Ggra10228.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10228.t1
Unique NameGgra10228.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:159840..160346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog225400.XP_006777352.1
Preferred nameLSM10
PFAMsLSM
Max annot lvl33208|Metazoa
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005683,GO:0007346,GO:0008150,GO:0010564,GO:0015030,GO:0016604,GO:0017069,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0071208,GO:0071209,GO:0090068,GO:0097159,GO:0120114,GO:1900087,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990904,GO:2000045
Evalue3.38e-11
EggNOG OGsCOG1958@1|root,KOG3428@2759|Eukaryota,3A8FY@33154|Opisthokonta,3BTXX@33208|Metazoa,3DAQD@33213|Bilateria,48R38@7711|Chordata,49MP8@7742|Vertebrata,3JPZ1@40674|Mammalia,4M5EX@9397|Chiroptera
DescriptionLSM domain
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10228Ggra10228Gracilaria gracilis GNS1m malegenetig00000016_pilon 159840..160346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10228.t1Ggra10228.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 159840..160346 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10228.t1.stop1Ggra10228.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 159840..159842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10228.t1.CDS1Ggra10228.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 159840..159899 -
Ggra10228.t1.CDS2Ggra10228.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 159968..160124 -
Ggra10228.t1.CDS3Ggra10228.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 160216..160346 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10228.t1.exon1Ggra10228.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 159840..159899 -
Ggra10228.t1.exon2Ggra10228.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 159968..160124 -
Ggra10228.t1.exon3Ggra10228.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 160216..160346 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10228.t1.intron1Ggra10228.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 159900..159967 -
Ggra10228.t1.intron2Ggra10228.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 160125..160215 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10228.t1.start1Ggra10228.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 160344..160346 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10228.t1 ID=Ggra10228.t1|Name=Ggra10228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=116bp
MSRKNEATSLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNA
SYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKRL
EAVKYASSGGKRRKR*
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spliced messenger RNA

>Ggra10228.t1 ID=Ggra10228.t1|Name=Ggra10228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00000016_pilon:159840..160346- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGGAAGAATGAAGCCACCAGCCTCGACTTTCTTCTCCAGGCACT
GTGCGGTCGGAAGCTGCACCTGGAGCTTCGAAACAACGTCCATGTTAAGG
GGATGCTGGACTCTGTGGATGCAAACATGAATGTGACAATATCAAACGCT
TCGTATACAACACCGACCAGACAACATGCCAAAACGACCGCCCCTCTTTC
TTTTGATCTTGTCTATATTGCTGCGAGACACATAACCTTCGTTCACATTC
CGGAGGATGTGAACGTTTGGGAAACTATGGAAATTCATACAAAACGCCTG
GAAGCTGTAAAGTATGCCAGTTCGGGGGGGAAACGGAGAAAAAGATAG
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protein sequence of Ggra10228.t1

>Ggra10228.t1 ID=Ggra10228.t1|Name=Ggra10228.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=116bp
MSRKNEATSLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNA
SYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKRL
EAVKYASSGGKRRKR*
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mRNA from alignment at tig00000016_pilon:159840..160346-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10228.t1 ID=Ggra10228.t1|Name=Ggra10228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000016_pilon:159840..160346- (Gracilaria gracilis GNS1m male)
ATGAGCAGGAAGAATGAAGCCACCAGCCTCGACTTTCTTCTCCAGGCACT
GTGCGGTCGGAAGCTGCACCTGGAGCTTCGAAACAACGTCCATGTTAAGG
GGATGCTGGACTCTGTGGATGCAAACATGAAGTAAAGTTCTCGTTCTTGT
TCCAAAACAGTTTTAATGGTTGCTCGAGTCAATTATTAAAGCTAACACGT
GCTCCTCATTTCCTCGTGATAGTGTGACAATATCAAACGCTTCGTATACA
ACACCGACCAGACAACATGCCAAAACGACCGCCCCTCTTTCTTTTGATCT
TGTCTATATTGCTGCGAGACACATAACCTTCGTTCACATTCCGGAGGATG
TGAACGTTTGGGAAACTATGGAAATTCATGTAAGTTCTTTGCAAACGTTA
TGACAAGGATGGTATCGGCATTGATCTAACCAAGTCAAAACTTGTAGACA
AAACGCCTGGAAGCTGTAAAGTATGCCAGTTCGGGGGGGAAACGGAGAAA
AAGATAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:159840..160346-

>Ggra10228.t1 ID=Ggra10228.t1|Name=Ggra10228.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00000016_pilon:159840..160346- (Gracilaria gracilis GNS1m male)
ATGAGCAGGAAGAATGAAGCCACCAGCCTCGACTTTCTTCTCCAGGCACT
GTGCGGTCGGAAGCTGCACCTGGAGCTTCGAAACAACGTCCATGTTAAGG
GGATGCTGGACTCTGTGGATGCAAACATGAATGTGACAATATCAAACGCT
TCGTATACAACACCGACCAGACAACATGCCAAAACGACCGCCCCTCTTTC
TTTTGATCTTGTCTATATTGCTGCGAGACACATAACCTTCGTTCACATTC
CGGAGGATGTGAACGTTTGGGAAACTATGGAAATTCATACAAAACGCCTG
GAAGCTGTAAAGTATGCCAGTTCGGGGGGGAAACGGAGAAAAAGATAG
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