Ggra10226.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10226.t1
Unique Name	Ggra10226.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	823

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:155797..158265 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	243277.VC_1147
PFAMs	Fe-ADH
Max annot lvl	135623\|Vibrionales
Evalue	3.05e-06
EggNOG OGs	COG1454@1\|root,COG1454@2\|Bacteria,1MVPH@1224\|Proteobacteria,1S1W6@1236\|Gammaproteobacteria,1XTZE@135623\|Vibrionales
Description	alcohol dehydrogenase
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10226	Ggra10226	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 155797..158265 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10226.t1.stop1	Ggra10226.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 155797..155799 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10226.t1.CDS1	Ggra10226.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 155797..158265 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10226.t1.exon1	Ggra10226.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 155797..158265 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10226.t1.start1	Ggra10226.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 158263..158265 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10226.t1	Ggra10226.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 155797..158265 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:155797..158265-
coding sequence from alignment at tig00000016_pilon:155797..158265-

mRNA sequence

>Ggra10226.t1 ID=Ggra10226.t1|Name=Ggra10226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=823bp
MSNFGELGQDSLRTLGVNSEAVTCFAQSLTPFKQNRGISEASRCRQTFQN
YGYRNLTRLAKLRRRRAVLYMSSGEKAIVNETQYNDQQNFSGVLPQGAYT
VILRVKMKEKLNPTEQKIILAEYARNSCAEQGVIRCDVLFRVNKLGIAKD
DFYEIWISFADAQAYTEHERTSHAAKLRLCLEDPYGGDSSKLLTKLAYKL
SLLKLVRPEVTDWVSAFDFETQNAPPITEKIGGSLKVKDDPDQIRRSLDM
LISSVGLEDVVVLVATASAFSIESTRALRRECEEYLTDLDRSAGIVRTGV
LVDKNDPYRIVIMTVHDSSDKAGACFDMELASDYVTDDGWVVERCHAVFP
DKVGWEKKLSEEDQKRFLGDVVEERFEKLLEGPGALMKYERGEADDSKMR
LIQGAGSFEMLKQCIGSMTQIAAGTIKILLIGGWNQSRLHPLLIQLEFDK
YKDPFEIQWRFGIPVPSSEIRTELLKNALMDVADFGPDVIIGYGGGTVMD
MTKLLGRLGNASESDLKSFLNTIDGAADADAGAIGLPITTRPLPVVLIPA
TVGSGAEMTEWCIVAGQRKDGSIRRLPLYFYDQPGTMRLVTEKTAIQESR
LVSPRRFQGLHASQGALELVCLAIDTLLGLQEHLDNQSAKFAIRGLRQAY
RVVMDARREPNSGSGHSRDPLVEAKTLIGLASDGLGRPGICVRLSLAVLD
SLVDGRLPTAFREVLTRVAIATVEECLESRPEVGRRTFREILKATRHNYR
RELVTDMLRKAEDCDVSLLPMVGMVRRNITNVAERVSKYLESETLSPIES
YLKQADVLERILWRALGQEYEL*

spliced messenger RNA

>Ggra10226.t1 ID=Ggra10226.t1|Name=Ggra10226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2469bp|location=Sequence derived from alignment at tig00000016_pilon:155797..158265- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTAATTTTGGAGAGCTCGGACAGGACAGTTTGCGGACTCTCGGAGT
CAATTCTGAAGCTGTCACATGTTTTGCGCAGAGTTTAACACCCTTTAAGC
AAAATAGGGGCATATCAGAAGCTTCCCGATGTCGGCAGACTTTTCAGAAC
TATGGATACCGGAATCTCACCAGATTGGCGAAATTGCGGCGACGTCGAGC
GGTCTTGTACATGTCTTCTGGGGAGAAGGCCATTGTAAACGAGACGCAGT
ACAATGACCAACAGAACTTTAGTGGTGTACTACCCCAGGGGGCATACACT
GTGATTTTGCGAGTGAAGATGAAGGAGAAATTGAATCCCACAGAGCAGAA
AATTATTCTGGCAGAATATGCAAGGAATAGTTGTGCAGAGCAAGGAGTGA
TCCGTTGTGACGTTTTATTCCGAGTGAACAAGCTAGGGATCGCAAAAGAT
GACTTTTACGAGATATGGATTTCATTCGCCGATGCTCAGGCGTATACAGA
ACACGAACGAACTTCTCATGCTGCCAAATTGCGCCTCTGTCTTGAAGACC
CGTACGGAGGTGACAGCTCTAAGCTTCTTACAAAACTTGCCTACAAGCTA
TCTCTTCTAAAACTTGTGAGACCAGAAGTTACGGATTGGGTTTCTGCGTT
TGACTTCGAAACACAGAATGCGCCACCAATAACGGAGAAGATTGGTGGCA
GCCTCAAAGTGAAGGATGATCCTGATCAAATTCGGAGATCCCTGGACATG
TTGATATCCAGCGTGGGACTCGAAGATGTTGTGGTTTTGGTTGCGACTGC
ATCTGCCTTCTCAATAGAGAGCACGCGGGCACTTCGGAGGGAATGTGAGG
AGTACTTAACGGATCTAGACCGGAGTGCTGGGATTGTTCGAACGGGCGTG
CTGGTCGACAAGAACGACCCGTACAGAATTGTAATCATGACCGTGCATGA
CAGCTCAGACAAGGCAGGTGCATGTTTCGATATGGAGCTGGCTTCAGACT
ATGTCACTGATGACGGGTGGGTGGTTGAACGATGTCATGCTGTTTTTCCC
GACAAAGTTGGGTGGGAGAAGAAGCTAAGTGAAGAGGACCAAAAACGGTT
CCTGGGCGACGTGGTTGAAGAGCGTTTTGAGAAACTTCTCGAAGGCCCTG
GAGCCCTAATGAAATACGAACGAGGCGAGGCAGACGATTCAAAAATGAGA
CTCATACAAGGTGCGGGCTCGTTTGAGATGCTCAAGCAGTGTATCGGGTC
TATGACTCAAATAGCAGCTGGTACTATAAAGATTTTACTTATCGGTGGAT
GGAATCAATCACGATTGCACCCTCTTCTCATACAACTTGAGTTCGATAAA
TACAAGGATCCGTTTGAGATACAGTGGCGTTTTGGGATACCAGTCCCTAG
CTCGGAAATCCGAACCGAACTCCTAAAAAATGCGTTGATGGACGTAGCGG
ACTTTGGTCCAGATGTGATTATCGGTTATGGAGGTGGAACTGTGATGGAC
ATGACAAAGCTATTGGGGAGGTTGGGAAATGCATCGGAGAGTGACCTGAA
ATCGTTTTTGAACACTATCGATGGAGCAGCTGATGCTGATGCCGGGGCTA
TCGGGCTTCCCATAACTACACGACCTCTTCCAGTCGTATTGATACCGGCT
ACAGTTGGGAGTGGTGCCGAGATGACCGAATGGTGTATTGTTGCCGGACA
GCGAAAAGACGGTTCCATCCGCCGTCTACCATTGTACTTCTACGACCAGC
CCGGAACAATGCGCCTGGTTACGGAGAAGACTGCCATACAAGAGTCGAGG
TTAGTCAGTCCAAGAAGATTTCAAGGACTTCACGCGTCTCAGGGCGCACT
GGAACTTGTCTGTTTAGCAATTGACACTCTTTTGGGGTTGCAGGAACACC
TTGACAATCAATCGGCGAAATTTGCAATCCGAGGTCTGAGACAAGCATAT
AGAGTGGTGATGGATGCTCGAAGAGAGCCTAACAGTGGCTCAGGACATTC
TCGAGACCCACTCGTTGAAGCGAAGACGCTCATTGGTCTAGCTTCAGATG
GACTTGGTCGTCCTGGGATCTGTGTTCGACTCTCTCTCGCTGTTCTAGAT
TCACTTGTTGACGGAAGGTTACCAACAGCATTTCGAGAGGTTTTGACGCG
TGTGGCAATCGCAACGGTGGAAGAATGTCTAGAAAGCAGACCAGAAGTGG
GGAGGAGAACATTTCGAGAGATACTAAAAGCGACAAGGCATAACTATAGA
AGAGAACTTGTGACGGATATGTTGAGAAAAGCTGAGGATTGTGACGTGAG
TTTGTTGCCAATGGTAGGCATGGTGCGGCGGAACATAACAAACGTGGCAG
AACGGGTATCGAAATATCTGGAAAGCGAAACGCTTAGTCCTATAGAAAGT
TATTTGAAGCAAGCGGATGTACTAGAGCGTATTCTATGGCGGGCACTTGG
ACAAGAATACGAGCTTTAG

protein sequence of Ggra10226.t1

>Ggra10226.t1 ID=Ggra10226.t1|Name=Ggra10226.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=823bp
MSNFGELGQDSLRTLGVNSEAVTCFAQSLTPFKQNRGISEASRCRQTFQN
YGYRNLTRLAKLRRRRAVLYMSSGEKAIVNETQYNDQQNFSGVLPQGAYT
VILRVKMKEKLNPTEQKIILAEYARNSCAEQGVIRCDVLFRVNKLGIAKD
DFYEIWISFADAQAYTEHERTSHAAKLRLCLEDPYGGDSSKLLTKLAYKL
SLLKLVRPEVTDWVSAFDFETQNAPPITEKIGGSLKVKDDPDQIRRSLDM
LISSVGLEDVVVLVATASAFSIESTRALRRECEEYLTDLDRSAGIVRTGV
LVDKNDPYRIVIMTVHDSSDKAGACFDMELASDYVTDDGWVVERCHAVFP
DKVGWEKKLSEEDQKRFLGDVVEERFEKLLEGPGALMKYERGEADDSKMR
LIQGAGSFEMLKQCIGSMTQIAAGTIKILLIGGWNQSRLHPLLIQLEFDK
YKDPFEIQWRFGIPVPSSEIRTELLKNALMDVADFGPDVIIGYGGGTVMD
MTKLLGRLGNASESDLKSFLNTIDGAADADAGAIGLPITTRPLPVVLIPA
TVGSGAEMTEWCIVAGQRKDGSIRRLPLYFYDQPGTMRLVTEKTAIQESR
LVSPRRFQGLHASQGALELVCLAIDTLLGLQEHLDNQSAKFAIRGLRQAY
RVVMDARREPNSGSGHSRDPLVEAKTLIGLASDGLGRPGICVRLSLAVLD
SLVDGRLPTAFREVLTRVAIATVEECLESRPEVGRRTFREILKATRHNYR
RELVTDMLRKAEDCDVSLLPMVGMVRRNITNVAERVSKYLESETLSPIES
YLKQADVLERILWRALGQEYEL*

mRNA from alignment at tig00000016_pilon:155797..158265-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10226.t1 ID=Ggra10226.t1|Name=Ggra10226.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2469bp|location=Sequence derived from alignment at tig00000016_pilon:155797..158265- (Gracilaria gracilis GNS1m male)
ATGAGTAATTTTGGAGAGCTCGGACAGGACAGTTTGCGGACTCTCGGAGT
CAATTCTGAAGCTGTCACATGTTTTGCGCAGAGTTTAACACCCTTTAAGC
AAAATAGGGGCATATCAGAAGCTTCCCGATGTCGGCAGACTTTTCAGAAC
TATGGATACCGGAATCTCACCAGATTGGCGAAATTGCGGCGACGTCGAGC
GGTCTTGTACATGTCTTCTGGGGAGAAGGCCATTGTAAACGAGACGCAGT
ACAATGACCAACAGAACTTTAGTGGTGTACTACCCCAGGGGGCATACACT
GTGATTTTGCGAGTGAAGATGAAGGAGAAATTGAATCCCACAGAGCAGAA
AATTATTCTGGCAGAATATGCAAGGAATAGTTGTGCAGAGCAAGGAGTGA
TCCGTTGTGACGTTTTATTCCGAGTGAACAAGCTAGGGATCGCAAAAGAT
GACTTTTACGAGATATGGATTTCATTCGCCGATGCTCAGGCGTATACAGA
ACACGAACGAACTTCTCATGCTGCCAAATTGCGCCTCTGTCTTGAAGACC
CGTACGGAGGTGACAGCTCTAAGCTTCTTACAAAACTTGCCTACAAGCTA
TCTCTTCTAAAACTTGTGAGACCAGAAGTTACGGATTGGGTTTCTGCGTT
TGACTTCGAAACACAGAATGCGCCACCAATAACGGAGAAGATTGGTGGCA
GCCTCAAAGTGAAGGATGATCCTGATCAAATTCGGAGATCCCTGGACATG
TTGATATCCAGCGTGGGACTCGAAGATGTTGTGGTTTTGGTTGCGACTGC
ATCTGCCTTCTCAATAGAGAGCACGCGGGCACTTCGGAGGGAATGTGAGG
AGTACTTAACGGATCTAGACCGGAGTGCTGGGATTGTTCGAACGGGCGTG
CTGGTCGACAAGAACGACCCGTACAGAATTGTAATCATGACCGTGCATGA
CAGCTCAGACAAGGCAGGTGCATGTTTCGATATGGAGCTGGCTTCAGACT
ATGTCACTGATGACGGGTGGGTGGTTGAACGATGTCATGCTGTTTTTCCC
GACAAAGTTGGGTGGGAGAAGAAGCTAAGTGAAGAGGACCAAAAACGGTT
CCTGGGCGACGTGGTTGAAGAGCGTTTTGAGAAACTTCTCGAAGGCCCTG
GAGCCCTAATGAAATACGAACGAGGCGAGGCAGACGATTCAAAAATGAGA
CTCATACAAGGTGCGGGCTCGTTTGAGATGCTCAAGCAGTGTATCGGGTC
TATGACTCAAATAGCAGCTGGTACTATAAAGATTTTACTTATCGGTGGAT
GGAATCAATCACGATTGCACCCTCTTCTCATACAACTTGAGTTCGATAAA
TACAAGGATCCGTTTGAGATACAGTGGCGTTTTGGGATACCAGTCCCTAG
CTCGGAAATCCGAACCGAACTCCTAAAAAATGCGTTGATGGACGTAGCGG
ACTTTGGTCCAGATGTGATTATCGGTTATGGAGGTGGAACTGTGATGGAC
ATGACAAAGCTATTGGGGAGGTTGGGAAATGCATCGGAGAGTGACCTGAA
ATCGTTTTTGAACACTATCGATGGAGCAGCTGATGCTGATGCCGGGGCTA
TCGGGCTTCCCATAACTACACGACCTCTTCCAGTCGTATTGATACCGGCT
ACAGTTGGGAGTGGTGCCGAGATGACCGAATGGTGTATTGTTGCCGGACA
GCGAAAAGACGGTTCCATCCGCCGTCTACCATTGTACTTCTACGACCAGC
CCGGAACAATGCGCCTGGTTACGGAGAAGACTGCCATACAAGAGTCGAGG
TTAGTCAGTCCAAGAAGATTTCAAGGACTTCACGCGTCTCAGGGCGCACT
GGAACTTGTCTGTTTAGCAATTGACACTCTTTTGGGGTTGCAGGAACACC
TTGACAATCAATCGGCGAAATTTGCAATCCGAGGTCTGAGACAAGCATAT
AGAGTGGTGATGGATGCTCGAAGAGAGCCTAACAGTGGCTCAGGACATTC
TCGAGACCCACTCGTTGAAGCGAAGACGCTCATTGGTCTAGCTTCAGATG
GACTTGGTCGTCCTGGGATCTGTGTTCGACTCTCTCTCGCTGTTCTAGAT
TCACTTGTTGACGGAAGGTTACCAACAGCATTTCGAGAGGTTTTGACGCG
TGTGGCAATCGCAACGGTGGAAGAATGTCTAGAAAGCAGACCAGAAGTGG
GGAGGAGAACATTTCGAGAGATACTAAAAGCGACAAGGCATAACTATAGA
AGAGAACTTGTGACGGATATGTTGAGAAAAGCTGAGGATTGTGACGTGAG
TTTGTTGCCAATGGTAGGCATGGTGCGGCGGAACATAACAAACGTGGCAG
AACGGGTATCGAAATATCTGGAAAGCGAAACGCTTAGTCCTATAGAAAGT
TATTTGAAGCAAGCGGATGTACTAGAGCGTATTCTATGGCGGGCACTTGG
ACAAGAATACGAGCTTTAG

Coding sequence (CDS) from alignment at tig00000016_pilon:155797..158265-

>Ggra10226.t1 ID=Ggra10226.t1|Name=Ggra10226.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2469bp|location=Sequence derived from alignment at tig00000016_pilon:155797..158265- (Gracilaria gracilis GNS1m male)
ATGAGTAATTTTGGAGAGCTCGGACAGGACAGTTTGCGGACTCTCGGAGT
CAATTCTGAAGCTGTCACATGTTTTGCGCAGAGTTTAACACCCTTTAAGC
AAAATAGGGGCATATCAGAAGCTTCCCGATGTCGGCAGACTTTTCAGAAC
TATGGATACCGGAATCTCACCAGATTGGCGAAATTGCGGCGACGTCGAGC
GGTCTTGTACATGTCTTCTGGGGAGAAGGCCATTGTAAACGAGACGCAGT
ACAATGACCAACAGAACTTTAGTGGTGTACTACCCCAGGGGGCATACACT
GTGATTTTGCGAGTGAAGATGAAGGAGAAATTGAATCCCACAGAGCAGAA
AATTATTCTGGCAGAATATGCAAGGAATAGTTGTGCAGAGCAAGGAGTGA
TCCGTTGTGACGTTTTATTCCGAGTGAACAAGCTAGGGATCGCAAAAGAT
GACTTTTACGAGATATGGATTTCATTCGCCGATGCTCAGGCGTATACAGA
ACACGAACGAACTTCTCATGCTGCCAAATTGCGCCTCTGTCTTGAAGACC
CGTACGGAGGTGACAGCTCTAAGCTTCTTACAAAACTTGCCTACAAGCTA
TCTCTTCTAAAACTTGTGAGACCAGAAGTTACGGATTGGGTTTCTGCGTT
TGACTTCGAAACACAGAATGCGCCACCAATAACGGAGAAGATTGGTGGCA
GCCTCAAAGTGAAGGATGATCCTGATCAAATTCGGAGATCCCTGGACATG
TTGATATCCAGCGTGGGACTCGAAGATGTTGTGGTTTTGGTTGCGACTGC
ATCTGCCTTCTCAATAGAGAGCACGCGGGCACTTCGGAGGGAATGTGAGG
AGTACTTAACGGATCTAGACCGGAGTGCTGGGATTGTTCGAACGGGCGTG
CTGGTCGACAAGAACGACCCGTACAGAATTGTAATCATGACCGTGCATGA
CAGCTCAGACAAGGCAGGTGCATGTTTCGATATGGAGCTGGCTTCAGACT
ATGTCACTGATGACGGGTGGGTGGTTGAACGATGTCATGCTGTTTTTCCC
GACAAAGTTGGGTGGGAGAAGAAGCTAAGTGAAGAGGACCAAAAACGGTT
CCTGGGCGACGTGGTTGAAGAGCGTTTTGAGAAACTTCTCGAAGGCCCTG
GAGCCCTAATGAAATACGAACGAGGCGAGGCAGACGATTCAAAAATGAGA
CTCATACAAGGTGCGGGCTCGTTTGAGATGCTCAAGCAGTGTATCGGGTC
TATGACTCAAATAGCAGCTGGTACTATAAAGATTTTACTTATCGGTGGAT
GGAATCAATCACGATTGCACCCTCTTCTCATACAACTTGAGTTCGATAAA
TACAAGGATCCGTTTGAGATACAGTGGCGTTTTGGGATACCAGTCCCTAG
CTCGGAAATCCGAACCGAACTCCTAAAAAATGCGTTGATGGACGTAGCGG
ACTTTGGTCCAGATGTGATTATCGGTTATGGAGGTGGAACTGTGATGGAC
ATGACAAAGCTATTGGGGAGGTTGGGAAATGCATCGGAGAGTGACCTGAA
ATCGTTTTTGAACACTATCGATGGAGCAGCTGATGCTGATGCCGGGGCTA
TCGGGCTTCCCATAACTACACGACCTCTTCCAGTCGTATTGATACCGGCT
ACAGTTGGGAGTGGTGCCGAGATGACCGAATGGTGTATTGTTGCCGGACA
GCGAAAAGACGGTTCCATCCGCCGTCTACCATTGTACTTCTACGACCAGC
CCGGAACAATGCGCCTGGTTACGGAGAAGACTGCCATACAAGAGTCGAGG
TTAGTCAGTCCAAGAAGATTTCAAGGACTTCACGCGTCTCAGGGCGCACT
GGAACTTGTCTGTTTAGCAATTGACACTCTTTTGGGGTTGCAGGAACACC
TTGACAATCAATCGGCGAAATTTGCAATCCGAGGTCTGAGACAAGCATAT
AGAGTGGTGATGGATGCTCGAAGAGAGCCTAACAGTGGCTCAGGACATTC
TCGAGACCCACTCGTTGAAGCGAAGACGCTCATTGGTCTAGCTTCAGATG
GACTTGGTCGTCCTGGGATCTGTGTTCGACTCTCTCTCGCTGTTCTAGAT
TCACTTGTTGACGGAAGGTTACCAACAGCATTTCGAGAGGTTTTGACGCG
TGTGGCAATCGCAACGGTGGAAGAATGTCTAGAAAGCAGACCAGAAGTGG
GGAGGAGAACATTTCGAGAGATACTAAAAGCGACAAGGCATAACTATAGA
AGAGAACTTGTGACGGATATGTTGAGAAAAGCTGAGGATTGTGACGTGAG
TTTGTTGCCAATGGTAGGCATGGTGCGGCGGAACATAACAAACGTGGCAG
AACGGGTATCGAAATATCTGGAAAGCGAAACGCTTAGTCCTATAGAAAGT
TATTTGAAGCAAGCGGATGTACTAGAGCGTATTCTATGGCGGGCACTTGG
ACAAGAATACGAGCTTTAG