Ggra10232.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10232.t1
Unique Name	Ggra10232.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	375

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:166578..167702 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706368.1
PFAMs	GFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl	2759\|Eukaryota
Evalue	1.29e-117
EggNOG OGs	COG0673@1\|root,KOG2741@2759\|Eukaryota
Description	D-xylose 1-dehydrogenase (NADP ) activity
COG category	V

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10232	Ggra10232	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 166578..167702 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10232.t1.start1	Ggra10232.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 166578..166580 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10232.t1.CDS1	Ggra10232.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 166578..167702 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10232.t1.exon1	Ggra10232.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 166578..167702 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10232.t1.stop1	Ggra10232.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 167700..167702 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10232.t1	Ggra10232.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 166578..167702 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:166578..167702+
coding sequence from alignment at tig00000016_pilon:166578..167702+

mRNA sequence

>Ggra10232.t1 ID=Ggra10232.t1|Name=Ggra10232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp
MVDLSTVAAEFASAKSALTIDSSVDDSNTIGIGIIGCGRIGQCHARSICT
SIPNAKLVCVSDVFESAALKLAKTYQVPMACTDPLDLINNPAVQAVIVCS
PTDTHADIIKAAAAAGKHIFCEKPVDKNLQIITELEQVLAKYPQVKFFLG
FQRRFDKHFRHAKTVADSGAIGKPIKLHLTSRDPAPPPVGYLKQSGGLFL
DMSSHDFDMARFLTASNVVSISAVGIADNPEIGAIGDLDHTLVTATFENG
CIATIDNSRASALGYDQRAEFFGTKGSVNVGNVHPHTCDSTDKDGYHSDS
PLNFFMERYADAYVEEMKAFVDVVVNDTDVPCGIEDGRLTVLYAAMANLS
IKEKRTVLISEFDKSGEGDVQARY*

spliced messenger RNA

>Ggra10232.t1 ID=Ggra10232.t1|Name=Ggra10232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000016_pilon:166578..167702+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGACCTTTCCACTGTGGCTGCTGAGTTTGCGTCCGCAAAGTCTGC
GCTTACCATTGACAGCTCTGTCGATGATTCCAACACCATCGGTATTGGAA
TCATTGGATGTGGTCGTATTGGACAGTGTCACGCCCGTAGCATCTGTACC
AGCATCCCCAATGCCAAGCTTGTCTGCGTATCCGACGTATTTGAATCGGC
TGCCCTCAAACTAGCGAAGACCTATCAAGTGCCGATGGCCTGCACCGATC
CGCTCGATCTCATCAACAACCCCGCCGTACAGGCCGTCATTGTCTGTTCC
CCCACCGATACTCACGCTGACATCATCAAGGCTGCCGCTGCTGCTGGCAA
GCACATCTTCTGTGAAAAACCTGTCGACAAGAATCTGCAGATTATTACAG
AGCTTGAACAAGTTCTTGCCAAATACCCTCAAGTCAAGTTCTTCCTTGGC
TTCCAGCGCAGATTTGACAAACACTTCAGGCATGCCAAGACTGTTGCTGA
CTCTGGTGCTATTGGAAAGCCCATTAAGCTGCATCTTACTTCGAGGGATC
CCGCCCCGCCACCAGTCGGATATCTCAAGCAGTCTGGCGGACTCTTTCTT
GATATGTCCAGCCATGACTTTGATATGGCTCGCTTTTTGACTGCTTCGAA
TGTGGTTTCCATTTCGGCCGTTGGAATTGCTGATAATCCTGAGATTGGCG
CCATTGGTGACTTGGACCACACCCTCGTCACTGCCACTTTCGAGAATGGA
TGTATTGCTACAATCGATAATTCTCGTGCTTCCGCTCTCGGATACGATCA
GCGTGCCGAGTTCTTTGGAACCAAGGGTAGTGTCAACGTTGGCAATGTGC
ATCCACATACTTGTGATTCTACTGATAAGGATGGCTATCATTCTGACAGC
CCGCTCAACTTTTTCATGGAAAGGTATGCGGATGCGTATGTGGAGGAGAT
GAAGGCCTTTGTTGATGTTGTTGTTAACGATACAGATGTTCCATGCGGCA
TCGAGGACGGAAGGTTAACTGTTCTTTATGCAGCCATGGCTAACTTGAGC
ATTAAGGAGAAGCGAACCGTGCTTATTAGCGAGTTTGACAAGTCGGGTGA
AGGTGATGTACAGGCCCGTTACTAG

protein sequence of Ggra10232.t1

>Ggra10232.t1 ID=Ggra10232.t1|Name=Ggra10232.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=375bp
MVDLSTVAAEFASAKSALTIDSSVDDSNTIGIGIIGCGRIGQCHARSICT
SIPNAKLVCVSDVFESAALKLAKTYQVPMACTDPLDLINNPAVQAVIVCS
PTDTHADIIKAAAAAGKHIFCEKPVDKNLQIITELEQVLAKYPQVKFFLG
FQRRFDKHFRHAKTVADSGAIGKPIKLHLTSRDPAPPPVGYLKQSGGLFL
DMSSHDFDMARFLTASNVVSISAVGIADNPEIGAIGDLDHTLVTATFENG
CIATIDNSRASALGYDQRAEFFGTKGSVNVGNVHPHTCDSTDKDGYHSDS
PLNFFMERYADAYVEEMKAFVDVVVNDTDVPCGIEDGRLTVLYAAMANLS
IKEKRTVLISEFDKSGEGDVQARY*

mRNA from alignment at tig00000016_pilon:166578..167702+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10232.t1 ID=Ggra10232.t1|Name=Ggra10232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000016_pilon:166578..167702+ (Gracilaria gracilis GNS1m male)
ATGGTCGACCTTTCCACTGTGGCTGCTGAGTTTGCGTCCGCAAAGTCTGC
GCTTACCATTGACAGCTCTGTCGATGATTCCAACACCATCGGTATTGGAA
TCATTGGATGTGGTCGTATTGGACAGTGTCACGCCCGTAGCATCTGTACC
AGCATCCCCAATGCCAAGCTTGTCTGCGTATCCGACGTATTTGAATCGGC
TGCCCTCAAACTAGCGAAGACCTATCAAGTGCCGATGGCCTGCACCGATC
CGCTCGATCTCATCAACAACCCCGCCGTACAGGCCGTCATTGTCTGTTCC
CCCACCGATACTCACGCTGACATCATCAAGGCTGCCGCTGCTGCTGGCAA
GCACATCTTCTGTGAAAAACCTGTCGACAAGAATCTGCAGATTATTACAG
AGCTTGAACAAGTTCTTGCCAAATACCCTCAAGTCAAGTTCTTCCTTGGC
TTCCAGCGCAGATTTGACAAACACTTCAGGCATGCCAAGACTGTTGCTGA
CTCTGGTGCTATTGGAAAGCCCATTAAGCTGCATCTTACTTCGAGGGATC
CCGCCCCGCCACCAGTCGGATATCTCAAGCAGTCTGGCGGACTCTTTCTT
GATATGTCCAGCCATGACTTTGATATGGCTCGCTTTTTGACTGCTTCGAA
TGTGGTTTCCATTTCGGCCGTTGGAATTGCTGATAATCCTGAGATTGGCG
CCATTGGTGACTTGGACCACACCCTCGTCACTGCCACTTTCGAGAATGGA
TGTATTGCTACAATCGATAATTCTCGTGCTTCCGCTCTCGGATACGATCA
GCGTGCCGAGTTCTTTGGAACCAAGGGTAGTGTCAACGTTGGCAATGTGC
ATCCACATACTTGTGATTCTACTGATAAGGATGGCTATCATTCTGACAGC
CCGCTCAACTTTTTCATGGAAAGGTATGCGGATGCGTATGTGGAGGAGAT
GAAGGCCTTTGTTGATGTTGTTGTTAACGATACAGATGTTCCATGCGGCA
TCGAGGACGGAAGGTTAACTGTTCTTTATGCAGCCATGGCTAACTTGAGC
ATTAAGGAGAAGCGAACCGTGCTTATTAGCGAGTTTGACAAGTCGGGTGA
AGGTGATGTACAGGCCCGTTACTAG

Coding sequence (CDS) from alignment at tig00000016_pilon:166578..167702+

>Ggra10232.t1 ID=Ggra10232.t1|Name=Ggra10232.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1125bp|location=Sequence derived from alignment at tig00000016_pilon:166578..167702+ (Gracilaria gracilis GNS1m male)
ATGGTCGACCTTTCCACTGTGGCTGCTGAGTTTGCGTCCGCAAAGTCTGC
GCTTACCATTGACAGCTCTGTCGATGATTCCAACACCATCGGTATTGGAA
TCATTGGATGTGGTCGTATTGGACAGTGTCACGCCCGTAGCATCTGTACC
AGCATCCCCAATGCCAAGCTTGTCTGCGTATCCGACGTATTTGAATCGGC
TGCCCTCAAACTAGCGAAGACCTATCAAGTGCCGATGGCCTGCACCGATC
CGCTCGATCTCATCAACAACCCCGCCGTACAGGCCGTCATTGTCTGTTCC
CCCACCGATACTCACGCTGACATCATCAAGGCTGCCGCTGCTGCTGGCAA
GCACATCTTCTGTGAAAAACCTGTCGACAAGAATCTGCAGATTATTACAG
AGCTTGAACAAGTTCTTGCCAAATACCCTCAAGTCAAGTTCTTCCTTGGC
TTCCAGCGCAGATTTGACAAACACTTCAGGCATGCCAAGACTGTTGCTGA
CTCTGGTGCTATTGGAAAGCCCATTAAGCTGCATCTTACTTCGAGGGATC
CCGCCCCGCCACCAGTCGGATATCTCAAGCAGTCTGGCGGACTCTTTCTT
GATATGTCCAGCCATGACTTTGATATGGCTCGCTTTTTGACTGCTTCGAA
TGTGGTTTCCATTTCGGCCGTTGGAATTGCTGATAATCCTGAGATTGGCG
CCATTGGTGACTTGGACCACACCCTCGTCACTGCCACTTTCGAGAATGGA
TGTATTGCTACAATCGATAATTCTCGTGCTTCCGCTCTCGGATACGATCA
GCGTGCCGAGTTCTTTGGAACCAAGGGTAGTGTCAACGTTGGCAATGTGC
ATCCACATACTTGTGATTCTACTGATAAGGATGGCTATCATTCTGACAGC
CCGCTCAACTTTTTCATGGAAAGGTATGCGGATGCGTATGTGGAGGAGAT
GAAGGCCTTTGTTGATGTTGTTGTTAACGATACAGATGTTCCATGCGGCA
TCGAGGACGGAAGGTTAACTGTTCTTTATGCAGCCATGGCTAACTTGAGC
ATTAAGGAGAAGCGAACCGTGCTTATTAGCGAGTTTGACAAGTCGGGTGA
AGGTGATGTACAGGCCCGTTACTAG