Ggra10235.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10235.t1
Unique Name	Ggra10235.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	464

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:173043..174434 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10235	Ggra10235	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 173043..174434 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10235.t1.start1	Ggra10235.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 173043..173045 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10235.t1.CDS1	Ggra10235.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 173043..174434 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10235.t1.exon1	Ggra10235.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 173043..174434 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10235.t1.stop1	Ggra10235.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 174432..174434 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10235.t1	Ggra10235.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 173043..174434 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:173043..174434+
coding sequence from alignment at tig00000016_pilon:173043..174434+

mRNA sequence

>Ggra10235.t1 ID=Ggra10235.t1|Name=Ggra10235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=464bp
MKWLTFFLSVLTAALLLGYFPAIAVQLDTTNRDSSCQTIRKSMKEAYYSQ
VDMLRRGLPRRVVQSEYVYAANYYAAYSSYFRNNDLNSTCVWTNLWYGLF
DYQDRAKWALDYLNKMRLWKPEINFLNFTQYPSLPDLSSSEITHIDALWH
NIDHRLKSTPRGGYVFEDFVFPNNVDVLYDPGKDLACDEYYKFGPLNSNN
SLPATKVFTVLGMASIKLFRDHGKKSSIEQMLKHFAGYAFDGVRCTGTER
EVLKIPSSLLGSYSRNLGFIFASCSKNPLASFSVEAFESVFADELSSLTS
YNSWGHIEYAKLVGRYSIPAIVNSVDTILDSHNFNALTSYGSSSSSGSDS
GSSSDDDHEMEADDRFLVAARQGSCSSGYVWLTRENPVSNSLEHCCAAVC
DIFALLSTTVDPYPHEECCYRCNEDHGCPSGLTEADVFDNDNTFIIVPEY
GEQSQQTVTMVDI*

spliced messenger RNA

>Ggra10235.t1 ID=Ggra10235.t1|Name=Ggra10235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000016_pilon:173043..174434+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGGTTGACTTTCTTCCTCTCGGTTCTTACGGCCGCACTCCTTCT
TGGATATTTTCCGGCGATTGCAGTGCAACTTGATACAACTAACCGAGATT
CTTCATGCCAGACGATACGTAAATCAATGAAGGAGGCTTACTACTCACAG
GTGGATATGCTTCGTCGCGGTTTACCGAGACGTGTGGTGCAATCGGAATA
CGTCTATGCTGCGAATTATTACGCTGCGTATAGTTCCTACTTCAGGAATA
ACGATCTAAACTCCACGTGCGTCTGGACAAATCTTTGGTATGGTCTCTTC
GACTACCAAGATAGAGCGAAGTGGGCGTTGGATTATCTAAATAAGATGAG
GTTATGGAAACCGGAAATCAACTTTCTCAACTTCACCCAGTATCCATCTC
TGCCAGACCTGAGTTCCAGTGAAATAACCCACATCGATGCCTTATGGCAT
AATATTGACCACCGCCTGAAAAGCACACCGCGAGGAGGTTATGTGTTCGA
AGACTTTGTGTTTCCGAACAATGTGGATGTATTGTACGATCCTGGGAAGG
ATCTAGCATGTGACGAGTACTACAAGTTTGGCCCCTTGAATAGCAACAAT
TCTCTGCCCGCCACCAAGGTCTTTACTGTATTAGGGATGGCGTCTATTAA
GCTGTTTCGTGACCATGGGAAAAAGTCTTCTATTGAACAAATGTTGAAGC
ATTTCGCGGGATATGCTTTCGACGGTGTTCGTTGTACTGGGACCGAAAGA
GAAGTTCTCAAGATCCCATCCAGTTTATTGGGCTCGTATTCTAGAAACTT
GGGATTCATTTTTGCATCATGTTCGAAGAATCCGTTAGCGTCTTTTTCAG
TCGAGGCATTTGAAAGCGTGTTTGCGGATGAATTAAGCTCACTAACTTCT
TACAACTCATGGGGACACATTGAATACGCAAAGCTCGTCGGAAGATACTC
GATTCCTGCGATAGTGAATTCAGTTGACACAATTCTTGACTCACACAATT
TTAATGCTCTAACGTCATATggttcgagttcgagctctggttcggattcg
ggctcaagctcggACGACGACCACGAAATGGAAGCCGACGACCGTTTTCT
TGTTGCTGCACGTCAAGGTAGTTGTAGTTCTGGGTATGTGTGGCTTACTC
GAGAGAATCCAGTCTCAAATTCTTTGGAGCACTGCTGCGCAGCCGTTTGT
GATATCTTCGCTCTGTTGTCAACCACAGTTGATCCCTACCCGCACGAAGA
ATGTTGTTATCGATGCAATGAGGATCACGGCTGTCCAAGTGGCTTGACCG
AGGCCGATGTTTTTGACAATGACAATACGTTCATCATTGTACCTGAATAT
GGGGAACAATCCCAACAGACGGTTACCATGGTCGACATCTAG

protein sequence of Ggra10235.t1

>Ggra10235.t1 ID=Ggra10235.t1|Name=Ggra10235.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=464bp
MKWLTFFLSVLTAALLLGYFPAIAVQLDTTNRDSSCQTIRKSMKEAYYSQ
VDMLRRGLPRRVVQSEYVYAANYYAAYSSYFRNNDLNSTCVWTNLWYGLF
DYQDRAKWALDYLNKMRLWKPEINFLNFTQYPSLPDLSSSEITHIDALWH
NIDHRLKSTPRGGYVFEDFVFPNNVDVLYDPGKDLACDEYYKFGPLNSNN
SLPATKVFTVLGMASIKLFRDHGKKSSIEQMLKHFAGYAFDGVRCTGTER
EVLKIPSSLLGSYSRNLGFIFASCSKNPLASFSVEAFESVFADELSSLTS
YNSWGHIEYAKLVGRYSIPAIVNSVDTILDSHNFNALTSYGSSSSSGSDS
GSSSDDDHEMEADDRFLVAARQGSCSSGYVWLTRENPVSNSLEHCCAAVC
DIFALLSTTVDPYPHEECCYRCNEDHGCPSGLTEADVFDNDNTFIIVPEY
GEQSQQTVTMVDI*

mRNA from alignment at tig00000016_pilon:173043..174434+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10235.t1 ID=Ggra10235.t1|Name=Ggra10235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000016_pilon:173043..174434+ (Gracilaria gracilis GNS1m male)
ATGAAGTGGTTGACTTTCTTCCTCTCGGTTCTTACGGCCGCACTCCTTCT
TGGATATTTTCCGGCGATTGCAGTGCAACTTGATACAACTAACCGAGATT
CTTCATGCCAGACGATACGTAAATCAATGAAGGAGGCTTACTACTCACAG
GTGGATATGCTTCGTCGCGGTTTACCGAGACGTGTGGTGCAATCGGAATA
CGTCTATGCTGCGAATTATTACGCTGCGTATAGTTCCTACTTCAGGAATA
ACGATCTAAACTCCACGTGCGTCTGGACAAATCTTTGGTATGGTCTCTTC
GACTACCAAGATAGAGCGAAGTGGGCGTTGGATTATCTAAATAAGATGAG
GTTATGGAAACCGGAAATCAACTTTCTCAACTTCACCCAGTATCCATCTC
TGCCAGACCTGAGTTCCAGTGAAATAACCCACATCGATGCCTTATGGCAT
AATATTGACCACCGCCTGAAAAGCACACCGCGAGGAGGTTATGTGTTCGA
AGACTTTGTGTTTCCGAACAATGTGGATGTATTGTACGATCCTGGGAAGG
ATCTAGCATGTGACGAGTACTACAAGTTTGGCCCCTTGAATAGCAACAAT
TCTCTGCCCGCCACCAAGGTCTTTACTGTATTAGGGATGGCGTCTATTAA
GCTGTTTCGTGACCATGGGAAAAAGTCTTCTATTGAACAAATGTTGAAGC
ATTTCGCGGGATATGCTTTCGACGGTGTTCGTTGTACTGGGACCGAAAGA
GAAGTTCTCAAGATCCCATCCAGTTTATTGGGCTCGTATTCTAGAAACTT
GGGATTCATTTTTGCATCATGTTCGAAGAATCCGTTAGCGTCTTTTTCAG
TCGAGGCATTTGAAAGCGTGTTTGCGGATGAATTAAGCTCACTAACTTCT
TACAACTCATGGGGACACATTGAATACGCAAAGCTCGTCGGAAGATACTC
GATTCCTGCGATAGTGAATTCAGTTGACACAATTCTTGACTCACACAATT
TTAATGCTCTAACGTCATATggttcgagttcgagctctggttcggattcg
ggctcaagctcggACGACGACCACGAAATGGAAGCCGACGACCGTTTTCT
TGTTGCTGCACGTCAAGGTAGTTGTAGTTCTGGGTATGTGTGGCTTACTC
GAGAGAATCCAGTCTCAAATTCTTTGGAGCACTGCTGCGCAGCCGTTTGT
GATATCTTCGCTCTGTTGTCAACCACAGTTGATCCCTACCCGCACGAAGA
ATGTTGTTATCGATGCAATGAGGATCACGGCTGTCCAAGTGGCTTGACCG
AGGCCGATGTTTTTGACAATGACAATACGTTCATCATTGTACCTGAATAT
GGGGAACAATCCCAACAGACGGTTACCATGGTCGACATCTAG

Coding sequence (CDS) from alignment at tig00000016_pilon:173043..174434+

>Ggra10235.t1 ID=Ggra10235.t1|Name=Ggra10235.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1392bp|location=Sequence derived from alignment at tig00000016_pilon:173043..174434+ (Gracilaria gracilis GNS1m male)
ATGAAGTGGTTGACTTTCTTCCTCTCGGTTCTTACGGCCGCACTCCTTCT
TGGATATTTTCCGGCGATTGCAGTGCAACTTGATACAACTAACCGAGATT
CTTCATGCCAGACGATACGTAAATCAATGAAGGAGGCTTACTACTCACAG
GTGGATATGCTTCGTCGCGGTTTACCGAGACGTGTGGTGCAATCGGAATA
CGTCTATGCTGCGAATTATTACGCTGCGTATAGTTCCTACTTCAGGAATA
ACGATCTAAACTCCACGTGCGTCTGGACAAATCTTTGGTATGGTCTCTTC
GACTACCAAGATAGAGCGAAGTGGGCGTTGGATTATCTAAATAAGATGAG
GTTATGGAAACCGGAAATCAACTTTCTCAACTTCACCCAGTATCCATCTC
TGCCAGACCTGAGTTCCAGTGAAATAACCCACATCGATGCCTTATGGCAT
AATATTGACCACCGCCTGAAAAGCACACCGCGAGGAGGTTATGTGTTCGA
AGACTTTGTGTTTCCGAACAATGTGGATGTATTGTACGATCCTGGGAAGG
ATCTAGCATGTGACGAGTACTACAAGTTTGGCCCCTTGAATAGCAACAAT
TCTCTGCCCGCCACCAAGGTCTTTACTGTATTAGGGATGGCGTCTATTAA
GCTGTTTCGTGACCATGGGAAAAAGTCTTCTATTGAACAAATGTTGAAGC
ATTTCGCGGGATATGCTTTCGACGGTGTTCGTTGTACTGGGACCGAAAGA
GAAGTTCTCAAGATCCCATCCAGTTTATTGGGCTCGTATTCTAGAAACTT
GGGATTCATTTTTGCATCATGTTCGAAGAATCCGTTAGCGTCTTTTTCAG
TCGAGGCATTTGAAAGCGTGTTTGCGGATGAATTAAGCTCACTAACTTCT
TACAACTCATGGGGACACATTGAATACGCAAAGCTCGTCGGAAGATACTC
GATTCCTGCGATAGTGAATTCAGTTGACACAATTCTTGACTCACACAATT
TTAATGCTCTAACGTCATATggttcgagttcgagctctggttcggattcg
ggctcaagctcggACGACGACCACGAAATGGAAGCCGACGACCGTTTTCT
TGTTGCTGCACGTCAAGGTAGTTGTAGTTCTGGGTATGTGTGGCTTACTC
GAGAGAATCCAGTCTCAAATTCTTTGGAGCACTGCTGCGCAGCCGTTTGT
GATATCTTCGCTCTGTTGTCAACCACAGTTGATCCCTACCCGCACGAAGA
ATGTTGTTATCGATGCAATGAGGATCACGGCTGTCCAAGTGGCTTGACCG
AGGCCGATGTTTTTGACAATGACAATACGTTCATCATTGTACCTGAATAT
GGGGAACAATCCCAACAGACGGTTACCATGGTCGACATCTAG