs	COG0526@1\|root,KOG0190@2759\|Eukaryota
EC	5.3.4.1
Description	intramolecular oxidoreductase activity, transposing S-S bonds
COG category	CO
BRITE	ko00000,ko00001,ko01000,ko03110,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10237	Ggra10237	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 179373..181241 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10237.t1.start1	Ggra10237.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 179373..179375 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10237.t1.CDS1	Ggra10237.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 179373..181241 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10237.t1.exon1	Ggra10237.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 179373..181241 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10237.t1.stop1	Ggra10237.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 181239..181241 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10237.t1	Ggra10237.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 179373..181241 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:179373..181241+
coding sequence from alignment at tig00000016_pilon:179373..181241+

mRNA sequence

>Ggra10237.t1 ID=Ggra10237.t1|Name=Ggra10237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=623bp
MSPATWQQGGSKIRYYTFVYLSSTLLHQQDTFATVDIRHLNQHQVHRPIT
ALRCALLFVLLSTYVSTFARINPDPRLAVEGSLSQIHALVHLHRGIAFSS
TMLSPRFLLLSVAAALLLVVSADNVIKLTKDDFDAVIAKEPLVFIKFFAP
WCGHCQSMKEDFENAAAEMKGKAVLADVDATEESELAQKYNVEGFPTLKL
FSNGVELTDYNGARDKESMIKFIERATLPPFQTIADADGYKKFADHNSAK
HIIVAAALEGASLQKFKKAIFSIRDVMPDSFEFAHSDDPAIFGIDTMSKG
DFYILRREADGTRKEVKYDTESEESLEKFVKTATLPAFQEFTQENAEMYT
ELSMPLVVGFYENCDGEQCKAIESIALKKKHNGKVAFAWVNSVELASFQE
YVQLQGAAVPIGAYSFEADARYSLPQEFKFSEEALEKWVDDLMDGKIEPA
RKSEAIPEENDGPVFKVVGDSWADIVEDPTKDVMIAQVAEWCGHCSKLKP
IYAKVATELKKAGVEHVRLAMMEATENDAPEEFKARGFPTIHFFKAGKEQ
KGVEFEGDRSSKGMIEWIKEHTSSKFEFDTSTLGEDPEPEYEEEEFDEED
DYGYEGDEEDENEEKNEEKTEL*

spliced messenger RNA

>Ggra10237.t1 ID=Ggra10237.t1|Name=Ggra10237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1869bp|location=Sequence derived from alignment at tig00000016_pilon:179373..181241+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCTGCCACCTGGCAACAAGGCGGCTCCAAGATAAGATATTATAC
CTTCGTGTATTTGTCTTCGACATTGTTGCATCAACAAGACACGTTTGCCA
CCGTTGACATCCGCCATCTCAATCAACACCAAGTGCACCGTCCAATTACT
GCGCTTCGATGCGCCCTTTTGTTCGTACTGCTGAGCACCTATGTCAGCAC
CTTCGCGCGCATAAATCCCGATCCCCGACTGGCGGTTGAGGGATCCCTGT
CTCAGATCCATGCTCTTGTCCACCTCCATCGGGGCATAGCGTTTTCCTCC
ACCATGCTCTCACCACGTTTCCTCCTGCTTTCTGTCGCGGCAGCACTGCT
GCTCGTCGTTTCCGCAGACAATGTTATCAAGCTGACCAAGGATGACTTCG
ATGCTGTCATTGCAAAAGAACCTCTTGTTTTCATCAAATTCTTTGCACCA
TGGTGCGGACACTGTCAATCAATGAAAGAAGACTTTGAGAACGCCGCCGC
GGAAATGAAAGGAAAGGCCGTTCTAGCCGATGTCGACGCTACTGAAGAAA
GTGAGCTTGCCCAAAAGTATAACGTTGAAGGCTTCCCCACCTTGAAACTC
TTCTCCAATGGTGTGGAACTCACCGACTACAATGGAGCGCGCGATAAGGA
ATCCATGATCAAGTTCATTGAGCGCGCTACTTTGCCGCCGTTTCAGACAA
TTGCTGATGCGGATGGCTACAAGAAGTTCGCCGATCACAATTCGGCCAAG
CATATAATCGTGGCCGCTGCTTTGGAGGGGGCGTCGCTCCAGAAATTCAA
GAAGGCTATCTTCAGTATTCGAGACGTCATGCCAGACTCATTTGAATTTG
CGCATTCGGATGATCCTGCAATCTTCGGTATCGACACCATGAGCAAGGGA
GACTTCTACATTCTGCGTCGTGAGGCCGATGGAACTCGCAAAGAAGTGAA
GTATGACACTGAGTCTGAGGAATCCCTCGAAAAGTTCGTCAAGACAGCTA
CGCTACCCGCTTTCCAGGAATTCACACAGGAGAACGCTGAGATGTACACT
GAGCTCAGTATGCCCCTTGTAGTGGGCTTCTACGAAAACTGTGATGGCGA
GCAATGTAAGGCCATTGAATCGATTGCTTTAAAGAAGAAGCACAATGGAA
AGGTGGCATTCGCATGGGTCAATTCTGTTGAGCTCGCTAGCTTCCAAGAA
TATGTTCAGCTTCAGGGTGCCGCCGTTCCAATCGGTGCTTATTCGTTCGA
GGCGGATGCGCGCTACAGCCTTCCGCAAGAGTTCAAGTTCTCTGAGGAGG
CTCTCGAGAAGTGGGTGGACGATCTGATGGATGGTAAGATTGAGCCTGCG
CGCAAATCCGAAGCAATTCCTGAGGAGAATGATGGACCTGTATTCAAAGT
GGTGGGAGACTCATGGGCAGATATTGTTGAAGACCCTACCAAGGACGTGA
TGATTGCGCAGGTTGCTGAATGGTGCGGACATTGTTCGAAGCTAAAACCA
ATCTACGCAAAGGTGGCTACGGAGTTGAAGAAGGCTGGCGTTGAGCACGT
GAGGCTTGCTATGATGGAGGCAACAGAAAATGATGCTCCTGAAGAATTCA
AGGCGCGTGGGTTCCCTACGATTCACTTCTTCAAGGCTGGCAAGGAGCAA
AAGGGAGTGGAGTTTGAAGGCGACCGTTCGTCAAAGGGAATGATCGAATG
GATTAAAGAGCACACTTCGAGCAAGTTCGAGTTTGACACCTCCACTTTGG
GAGAGGACCCAGAGCCGGAATATGAGGAGGAAGAGTTCGATGAGGAAGAT
GACTATGGATATGAAGGTGACGAGGAGGATGAGAATGAAGAGAAGAATGA
AGAGAAGACCGAGTTGTAA

protein sequence of Ggra10237.t1

>Ggra10237.t1 ID=Ggra10237.t1|Name=Ggra10237.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=623bp
MSPATWQQGGSKIRYYTFVYLSSTLLHQQDTFATVDIRHLNQHQVHRPIT
ALRCALLFVLLSTYVSTFARINPDPRLAVEGSLSQIHALVHLHRGIAFSS
TMLSPRFLLLSVAAALLLVVSADNVIKLTKDDFDAVIAKEPLVFIKFFAP
WCGHCQSMKEDFENAAAEMKGKAVLADVDATEESELAQKYNVEGFPTLKL
FSNGVELTDYNGARDKESMIKFIERATLPPFQTIADADGYKKFADHNSAK
HIIVAAALEGASLQKFKKAIFSIRDVMPDSFEFAHSDDPAIFGIDTMSKG
DFYILRREADGTRKEVKYDTESEESLEKFVKTATLPAFQEFTQENAEMYT
ELSMPLVVGFYENCDGEQCKAIESIALKKKHNGKVAFAWVNSVELASFQE
YVQLQGAAVPIGAYSFEADARYSLPQEFKFSEEALEKWVDDLMDGKIEPA
RKSEAIPEENDGPVFKVVGDSWADIVEDPTKDVMIAQVAEWCGHCSKLKP
IYAKVATELKKAGVEHVRLAMMEATENDAPEEFKARGFPTIHFFKAGKEQ
KGVEFEGDRSSKGMIEWIKEHTSSKFEFDTSTLGEDPEPEYEEEEFDEED
DYGYEGDEEDENEEKNEEKTEL*

mRNA from alignment at tig00000016_pilon:179373..181241+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10237.t1 ID=Ggra10237.t1|Name=Ggra10237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1869bp|location=Sequence derived from alignment at tig00000016_pilon:179373..181241+ (Gracilaria gracilis GNS1m male)
ATGTCGCCTGCCACCTGGCAACAAGGCGGCTCCAAGATAAGATATTATAC
CTTCGTGTATTTGTCTTCGACATTGTTGCATCAACAAGACACGTTTGCCA
CCGTTGACATCCGCCATCTCAATCAACACCAAGTGCACCGTCCAATTACT
GCGCTTCGATGCGCCCTTTTGTTCGTACTGCTGAGCACCTATGTCAGCAC
CTTCGCGCGCATAAATCCCGATCCCCGACTGGCGGTTGAGGGATCCCTGT
CTCAGATCCATGCTCTTGTCCACCTCCATCGGGGCATAGCGTTTTCCTCC
ACCATGCTCTCACCACGTTTCCTCCTGCTTTCTGTCGCGGCAGCACTGCT
GCTCGTCGTTTCCGCAGACAATGTTATCAAGCTGACCAAGGATGACTTCG
ATGCTGTCATTGCAAAAGAACCTCTTGTTTTCATCAAATTCTTTGCACCA
TGGTGCGGACACTGTCAATCAATGAAAGAAGACTTTGAGAACGCCGCCGC
GGAAATGAAAGGAAAGGCCGTTCTAGCCGATGTCGACGCTACTGAAGAAA
GTGAGCTTGCCCAAAAGTATAACGTTGAAGGCTTCCCCACCTTGAAACTC
TTCTCCAATGGTGTGGAACTCACCGACTACAATGGAGCGCGCGATAAGGA
ATCCATGATCAAGTTCATTGAGCGCGCTACTTTGCCGCCGTTTCAGACAA
TTGCTGATGCGGATGGCTACAAGAAGTTCGCCGATCACAATTCGGCCAAG
CATATAATCGTGGCCGCTGCTTTGGAGGGGGCGTCGCTCCAGAAATTCAA
GAAGGCTATCTTCAGTATTCGAGACGTCATGCCAGACTCATTTGAATTTG
CGCATTCGGATGATCCTGCAATCTTCGGTATCGACACCATGAGCAAGGGA
GACTTCTACATTCTGCGTCGTGAGGCCGATGGAACTCGCAAAGAAGTGAA
GTATGACACTGAGTCTGAGGAATCCCTCGAAAAGTTCGTCAAGACAGCTA
CGCTACCCGCTTTCCAGGAATTCACACAGGAGAACGCTGAGATGTACACT
GAGCTCAGTATGCCCCTTGTAGTGGGCTTCTACGAAAACTGTGATGGCGA
GCAATGTAAGGCCATTGAATCGATTGCTTTAAAGAAGAAGCACAATGGAA
AGGTGGCATTCGCATGGGTCAATTCTGTTGAGCTCGCTAGCTTCCAAGAA
TATGTTCAGCTTCAGGGTGCCGCCGTTCCAATCGGTGCTTATTCGTTCGA
GGCGGATGCGCGCTACAGCCTTCCGCAAGAGTTCAAGTTCTCTGAGGAGG
CTCTCGAGAAGTGGGTGGACGATCTGATGGATGGTAAGATTGAGCCTGCG
CGCAAATCCGAAGCAATTCCTGAGGAGAATGATGGACCTGTATTCAAAGT
GGTGGGAGACTCATGGGCAGATATTGTTGAAGACCCTACCAAGGACGTGA
TGATTGCGCAGGTTGCTGAATGGTGCGGACATTGTTCGAAGCTAAAACCA
ATCTACGCAAAGGTGGCTACGGAGTTGAAGAAGGCTGGCGTTGAGCACGT
GAGGCTTGCTATGATGGAGGCAACAGAAAATGATGCTCCTGAAGAATTCA
AGGCGCGTGGGTTCCCTACGATTCACTTCTTCAAGGCTGGCAAGGAGCAA
AAGGGAGTGGAGTTTGAAGGCGACCGTTCGTCAAAGGGAATGATCGAATG
GATTAAAGAGCACACTTCGAGCAAGTTCGAGTTTGACACCTCCACTTTGG
GAGAGGACCCAGAGCCGGAATATGAGGAGGAAGAGTTCGATGAGGAAGAT
GACTATGGATATGAAGGTGACGAGGAGGATGAGAATGAAGAGAAGAATGA
AGAGAAGACCGAGTTGTAA

Coding sequence (CDS) from alignment at tig00000016_pilon:179373..181241+

>Ggra10237.t1 ID=Ggra10237.t1|Name=Ggra10237.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1869bp|location=Sequence derived from alignment at tig00000016_pilon:179373..181241+ (Gracilaria gracilis GNS1m male)
ATGTCGCCTGCCACCTGGCAACAAGGCGGCTCCAAGATAAGATATTATAC
CTTCGTGTATTTGTCTTCGACATTGTTGCATCAACAAGACACGTTTGCCA
CCGTTGACATCCGCCATCTCAATCAACACCAAGTGCACCGTCCAATTACT
GCGCTTCGATGCGCCCTTTTGTTCGTACTGCTGAGCACCTATGTCAGCAC
CTTCGCGCGCATAAATCCCGATCCCCGACTGGCGGTTGAGGGATCCCTGT
CTCAGATCCATGCTCTTGTCCACCTCCATCGGGGCATAGCGTTTTCCTCC
ACCATGCTCTCACCACGTTTCCTCCTGCTTTCTGTCGCGGCAGCACTGCT
GCTCGTCGTTTCCGCAGACAATGTTATCAAGCTGACCAAGGATGACTTCG
ATGCTGTCATTGCAAAAGAACCTCTTGTTTTCATCAAATTCTTTGCACCA
TGGTGCGGACACTGTCAATCAATGAAAGAAGACTTTGAGAACGCCGCCGC
GGAAATGAAAGGAAAGGCCGTTCTAGCCGATGTCGACGCTACTGAAGAAA
GTGAGCTTGCCCAAAAGTATAACGTTGAAGGCTTCCCCACCTTGAAACTC
TTCTCCAATGGTGTGGAACTCACCGACTACAATGGAGCGCGCGATAAGGA
ATCCATGATCAAGTTCATTGAGCGCGCTACTTTGCCGCCGTTTCAGACAA
TTGCTGATGCGGATGGCTACAAGAAGTTCGCCGATCACAATTCGGCCAAG
CATATAATCGTGGCCGCTGCTTTGGAGGGGGCGTCGCTCCAGAAATTCAA
GAAGGCTATCTTCAGTATTCGAGACGTCATGCCAGACTCATTTGAATTTG
CGCATTCGGATGATCCTGCAATCTTCGGTATCGACACCATGAGCAAGGGA
GACTTCTACATTCTGCGTCGTGAGGCCGATGGAACTCGCAAAGAAGTGAA
GTATGACACTGAGTCTGAGGAATCCCTCGAAAAGTTCGTCAAGACAGCTA
CGCTACCCGCTTTCCAGGAATTCACACAGGAGAACGCTGAGATGTACACT
GAGCTCAGTATGCCCCTTGTAGTGGGCTTCTACGAAAACTGTGATGGCGA
GCAATGTAAGGCCATTGAATCGATTGCTTTAAAGAAGAAGCACAATGGAA
AGGTGGCATTCGCATGGGTCAATTCTGTTGAGCTCGCTAGCTTCCAAGAA
TATGTTCAGCTTCAGGGTGCCGCCGTTCCAATCGGTGCTTATTCGTTCGA
GGCGGATGCGCGCTACAGCCTTCCGCAAGAGTTCAAGTTCTCTGAGGAGG
CTCTCGAGAAGTGGGTGGACGATCTGATGGATGGTAAGATTGAGCCTGCG
CGCAAATCCGAAGCAATTCCTGAGGAGAATGATGGACCTGTATTCAAAGT
GGTGGGAGACTCATGGGCAGATATTGTTGAAGACCCTACCAAGGACGTGA
TGATTGCGCAGGTTGCTGAATGGTGCGGACATTGTTCGAAGCTAAAACCA
ATCTACGCAAAGGTGGCTACGGAGTTGAAGAAGGCTGGCGTTGAGCACGT
GAGGCTTGCTATGATGGAGGCAACAGAAAATGATGCTCCTGAAGAATTCA
AGGCGCGTGGGTTCCCTACGATTCACTTCTTCAAGGCTGGCAAGGAGCAA
AAGGGAGTGGAGTTTGAAGGCGACCGTTCGTCAAAGGGAATGATCGAATG
GATTAAAGAGCACACTTCGAGCAAGTTCGAGTTTGACACCTCCACTTTGG
GAGAGGACCCAGAGCCGGAATATGAGGAGGAAGAGTTCGATGAGGAAGAT
GACTATGGATATGAAGGTGACGAGGAGGATGAGAATGAAGAGAAGAATGA
AGAGAAGACCGAGTTGTAA