Ggra10217.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10217.t1
Unique NameGgra10217.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length436
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:119952..121259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707089.1
PFAMsDUF563
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K18134
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,map00514
Evalue1.49e-12
EggNOG OGs2E70N@1|root,2SDNQ@2759|Eukaryota
EC2.4.1.255
DescriptionProtein of unknown function (DUF563)
COG categoryS
CAZyGT41
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10217Ggra10217Gracilaria gracilis GNS1m malegenetig00000016_pilon 119952..121259 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10217.t1.stop1Ggra10217.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 119952..119954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10217.t1.CDS1Ggra10217.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 119952..121259 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10217.t1.exon1Ggra10217.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 119952..121259 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10217.t1.start1Ggra10217.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 121257..121259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10217.t1Ggra10217.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 119952..121259 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10217.t1 ID=Ggra10217.t1|Name=Ggra10217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=436bp
MVRFWFGFPVILLILVQCSSSQARLDRCNFESRIRVSRRYTHADCNDPQA
NRSKSLLIDIPRIHGNPYHALYEVAWAVSYYLQNCLGRPHWQFGASNTFL
RIRVNFQMNLTRCGQEPSGEEYMRWEQPSWGSCMLLAVAQRAGIPMSNIE
VVPHGEVKSACHTAVVEFPPRFRSLSYEVGKRPRLDWGRAKQYLEREKVD
STLYAMQKDVFRAYKVKTKEQKADKVNVLLYDRRDRRPYPLKRKWASAQA
LESRLRRDKRVSVTYVSELPKSLAAQAVLFHSADILVAPHGAAMANTVFM
KRHSHVFEIWKCCKDEVREKPEEAHRWTGWHAGRMGLKLYYLQCHRPNEA
LSVRQLKRLSEQDGQHSDQWCGLPWVEVEMEHTYRQVRRAVAEQWKRKAL
RKPLVAADLSVGLELVGVAVVLTALFGRKASRRLR*
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spliced messenger RNA

>Ggra10217.t1 ID=Ggra10217.t1|Name=Ggra10217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00000016_pilon:119952..121259- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAGGTTTTGGTTTGGCTTTCCTGTTATACTGCTGATACTGGTTCA
ATGTTCATCGTCGCAGGCTCGTTTGGATCGGTGCAACTTTGAATCTCGCA
TTCGAGTATCGCGACGATACACTCATGCAGACTGCAATGACCCGCAAGCA
AATCGGTCAAAATCGCTATTGATAGACATTCCAAGGATACATGGCAATCC
ATACCACGCATTGTACGAAGTAGCATGGGCGGTTTCGTACTATCTTCAAA
ACTGCCTTGGAAGACCGCATTGGCAGTTTGGTGCGAGCAATACGTTTCTC
CGCATTCGAGTCAACTTCCAAATGAACCTGACGCGCTGCGGACAGGAACC
AAGTGGCGAGGAGTATATGCGATGGGAACAGCCTAGCTGGGGATCTTGTA
TGCTGTTGGCCGTGGCGCAACGAGCTGGAATCCCAATGTCTAACATCGAG
GTGGTGCCGCATGGGGAGGTGAAGAGCGCTTGTCACACAGCGGTGGTAGA
GTTTCCACCCAGATTTCGAAGTCTTTCTTACGAGGTAGGTAAACGGCCGC
GCCTAGACTGGGGGCGAGCAAAACAGTATTTGGAGCGAGAAAAAGTGGAT
AGCACGCTGTATGCGATGCAAAAGGACGTTTTTCGCGCATACAAGGTGAA
GACGAAGGAACAAAAGGCGGACAAAGTGAACGTGCTTCTGTATGACAGAA
GAGACAGACGGCCATACCCCCTAAAACGAAAATGGGCGTCTGCTCAAGCT
CTGGAATCGCGACTACGCAGGGACAAGCGTGTTTCGGTGACATACGTTAG
CGAGTTGCCGAAATCGCTTGCGGCACAGGCGGTTCTATTCCACTCGGCGG
ACATCCTGGTGGCGCCGCACGGAGCAGCCATGGCGAACACGGTGTTCATG
AAGAGGCACAGCCACGTGTTCGAGATCTGGAAGTGCTGCAAGGACGAGGT
GCGCGAAAAGCCCGAAGAAGCGCATCGGTGGACGGGGTGGCACGCCGGGC
GAATGGGGTTGAAGCTGTACTACTTGCAATGCCATCGGCCAAACGAGGCG
TTGAGCGTGCGGCAACTGAAACGGCTGAGCGAGCAGGACGGGCAGCACAG
CGACCAGTGGTGCGGACTGCCGTGGGTGGAGGTGGAGATGGAACACACGT
ACAGACAGGTGCGGCGCGCGGTGGCGGAACAGTGGAAACGGAAAGCGCTG
CGCAAGCCGCTGGTGGCCGCCGACCTGAGCGTGGGGCTGGAGCTGGTGGG
CGTGGCGGTAGTGCTGACAGCATTGTTCGGACGGAAGGCGTCGCGAAGGC
TGCGGTAA
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protein sequence of Ggra10217.t1

>Ggra10217.t1 ID=Ggra10217.t1|Name=Ggra10217.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=436bp
MVRFWFGFPVILLILVQCSSSQARLDRCNFESRIRVSRRYTHADCNDPQA
NRSKSLLIDIPRIHGNPYHALYEVAWAVSYYLQNCLGRPHWQFGASNTFL
RIRVNFQMNLTRCGQEPSGEEYMRWEQPSWGSCMLLAVAQRAGIPMSNIE
VVPHGEVKSACHTAVVEFPPRFRSLSYEVGKRPRLDWGRAKQYLEREKVD
STLYAMQKDVFRAYKVKTKEQKADKVNVLLYDRRDRRPYPLKRKWASAQA
LESRLRRDKRVSVTYVSELPKSLAAQAVLFHSADILVAPHGAAMANTVFM
KRHSHVFEIWKCCKDEVREKPEEAHRWTGWHAGRMGLKLYYLQCHRPNEA
LSVRQLKRLSEQDGQHSDQWCGLPWVEVEMEHTYRQVRRAVAEQWKRKAL
RKPLVAADLSVGLELVGVAVVLTALFGRKASRRLR*
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mRNA from alignment at tig00000016_pilon:119952..121259-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10217.t1 ID=Ggra10217.t1|Name=Ggra10217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00000016_pilon:119952..121259- (Gracilaria gracilis GNS1m male)
ATGGTGAGGTTTTGGTTTGGCTTTCCTGTTATACTGCTGATACTGGTTCA
ATGTTCATCGTCGCAGGCTCGTTTGGATCGGTGCAACTTTGAATCTCGCA
TTCGAGTATCGCGACGATACACTCATGCAGACTGCAATGACCCGCAAGCA
AATCGGTCAAAATCGCTATTGATAGACATTCCAAGGATACATGGCAATCC
ATACCACGCATTGTACGAAGTAGCATGGGCGGTTTCGTACTATCTTCAAA
ACTGCCTTGGAAGACCGCATTGGCAGTTTGGTGCGAGCAATACGTTTCTC
CGCATTCGAGTCAACTTCCAAATGAACCTGACGCGCTGCGGACAGGAACC
AAGTGGCGAGGAGTATATGCGATGGGAACAGCCTAGCTGGGGATCTTGTA
TGCTGTTGGCCGTGGCGCAACGAGCTGGAATCCCAATGTCTAACATCGAG
GTGGTGCCGCATGGGGAGGTGAAGAGCGCTTGTCACACAGCGGTGGTAGA
GTTTCCACCCAGATTTCGAAGTCTTTCTTACGAGGTAGGTAAACGGCCGC
GCCTAGACTGGGGGCGAGCAAAACAGTATTTGGAGCGAGAAAAAGTGGAT
AGCACGCTGTATGCGATGCAAAAGGACGTTTTTCGCGCATACAAGGTGAA
GACGAAGGAACAAAAGGCGGACAAAGTGAACGTGCTTCTGTATGACAGAA
GAGACAGACGGCCATACCCCCTAAAACGAAAATGGGCGTCTGCTCAAGCT
CTGGAATCGCGACTACGCAGGGACAAGCGTGTTTCGGTGACATACGTTAG
CGAGTTGCCGAAATCGCTTGCGGCACAGGCGGTTCTATTCCACTCGGCGG
ACATCCTGGTGGCGCCGCACGGAGCAGCCATGGCGAACACGGTGTTCATG
AAGAGGCACAGCCACGTGTTCGAGATCTGGAAGTGCTGCAAGGACGAGGT
GCGCGAAAAGCCCGAAGAAGCGCATCGGTGGACGGGGTGGCACGCCGGGC
GAATGGGGTTGAAGCTGTACTACTTGCAATGCCATCGGCCAAACGAGGCG
TTGAGCGTGCGGCAACTGAAACGGCTGAGCGAGCAGGACGGGCAGCACAG
CGACCAGTGGTGCGGACTGCCGTGGGTGGAGGTGGAGATGGAACACACGT
ACAGACAGGTGCGGCGCGCGGTGGCGGAACAGTGGAAACGGAAAGCGCTG
CGCAAGCCGCTGGTGGCCGCCGACCTGAGCGTGGGGCTGGAGCTGGTGGG
CGTGGCGGTAGTGCTGACAGCATTGTTCGGACGGAAGGCGTCGCGAAGGC
TGCGGTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:119952..121259-

>Ggra10217.t1 ID=Ggra10217.t1|Name=Ggra10217.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1308bp|location=Sequence derived from alignment at tig00000016_pilon:119952..121259- (Gracilaria gracilis GNS1m male)
ATGGTGAGGTTTTGGTTTGGCTTTCCTGTTATACTGCTGATACTGGTTCA
ATGTTCATCGTCGCAGGCTCGTTTGGATCGGTGCAACTTTGAATCTCGCA
TTCGAGTATCGCGACGATACACTCATGCAGACTGCAATGACCCGCAAGCA
AATCGGTCAAAATCGCTATTGATAGACATTCCAAGGATACATGGCAATCC
ATACCACGCATTGTACGAAGTAGCATGGGCGGTTTCGTACTATCTTCAAA
ACTGCCTTGGAAGACCGCATTGGCAGTTTGGTGCGAGCAATACGTTTCTC
CGCATTCGAGTCAACTTCCAAATGAACCTGACGCGCTGCGGACAGGAACC
AAGTGGCGAGGAGTATATGCGATGGGAACAGCCTAGCTGGGGATCTTGTA
TGCTGTTGGCCGTGGCGCAACGAGCTGGAATCCCAATGTCTAACATCGAG
GTGGTGCCGCATGGGGAGGTGAAGAGCGCTTGTCACACAGCGGTGGTAGA
GTTTCCACCCAGATTTCGAAGTCTTTCTTACGAGGTAGGTAAACGGCCGC
GCCTAGACTGGGGGCGAGCAAAACAGTATTTGGAGCGAGAAAAAGTGGAT
AGCACGCTGTATGCGATGCAAAAGGACGTTTTTCGCGCATACAAGGTGAA
GACGAAGGAACAAAAGGCGGACAAAGTGAACGTGCTTCTGTATGACAGAA
GAGACAGACGGCCATACCCCCTAAAACGAAAATGGGCGTCTGCTCAAGCT
CTGGAATCGCGACTACGCAGGGACAAGCGTGTTTCGGTGACATACGTTAG
CGAGTTGCCGAAATCGCTTGCGGCACAGGCGGTTCTATTCCACTCGGCGG
ACATCCTGGTGGCGCCGCACGGAGCAGCCATGGCGAACACGGTGTTCATG
AAGAGGCACAGCCACGTGTTCGAGATCTGGAAGTGCTGCAAGGACGAGGT
GCGCGAAAAGCCCGAAGAAGCGCATCGGTGGACGGGGTGGCACGCCGGGC
GAATGGGGTTGAAGCTGTACTACTTGCAATGCCATCGGCCAAACGAGGCG
TTGAGCGTGCGGCAACTGAAACGGCTGAGCGAGCAGGACGGGCAGCACAG
CGACCAGTGGTGCGGACTGCCGTGGGTGGAGGTGGAGATGGAACACACGT
ACAGACAGGTGCGGCGCGCGGTGGCGGAACAGTGGAAACGGAAAGCGCTG
CGCAAGCCGCTGGTGGCCGCCGACCTGAGCGTGGGGCTGGAGCTGGTGGG
CGTGGCGGTAGTGCTGACAGCATTGTTCGGACGGAAGGCGTCGCGAAGGC
TGCGGTAA
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