Ggra10234.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10234.t1
Unique NameGgra10234.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:170713..171453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3649.evm.model.supercontig_77.83
PFAMsLactamase_B
Max annot lvl35493|Streptophyta
KEGG rclassRC02313
KEGG koko:K17725
KEGG ReactionR08678
KEGG Pathwayko00920,map00920
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009960,GO:0010154,GO:0016491,GO:0016701,GO:0016702,GO:0016787,GO:0016788,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050313,GO:0050896,GO:0051213,GO:0055114,GO:0061458
Evalue7.1e-95
EggNOG OGsCOG0491@1|root,KOG0814@2759|Eukaryota,37MVP@33090|Viridiplantae,3GDGT@35493|Streptophyta,3HS4U@3699|Brassicales
EC1.13.11.18
DescriptionMetallo-beta-lactamase superfamily
COG categoryS
BRITEko00000,ko00001,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10234Ggra10234Gracilaria gracilis GNS1m malegenetig00000016_pilon 170713..171453 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10234.t1.stop1Ggra10234.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 170713..170715 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10234.t1.CDS1Ggra10234.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 170713..171453 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10234.t1.exon1Ggra10234.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 170713..171453 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10234.t1.start1Ggra10234.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 171451..171453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10234.t1Ggra10234.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 170713..171453 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10234.t1 ID=Ggra10234.t1|Name=Ggra10234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=247bp
MAQSIGFLTFRQLFDRTSCTYTYLLADPETKEAVLIDPVDTLVDRDLRVI
SECGFRLVYALNTHAHADHISGTGLIKRRLPSVKSVLGKASHGKADVLIS
QGDSIKFGSNFTLEVIETPGHTAGCVCYYLSSPDQNTPGAVFTGDTLLIR
GCGRTDFQEGDSDSLFASVREKLFKLPPNTFVYPAHDYRGLTCSTIIEEI
RFNPRLGEQKTLQQFRDIMANLQLAYPKMIDVAVPANLNCGIPPED*
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spliced messenger RNA

>Ggra10234.t1 ID=Ggra10234.t1|Name=Ggra10234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000016_pilon:170713..171453- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAAAGCATAGGATTTCTTACCTTCCGACAGCTTTTTGACCGCAC
GTCATGCACATACACATATCTGCTTGCGGATCCCGAGACCAAGGAGGCAG
TTCTCATCGACCCAGTTGACACTCTGGTGGATAGGGATTTGCGTGTCATA
AGCGAGTGCGGTTTTAGATTGGTATACGCTCTCAATACGCATGCCCACGC
TGACCATATTTCTGGTACTGGCCTCATCAAGAGGAGATTGCCATCCGTCA
AGTCGGTGCTTGGCAAGGCATCACATGGCAAAGCCGATGTCCTCATCAGC
CAAGGTGATTCGATTAAGTTTGGTTCTAACTTCACACTCGAAGTGATTGA
GACCCCTGGCCACACTGCTGGGTGTGTCTGCTACTACTTGTCAAGTCCGG
ATCAGAATACTCCCGGGGCTGTGTTCACTGGGGACACCCTTCTCATCAGG
GGCTGTGGGCGAACTGACTTTCAAGAAGGAGACTCGGATTCTCTGTTTGC
CAGTGTCCGCGAGAAGCTATTCAAGTTGCCCCCCAACACATTCGTATACC
CTGCACATGATTACCGGGGACTAACCTGTTCGACGATAATAGAAGAAATA
CGTTTCAATCCACGTTTAGGCGAGCAAAAGACTCTGCAGCAGTTTCGCGA
CATTATGGCAAACTTGCAACTCGCTTACCCGAAGATGATTGACGTTGCTG
TACCAGCAAACCTGAATTGCGGTATTCCTCCTGAAGATTGA
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protein sequence of Ggra10234.t1

>Ggra10234.t1 ID=Ggra10234.t1|Name=Ggra10234.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=247bp
MAQSIGFLTFRQLFDRTSCTYTYLLADPETKEAVLIDPVDTLVDRDLRVI
SECGFRLVYALNTHAHADHISGTGLIKRRLPSVKSVLGKASHGKADVLIS
QGDSIKFGSNFTLEVIETPGHTAGCVCYYLSSPDQNTPGAVFTGDTLLIR
GCGRTDFQEGDSDSLFASVREKLFKLPPNTFVYPAHDYRGLTCSTIIEEI
RFNPRLGEQKTLQQFRDIMANLQLAYPKMIDVAVPANLNCGIPPED*
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mRNA from alignment at tig00000016_pilon:170713..171453-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10234.t1 ID=Ggra10234.t1|Name=Ggra10234.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000016_pilon:170713..171453- (Gracilaria gracilis GNS1m male)
ATGGCTCAAAGCATAGGATTTCTTACCTTCCGACAGCTTTTTGACCGCAC
GTCATGCACATACACATATCTGCTTGCGGATCCCGAGACCAAGGAGGCAG
TTCTCATCGACCCAGTTGACACTCTGGTGGATAGGGATTTGCGTGTCATA
AGCGAGTGCGGTTTTAGATTGGTATACGCTCTCAATACGCATGCCCACGC
TGACCATATTTCTGGTACTGGCCTCATCAAGAGGAGATTGCCATCCGTCA
AGTCGGTGCTTGGCAAGGCATCACATGGCAAAGCCGATGTCCTCATCAGC
CAAGGTGATTCGATTAAGTTTGGTTCTAACTTCACACTCGAAGTGATTGA
GACCCCTGGCCACACTGCTGGGTGTGTCTGCTACTACTTGTCAAGTCCGG
ATCAGAATACTCCCGGGGCTGTGTTCACTGGGGACACCCTTCTCATCAGG
GGCTGTGGGCGAACTGACTTTCAAGAAGGAGACTCGGATTCTCTGTTTGC
CAGTGTCCGCGAGAAGCTATTCAAGTTGCCCCCCAACACATTCGTATACC
CTGCACATGATTACCGGGGACTAACCTGTTCGACGATAATAGAAGAAATA
CGTTTCAATCCACGTTTAGGCGAGCAAAAGACTCTGCAGCAGTTTCGCGA
CATTATGGCAAACTTGCAACTCGCTTACCCGAAGATGATTGACGTTGCTG
TACCAGCAAACCTGAATTGCGGTATTCCTCCTGAAGATTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:170713..171453-

>Ggra10234.t1 ID=Ggra10234.t1|Name=Ggra10234.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000016_pilon:170713..171453- (Gracilaria gracilis GNS1m male)
ATGGCTCAAAGCATAGGATTTCTTACCTTCCGACAGCTTTTTGACCGCAC
GTCATGCACATACACATATCTGCTTGCGGATCCCGAGACCAAGGAGGCAG
TTCTCATCGACCCAGTTGACACTCTGGTGGATAGGGATTTGCGTGTCATA
AGCGAGTGCGGTTTTAGATTGGTATACGCTCTCAATACGCATGCCCACGC
TGACCATATTTCTGGTACTGGCCTCATCAAGAGGAGATTGCCATCCGTCA
AGTCGGTGCTTGGCAAGGCATCACATGGCAAAGCCGATGTCCTCATCAGC
CAAGGTGATTCGATTAAGTTTGGTTCTAACTTCACACTCGAAGTGATTGA
GACCCCTGGCCACACTGCTGGGTGTGTCTGCTACTACTTGTCAAGTCCGG
ATCAGAATACTCCCGGGGCTGTGTTCACTGGGGACACCCTTCTCATCAGG
GGCTGTGGGCGAACTGACTTTCAAGAAGGAGACTCGGATTCTCTGTTTGC
CAGTGTCCGCGAGAAGCTATTCAAGTTGCCCCCCAACACATTCGTATACC
CTGCACATGATTACCGGGGACTAACCTGTTCGACGATAATAGAAGAAATA
CGTTTCAATCCACGTTTAGGCGAGCAAAAGACTCTGCAGCAGTTTCGCGA
CATTATGGCAAACTTGCAACTCGCTTACCCGAAGATGATTGACGTTGCTG
TACCAGCAAACCTGAATTGCGGTATTCCTCCTGAAGATTGA
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