Ggra10221.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10221.t1
Unique Name	Ggra10221.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	505

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:129859..131373 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10221	Ggra10221	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 129859..131373 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10221.t1.start1	Ggra10221.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 129859..129861 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10221.t1.CDS1	Ggra10221.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 129859..131373 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10221.t1.exon1	Ggra10221.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 129859..131373 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10221.t1.stop1	Ggra10221.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 131371..131373 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10221.t1	Ggra10221.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 129859..131373 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:129859..131373+
coding sequence from alignment at tig00000016_pilon:129859..131373+

mRNA sequence

>Ggra10221.t1 ID=Ggra10221.t1|Name=Ggra10221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=505bp
MKGEINASNEDPTGVYELLVTTMGKKQTQGLGIEEINKRCLHNISTELGD
SFSAVKSSIVDGLSKSKQIAREVDALPDVMNRELKDLPEKLKLPLLESTR
QKVLTLLAQLHAAAEDPIQLYPRLVCGNIPIDPAKVTRFSKQYRILERLH
DFDEHIGIDDRSLSSPPKSSGEVLTKVVASAETISTTVLESIDLMSGLDK
DFGEITEFVATLLQVKDPMDELLNLQEEAYGTMNRLRAMFSTEEEASESG
SEQEGERALDGGILQTVKTGSALLDNIIQSRSMLDESVLRIRSFTGLFAK
QMDALQKRLEKIHGLFEGLTSVLKQFIANLPRFTREIRQFFVPTGWRSYI
MRPSDDLMSLLSGIEDLATSLPDPDSLQSSTTENLDNSDLVGTLKNIKEG
LEETTRIPSRLLDAVQEQDFQQKINASVRGTLLSLLDELLSSAVDEMTEN
VEDVLEQFTDRVEDFFPQNDSSDPELVPSNNKKEGVFHSFVNGVQGSGLF
KAIF*

spliced messenger RNA

>Ggra10221.t1 ID=Ggra10221.t1|Name=Ggra10221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000016_pilon:129859..131373+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGGGAAATCAATGCTTCTAATGAAGACCCAACGGGTGTCTATGA
GCTTCTGGTTACCACGATGGGCAAGAAGCAAACCCAAGGGCTTGGGATTG
AAGAAATCAACAAGCGATGTCTGCACAACATCTCTACTGAACTTGGAGAT
AGTTTCTCGGCAGTCAAGTCATCAATAGTGGATGGTTTGAGTAAATCGAA
GCAAATTGCACGGGAAGTTGATGCGCTACCGGATGTCATGAACAGGGAGC
TCAAGGATTTACCCGAGAAACTCAAATTGCCTTTGCTAGAAAGCACTCGC
CAAAAGGTACTGACTTTGCTCGCACAACTTCATGCCGCTGCAGAGGATCC
TATCCAGCTTTACCCACGTCTTGTCTGCGGCAACATTCCTATAGACCCGG
CAAAAGTAACCAGGTTTTCTAAGCAGTACCGCATTCTTGAACGATTGCAT
GACTTTGATGAGCACATTGGTATAGACGATCGTTCATTATCCAGTCCACC
GAAGTCGTCTGGAGAAGTTTTGACAAAAGTAGTAGCATCTGCTGAAACAA
TTTCGACCACTGTTCTTGAGTCAATAGATCTGATGTCAGGACTGGACAAA
GACTTTGGAGAAATCACGGAATTCGTGGCAACACTGCTTCAAGTCAAGGA
TCCTATGGATGAACTTTTGAATCTCCAGGAAGAAGCGTATGGGACGATGA
ATCGACTAAGGGCTATGTTTTCGACTGAAGAAGAGGCTTCAGAATCTGGA
AGCGAACAAGAGGGGGAAAGGGCTCTTGACGGAGGAATTCTCCAAACTGT
CAAAACCGGTTCAGCACTTCTTGACAACATTATCCAAAGTCGTAGTATGC
TTGATGAATCAGTTTTGAGAATACGGAGTTTCACGGGATTGTTCGCAAAA
CAGATGGACGCTCTCCAGAAGCGATTGGAGAAGATACATGGTTTATTCGA
AGGCTTGACTAGCGTGCTCAAGCAGTTCATTGCCAATCTTCCACGTTTCA
CGCGGGAGATACGACAGTTCTTTGTTCCAACAGGATGGAGATCCTATATT
ATGAGACCGTCAGATGACCTGATGAGCTTGCTTTCGGGAATCGAAGATCT
AGCAACATCACTGCCTGACCCGGATAGCTTGCAAAGTTCCACCACTGAAA
ACCTGGATAACAGCGATCTAGTTGGAACTTTGAAGAACATCAAGGAGGGC
TTAGAAGAAACGACGCGAATCCCGTCGAGATTACTAGACGCAGTACAGGA
GCAAGACTTTCAACAGAAAATTAATGCTTCTGTTAGAGGTACGCTGCTAT
CCCTACTCGACGAGCTCCTAAGCTCAGCGGTCGATGAGATGACGGAAAAC
GTCGAAGACGTGCTCGAACAGTTTACGGACAGAGTTGAGGATTTCTTCCC
ACAGAACGATTCTTCAGACCCCGAGCTGGTCCCATCGAATAACAAAAAGG
AAGGCGTCTTTCACAGTTTTGTGAACGGCGTCCAAGGCAGTGGGCTGTTC
AAAGCAATCTTTTGA

protein sequence of Ggra10221.t1

>Ggra10221.t1 ID=Ggra10221.t1|Name=Ggra10221.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=505bp
MKGEINASNEDPTGVYELLVTTMGKKQTQGLGIEEINKRCLHNISTELGD
SFSAVKSSIVDGLSKSKQIAREVDALPDVMNRELKDLPEKLKLPLLESTR
QKVLTLLAQLHAAAEDPIQLYPRLVCGNIPIDPAKVTRFSKQYRILERLH
DFDEHIGIDDRSLSSPPKSSGEVLTKVVASAETISTTVLESIDLMSGLDK
DFGEITEFVATLLQVKDPMDELLNLQEEAYGTMNRLRAMFSTEEEASESG
SEQEGERALDGGILQTVKTGSALLDNIIQSRSMLDESVLRIRSFTGLFAK
QMDALQKRLEKIHGLFEGLTSVLKQFIANLPRFTREIRQFFVPTGWRSYI
MRPSDDLMSLLSGIEDLATSLPDPDSLQSSTTENLDNSDLVGTLKNIKEG
LEETTRIPSRLLDAVQEQDFQQKINASVRGTLLSLLDELLSSAVDEMTEN
VEDVLEQFTDRVEDFFPQNDSSDPELVPSNNKKEGVFHSFVNGVQGSGLF
KAIF*

mRNA from alignment at tig00000016_pilon:129859..131373+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10221.t1 ID=Ggra10221.t1|Name=Ggra10221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000016_pilon:129859..131373+ (Gracilaria gracilis GNS1m male)
ATGAAGGGGGAAATCAATGCTTCTAATGAAGACCCAACGGGTGTCTATGA
GCTTCTGGTTACCACGATGGGCAAGAAGCAAACCCAAGGGCTTGGGATTG
AAGAAATCAACAAGCGATGTCTGCACAACATCTCTACTGAACTTGGAGAT
AGTTTCTCGGCAGTCAAGTCATCAATAGTGGATGGTTTGAGTAAATCGAA
GCAAATTGCACGGGAAGTTGATGCGCTACCGGATGTCATGAACAGGGAGC
TCAAGGATTTACCCGAGAAACTCAAATTGCCTTTGCTAGAAAGCACTCGC
CAAAAGGTACTGACTTTGCTCGCACAACTTCATGCCGCTGCAGAGGATCC
TATCCAGCTTTACCCACGTCTTGTCTGCGGCAACATTCCTATAGACCCGG
CAAAAGTAACCAGGTTTTCTAAGCAGTACCGCATTCTTGAACGATTGCAT
GACTTTGATGAGCACATTGGTATAGACGATCGTTCATTATCCAGTCCACC
GAAGTCGTCTGGAGAAGTTTTGACAAAAGTAGTAGCATCTGCTGAAACAA
TTTCGACCACTGTTCTTGAGTCAATAGATCTGATGTCAGGACTGGACAAA
GACTTTGGAGAAATCACGGAATTCGTGGCAACACTGCTTCAAGTCAAGGA
TCCTATGGATGAACTTTTGAATCTCCAGGAAGAAGCGTATGGGACGATGA
ATCGACTAAGGGCTATGTTTTCGACTGAAGAAGAGGCTTCAGAATCTGGA
AGCGAACAAGAGGGGGAAAGGGCTCTTGACGGAGGAATTCTCCAAACTGT
CAAAACCGGTTCAGCACTTCTTGACAACATTATCCAAAGTCGTAGTATGC
TTGATGAATCAGTTTTGAGAATACGGAGTTTCACGGGATTGTTCGCAAAA
CAGATGGACGCTCTCCAGAAGCGATTGGAGAAGATACATGGTTTATTCGA
AGGCTTGACTAGCGTGCTCAAGCAGTTCATTGCCAATCTTCCACGTTTCA
CGCGGGAGATACGACAGTTCTTTGTTCCAACAGGATGGAGATCCTATATT
ATGAGACCGTCAGATGACCTGATGAGCTTGCTTTCGGGAATCGAAGATCT
AGCAACATCACTGCCTGACCCGGATAGCTTGCAAAGTTCCACCACTGAAA
ACCTGGATAACAGCGATCTAGTTGGAACTTTGAAGAACATCAAGGAGGGC
TTAGAAGAAACGACGCGAATCCCGTCGAGATTACTAGACGCAGTACAGGA
GCAAGACTTTCAACAGAAAATTAATGCTTCTGTTAGAGGTACGCTGCTAT
CCCTACTCGACGAGCTCCTAAGCTCAGCGGTCGATGAGATGACGGAAAAC
GTCGAAGACGTGCTCGAACAGTTTACGGACAGAGTTGAGGATTTCTTCCC
ACAGAACGATTCTTCAGACCCCGAGCTGGTCCCATCGAATAACAAAAAGG
AAGGCGTCTTTCACAGTTTTGTGAACGGCGTCCAAGGCAGTGGGCTGTTC
AAAGCAATCTTTTGA

Coding sequence (CDS) from alignment at tig00000016_pilon:129859..131373+

>Ggra10221.t1 ID=Ggra10221.t1|Name=Ggra10221.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1515bp|location=Sequence derived from alignment at tig00000016_pilon:129859..131373+ (Gracilaria gracilis GNS1m male)
ATGAAGGGGGAAATCAATGCTTCTAATGAAGACCCAACGGGTGTCTATGA
GCTTCTGGTTACCACGATGGGCAAGAAGCAAACCCAAGGGCTTGGGATTG
AAGAAATCAACAAGCGATGTCTGCACAACATCTCTACTGAACTTGGAGAT
AGTTTCTCGGCAGTCAAGTCATCAATAGTGGATGGTTTGAGTAAATCGAA
GCAAATTGCACGGGAAGTTGATGCGCTACCGGATGTCATGAACAGGGAGC
TCAAGGATTTACCCGAGAAACTCAAATTGCCTTTGCTAGAAAGCACTCGC
CAAAAGGTACTGACTTTGCTCGCACAACTTCATGCCGCTGCAGAGGATCC
TATCCAGCTTTACCCACGTCTTGTCTGCGGCAACATTCCTATAGACCCGG
CAAAAGTAACCAGGTTTTCTAAGCAGTACCGCATTCTTGAACGATTGCAT
GACTTTGATGAGCACATTGGTATAGACGATCGTTCATTATCCAGTCCACC
GAAGTCGTCTGGAGAAGTTTTGACAAAAGTAGTAGCATCTGCTGAAACAA
TTTCGACCACTGTTCTTGAGTCAATAGATCTGATGTCAGGACTGGACAAA
GACTTTGGAGAAATCACGGAATTCGTGGCAACACTGCTTCAAGTCAAGGA
TCCTATGGATGAACTTTTGAATCTCCAGGAAGAAGCGTATGGGACGATGA
ATCGACTAAGGGCTATGTTTTCGACTGAAGAAGAGGCTTCAGAATCTGGA
AGCGAACAAGAGGGGGAAAGGGCTCTTGACGGAGGAATTCTCCAAACTGT
CAAAACCGGTTCAGCACTTCTTGACAACATTATCCAAAGTCGTAGTATGC
TTGATGAATCAGTTTTGAGAATACGGAGTTTCACGGGATTGTTCGCAAAA
CAGATGGACGCTCTCCAGAAGCGATTGGAGAAGATACATGGTTTATTCGA
AGGCTTGACTAGCGTGCTCAAGCAGTTCATTGCCAATCTTCCACGTTTCA
CGCGGGAGATACGACAGTTCTTTGTTCCAACAGGATGGAGATCCTATATT
ATGAGACCGTCAGATGACCTGATGAGCTTGCTTTCGGGAATCGAAGATCT
AGCAACATCACTGCCTGACCCGGATAGCTTGCAAAGTTCCACCACTGAAA
ACCTGGATAACAGCGATCTAGTTGGAACTTTGAAGAACATCAAGGAGGGC
TTAGAAGAAACGACGCGAATCCCGTCGAGATTACTAGACGCAGTACAGGA
GCAAGACTTTCAACAGAAAATTAATGCTTCTGTTAGAGGTACGCTGCTAT
CCCTACTCGACGAGCTCCTAAGCTCAGCGGTCGATGAGATGACGGAAAAC
GTCGAAGACGTGCTCGAACAGTTTACGGACAGAGTTGAGGATTTCTTCCC
ACAGAACGATTCTTCAGACCCCGAGCTGGTCCCATCGAATAACAAAAAGG
AAGGCGTCTTTCACAGTTTTGTGAACGGCGTCCAAGGCAGTGGGCTGTTC
AAAGCAATCTTTTGA