Ggra10233.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10233.t1
Unique NameGgra10233.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:168465..169082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T014308
PFAMsAcetyltransf_1
Max annot lvl121069|Pythiales
Evalue1.71e-05
EggNOG OGsCOG0456@1|root,KOG3139@2759|Eukaryota,1MI35@121069|Pythiales
DescriptionAcetyltransferase (GNAT) domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10233Ggra10233Gracilaria gracilis GNS1m malegenetig00000016_pilon 168465..169082 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10233.t1.start1Ggra10233.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 168465..168467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10233.t1.CDS1Ggra10233.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 168465..169082 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10233.t1.exon1Ggra10233.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 168465..169082 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10233.t1.stop1Ggra10233.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 169080..169082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10233.t1Ggra10233.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 168465..169082 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10233.t1 ID=Ggra10233.t1|Name=Ggra10233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=206bp
MNLVDKNSLETSSLLSFSPDEPEMMVNIREYNSRLREQVWSLFENGMKQN
SEEATESLTRRRIAILLKIAEPQFNDLDDFLCAKNGGKLFVASDVHGKVV
GMLAIKRTDKDIETKSAELTRISVAREWRRKGLCRALVNHASNYVVKNFC
TTRLYLITLSSVTTPMKTYAKLGFKHAGGHDIDPVDNSPQLVEFERYIVD
YSDGK*
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spliced messenger RNA

>Ggra10233.t1 ID=Ggra10233.t1|Name=Ggra10233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000016_pilon:168465..169082+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTCGTAGATAAAAACTCGTTGGAAACGTCATCATTGCTGAGTTT
CTCTCCAGATGAACCGGAGATGATGGTAAATATACGAGAATACAACAGCA
GGCTGCGAGAACAAGTCTGGAGTTTGTTTGAAAATGGAATGAAACAGAAC
AGCGAGGAGGCAACCGAAAGCCTTACCCGTCGAAGAATAGCAATTCTGCT
AAAGATTGCAGAACCCCAATTCAATGACCTGGATGATTTTCTGTGTGCCA
AGAACGGGGGGAAACTCTTTGTTGCTTCAGATGTTCATGGAAAAGTTGTT
GGAATGCTTGCGATAAAGAGGACTGATAAAGATATTGAAACGAAATCCGC
TGAGCTTACGAGAATATCTGTCGCAAGAGAGTGGCGAAGAAAAGGGTTGT
GCCGGGCACTCGTTAATCATGCCTCCAACTACGTTGTAAAGAACTTCTGC
ACTACAAGACTCTACCTTATAACTTTGAGCTCAGTAACTACACCCATGAA
AACATATGCAAAGCTAGGTTTCAAGCATGCCGGAGGTCACGACATAGACC
CAGTTGACAATTCTCCCCAACTTGTGGAATTCGAGAGATACATTGTTGAC
TACTCTGATGGGAAATAA
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protein sequence of Ggra10233.t1

>Ggra10233.t1 ID=Ggra10233.t1|Name=Ggra10233.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bp
MNLVDKNSLETSSLLSFSPDEPEMMVNIREYNSRLREQVWSLFENGMKQN
SEEATESLTRRRIAILLKIAEPQFNDLDDFLCAKNGGKLFVASDVHGKVV
GMLAIKRTDKDIETKSAELTRISVAREWRRKGLCRALVNHASNYVVKNFC
TTRLYLITLSSVTTPMKTYAKLGFKHAGGHDIDPVDNSPQLVEFERYIVD
YSDGK*
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mRNA from alignment at tig00000016_pilon:168465..169082+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10233.t1 ID=Ggra10233.t1|Name=Ggra10233.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000016_pilon:168465..169082+ (Gracilaria gracilis GNS1m male)
ATGAATCTCGTAGATAAAAACTCGTTGGAAACGTCATCATTGCTGAGTTT
CTCTCCAGATGAACCGGAGATGATGGTAAATATACGAGAATACAACAGCA
GGCTGCGAGAACAAGTCTGGAGTTTGTTTGAAAATGGAATGAAACAGAAC
AGCGAGGAGGCAACCGAAAGCCTTACCCGTCGAAGAATAGCAATTCTGCT
AAAGATTGCAGAACCCCAATTCAATGACCTGGATGATTTTCTGTGTGCCA
AGAACGGGGGGAAACTCTTTGTTGCTTCAGATGTTCATGGAAAAGTTGTT
GGAATGCTTGCGATAAAGAGGACTGATAAAGATATTGAAACGAAATCCGC
TGAGCTTACGAGAATATCTGTCGCAAGAGAGTGGCGAAGAAAAGGGTTGT
GCCGGGCACTCGTTAATCATGCCTCCAACTACGTTGTAAAGAACTTCTGC
ACTACAAGACTCTACCTTATAACTTTGAGCTCAGTAACTACACCCATGAA
AACATATGCAAAGCTAGGTTTCAAGCATGCCGGAGGTCACGACATAGACC
CAGTTGACAATTCTCCCCAACTTGTGGAATTCGAGAGATACATTGTTGAC
TACTCTGATGGGAAATAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:168465..169082+

>Ggra10233.t1 ID=Ggra10233.t1|Name=Ggra10233.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=618bp|location=Sequence derived from alignment at tig00000016_pilon:168465..169082+ (Gracilaria gracilis GNS1m male)
ATGAATCTCGTAGATAAAAACTCGTTGGAAACGTCATCATTGCTGAGTTT
CTCTCCAGATGAACCGGAGATGATGGTAAATATACGAGAATACAACAGCA
GGCTGCGAGAACAAGTCTGGAGTTTGTTTGAAAATGGAATGAAACAGAAC
AGCGAGGAGGCAACCGAAAGCCTTACCCGTCGAAGAATAGCAATTCTGCT
AAAGATTGCAGAACCCCAATTCAATGACCTGGATGATTTTCTGTGTGCCA
AGAACGGGGGGAAACTCTTTGTTGCTTCAGATGTTCATGGAAAAGTTGTT
GGAATGCTTGCGATAAAGAGGACTGATAAAGATATTGAAACGAAATCCGC
TGAGCTTACGAGAATATCTGTCGCAAGAGAGTGGCGAAGAAAAGGGTTGT
GCCGGGCACTCGTTAATCATGCCTCCAACTACGTTGTAAAGAACTTCTGC
ACTACAAGACTCTACCTTATAACTTTGAGCTCAGTAACTACACCCATGAA
AACATATGCAAAGCTAGGTTTCAAGCATGCCGGAGGTCACGACATAGACC
CAGTTGACAATTCTCCCCAACTTGTGGAATTCGAGAGATACATTGTTGAC
TACTCTGATGGGAAATAA
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