Ggra10225.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10225.t1
Unique NameGgra10225.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:154430..155676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD36858
PFAMsMito_carr
Max annot lvl2759|Eukaryota
Evalue8.22e-49
EggNOG OGs28MPG@1|root,2QU7F@2759|Eukaryota
DescriptionMitochondrial carrier protein
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10225Ggra10225Gracilaria gracilis GNS1m malegenetig00000016_pilon 154430..155676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10225.t1Ggra10225.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 154430..155676 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10225.t1.start1Ggra10225.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 154430..154432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10225.t1.CDS1Ggra10225.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 154430..155191 +
Ggra10225.t1.CDS2Ggra10225.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 155271..155337 +
Ggra10225.t1.CDS3Ggra10225.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 155453..155676 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10225.t1.exon1Ggra10225.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 154430..155191 +
Ggra10225.t1.exon2Ggra10225.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 155271..155337 +
Ggra10225.t1.exon3Ggra10225.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 155453..155676 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10225.t1.intron1Ggra10225.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 155192..155270 +
Ggra10225.t1.intron2Ggra10225.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 155338..155452 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10225.t1.stop1Ggra10225.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 155674..155676 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10225.t1 ID=Ggra10225.t1|Name=Ggra10225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp
MYSSAGADASAQIRRPVPMPSLSALKAGMPGAAAAACQTASFMWLSTTAA
FQYRSGATLRQALQLLYAQGGVRRFYSGLAPTVLHVTLCRFGDTTANNMA
LTLAPTDSLPLNTLCASFAAAAWRATLLPLETVRSNMQVRGPDGFSLVVD
RFRNAGFAGLYRGSAASFSAGLVGHFPFFFTVNVVSQAVPLSEDASFLAT
VGRNGGMGFLAAMSADIFTNGFKVLANNKQTCDKGLSYYEVARKIVKRDG
VFSISPVSCEQDSVRLTNPDLHFAPISPACVESTVILNNARLAFSAYSRI
GFRGMSHTFLLCHLQSLSSIVCCLCAGSVDLGQAQVCIVPHNNTRTRLAH
*
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spliced messenger RNA

>Ggra10225.t1 ID=Ggra10225.t1|Name=Ggra10225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000016_pilon:154430..155676+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTCTTCGGCGGGCGCCGACGCGTCTGCCCAGATCCGACGTCCGGT
TCCAATGCCGTCGTTGTCCGCGTTGAAGGCCGGAATGCCTGGCGCTGCTG
CTGCCGCTTGCCAGACTGCTTCGTTCATGTGGCTGTCCACTACCGCCGCG
TTTCAGTACCGCTCCGGGGCTACGCTGCGGCAGGCGCTGCAGCTGCTGTA
CGCGCAGGGAGGTGTGAGACGCTTCTACTCAGGACTGGCTCCCACTGTGC
TGCATGTGACGCTGTGTCGCTTTGGGGATACTACTGCTAATAATATGGCT
CTCACACTTGCGCCCACGGATAGTCTTCCGCTTAACACGCTGTGTGCAAG
CTTTGCGGCCGCCGCTTGGAGGGCCACTCTGTTGCCATTGGAGACTGTGC
GTTCTAACATGCAGGTTAGAGGACCGGACGGTTTCTCGCTCGTTGTCGAT
CGCTTTCGTAATGCCGGCTTTGCGGGCTTGTATCGAGGCAGTGCCGCTAG
CTTCTCTGCGGGCTTGGTTGGGCATTTTCCGTTCTTCTTTACCGTCAACG
TCGTATCTCAAGCGGTTCCACTCTCTGAAGATGCTTCATTTCTTGCCACG
GTTGGCCGAAATGGCGGCATGGGATTTCTGGCTGCTATGTCGGCTGATAT
CTTCACAAACGGATTTAAGGTTTTGGCGAACAACAAGCAGACTTGTGACA
AGGGTCTCTCGTACTATGAAGTGGCCCGCAAGATTGTTAAGAGAGATGGT
GTCTTTTCGATTAGTCCCGTCTCGTGCGAACAAGATTCAGTTCGTCTGAC
CAATCCTGATTTGCACTTCGCCCCCATTTCGCCCGCTTGTGTTGAATCAA
CTGTCATATTGAACAACGCCCGCTTGGCCTTCTCTGCATATTCTCGTATT
GGCTTCCGCGGCATGTCACACACTTTTTTGCTATGCCACCTCCAATCCTT
ATCAAGTATCGTATGCTGTTTGTGTGCCGGGTCTGTCGACCTCGGTCAAG
CACAGGTGTGTATTGTACCGCATAATAACACAAGGACAAGGCTGGCACAT
TGA
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protein sequence of Ggra10225.t1

>Ggra10225.t1 ID=Ggra10225.t1|Name=Ggra10225.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=351bp
MYSSAGADASAQIRRPVPMPSLSALKAGMPGAAAAACQTASFMWLSTTAA
FQYRSGATLRQALQLLYAQGGVRRFYSGLAPTVLHVTLCRFGDTTANNMA
LTLAPTDSLPLNTLCASFAAAAWRATLLPLETVRSNMQVRGPDGFSLVVD
RFRNAGFAGLYRGSAASFSAGLVGHFPFFFTVNVVSQAVPLSEDASFLAT
VGRNGGMGFLAAMSADIFTNGFKVLANNKQTCDKGLSYYEVARKIVKRDG
VFSISPVSCEQDSVRLTNPDLHFAPISPACVESTVILNNARLAFSAYSRI
GFRGMSHTFLLCHLQSLSSIVCCLCAGSVDLGQAQVCIVPHNNTRTRLAH
*
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mRNA from alignment at tig00000016_pilon:154430..155676+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10225.t1 ID=Ggra10225.t1|Name=Ggra10225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1247bp|location=Sequence derived from alignment at tig00000016_pilon:154430..155676+ (Gracilaria gracilis GNS1m male)
ATGTACTCTTCGGCGGGCGCCGACGCGTCTGCCCAGATCCGACGTCCGGT
TCCAATGCCGTCGTTGTCCGCGTTGAAGGCCGGAATGCCTGGCGCTGCTG
CTGCCGCTTGCCAGACTGCTTCGTTCATGTGGCTGTCCACTACCGCCGCG
TTTCAGTACCGCTCCGGGGCTACGCTGCGGCAGGCGCTGCAGCTGCTGTA
CGCGCAGGGAGGTGTGAGACGCTTCTACTCAGGACTGGCTCCCACTGTGC
TGCATGTGACGCTGTGTCGCTTTGGGGATACTACTGCTAATAATATGGCT
CTCACACTTGCGCCCACGGATAGTCTTCCGCTTAACACGCTGTGTGCAAG
CTTTGCGGCCGCCGCTTGGAGGGCCACTCTGTTGCCATTGGAGACTGTGC
GTTCTAACATGCAGGTTAGAGGACCGGACGGTTTCTCGCTCGTTGTCGAT
CGCTTTCGTAATGCCGGCTTTGCGGGCTTGTATCGAGGCAGTGCCGCTAG
CTTCTCTGCGGGCTTGGTTGGGCATTTTCCGTTCTTCTTTACCGTCAACG
TCGTATCTCAAGCGGTTCCACTCTCTGAAGATGCTTCATTTCTTGCCACG
GTTGGCCGAAATGGCGGCATGGGATTTCTGGCTGCTATGTCGGCTGATAT
CTTCACAAACGGATTTAAGGTTTTGGCGAACAACAAGCAGACTTGTGACA
AGGGTCTCTCGTACTATGAAGTGGCCCGCAAGATTGTTAAGAGAGATGGT
GTCTTTTCGATTGTAACACGCGGGCTCAAGACAAGAATGCTCTCAAACGG
ACTGCAGGGAGCTACTTTTGTTCTGCTGTGGAAAGAGATAGAGTCCCGTC
TCGTGCGAACAAGATTCAGTTCGTCTGACCAATCCTGATTTGCACTTCGC
CCCCATTTGTATGTATCCATGACCGAATCACCTCTCATACTCATTTGTAC
GCTTTCTTGTGTTGGATCAACTGTCATACTGAACAGCGCCCGCTTGTGTT
GGATCAACTGTCATATTGAACAGCGCCCGCTTGTGTTGAATCAACTGTCA
TATTGAACAACGCCCGCTTGGCCTTCTCTGCATATTCTCGTATTGGCTTC
CGCGGCATGTCACACACTTTTTTGCTATGCCACCTCCAATCCTTATCAAG
TATCGTATGCTGTTTGTGTGCCGGGTCTGTCGACCTCGGTCAAGCACAGG
TGTGTATTGTACCGCATAATAACACAAGGACAAGGCTGGCACATTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:154430..155676+

>Ggra10225.t1 ID=Ggra10225.t1|Name=Ggra10225.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000016_pilon:154430..155676+ (Gracilaria gracilis GNS1m male)
ATGTACTCTTCGGCGGGCGCCGACGCGTCTGCCCAGATCCGACGTCCGGT
TCCAATGCCGTCGTTGTCCGCGTTGAAGGCCGGAATGCCTGGCGCTGCTG
CTGCCGCTTGCCAGACTGCTTCGTTCATGTGGCTGTCCACTACCGCCGCG
TTTCAGTACCGCTCCGGGGCTACGCTGCGGCAGGCGCTGCAGCTGCTGTA
CGCGCAGGGAGGTGTGAGACGCTTCTACTCAGGACTGGCTCCCACTGTGC
TGCATGTGACGCTGTGTCGCTTTGGGGATACTACTGCTAATAATATGGCT
CTCACACTTGCGCCCACGGATAGTCTTCCGCTTAACACGCTGTGTGCAAG
CTTTGCGGCCGCCGCTTGGAGGGCCACTCTGTTGCCATTGGAGACTGTGC
GTTCTAACATGCAGGTTAGAGGACCGGACGGTTTCTCGCTCGTTGTCGAT
CGCTTTCGTAATGCCGGCTTTGCGGGCTTGTATCGAGGCAGTGCCGCTAG
CTTCTCTGCGGGCTTGGTTGGGCATTTTCCGTTCTTCTTTACCGTCAACG
TCGTATCTCAAGCGGTTCCACTCTCTGAAGATGCTTCATTTCTTGCCACG
GTTGGCCGAAATGGCGGCATGGGATTTCTGGCTGCTATGTCGGCTGATAT
CTTCACAAACGGATTTAAGGTTTTGGCGAACAACAAGCAGACTTGTGACA
AGGGTCTCTCGTACTATGAAGTGGCCCGCAAGATTGTTAAGAGAGATGGT
GTCTTTTCGATTAGTCCCGTCTCGTGCGAACAAGATTCAGTTCGTCTGAC
CAATCCTGATTTGCACTTCGCCCCCATTTCGCCCGCTTGTGTTGAATCAA
CTGTCATATTGAACAACGCCCGCTTGGCCTTCTCTGCATATTCTCGTATT
GGCTTCCGCGGCATGTCACACACTTTTTTGCTATGCCACCTCCAATCCTT
ATCAAGTATCGTATGCTGTTTGTGTGCCGGGTCTGTCGACCTCGGTCAAG
CACAGGTGTGTATTGTACCGCATAATAACACAAGGACAAGGCTGGCACAT
TGA
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