Ggra10213.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10213.t1
Unique NameGgra10213.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:107064..107824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps24560
PFAMsThioredoxin
Max annot lvl2836|Bacillariophyta
Evalue2.75e-20
EggNOG OGsCOG0526@1|root,KOG0190@2759|Eukaryota,2XH62@2836|Bacillariophyta
DescriptionThioredoxin
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10213Ggra10213Gracilaria gracilis GNS1m malegenetig00000016_pilon 107064..107824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10213.t1Ggra10213.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 107064..107824 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10213.t1.stop1Ggra10213.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 107064..107066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10213.t1.CDS1Ggra10213.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 107064..107552 -
Ggra10213.t1.CDS2Ggra10213.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 107642..107824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10213.t1.exon1Ggra10213.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 107064..107552 -
Ggra10213.t1.exon2Ggra10213.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 107642..107824 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10213.t1.intron1Ggra10213.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 107553..107641 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10213.t1.start1Ggra10213.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 107822..107824 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10213.t1 ID=Ggra10213.t1|Name=Ggra10213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=224bp
MAAGRILLSVSLLLLSSLLAAADAHSSSTRVLELELLSLDHLITTSSKPL
LLQFYSPTCYHCVRFAPAYEQIAQRLHTNANVARVDGIAHRALRLRFRVM
AFPSFFLIHAGSVFEFVGSRSSDELVKFVQSNGTASGQKLTAINGPLSPY
WRLVHLLFRFVHFLQVEFNQYRLNGGNVPLLLMAVMTGVLSAFVVVIYLI
TLPPKPLPSRSRWDVAATHDHHD*
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spliced messenger RNA

>Ggra10213.t1 ID=Ggra10213.t1|Name=Ggra10213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000016_pilon:107064..107824- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGGCCGCATCTTGCTCAGCGTCTCGCTGCTGCTACTGTCGTC
GTTGCTCGCCGCGGCTGACGCGCACTCGTCGTCTACGCGCGTGCTCGAGC
TGGAGTTGTTGTCGCTCGACCACCTCATCACGACCAGCTCCAAGCCGCTG
TTGCTGCAGTTCTACTCGCCCACTTGCTATCACTGTGTGCGATTCGCGCC
CGCATACGAGCAGATCGCGCAGCGGCTGCACACCAACGCCAACGTGGCGA
GGGTGGATGGCATCGCGCACCGCGCGCTGCGCCTGCGTTTCCGCGTGATG
GCGTTCCCTTCCTTCTTCCTCATTCACGCTGGCTCCGTGTTCGAGTTCGT
GGGCTCGCGCTCCTCGGACGAGCTCGTCAAGTTTGTGCAGTCCAATGGAA
CCGCCTCGGGGCAGAAGCTGACTGCCATTAACGGCCCGCTCAGCCCGTAC
TGGCGCCTTGTGCATCTACTGTTCCGCTTCGTACACTTTCTGCAAGTTGA
GTTCAATCAGTACAGACTCAACGGCGGCAACGTACCGCTGCTGCTGATGG
CGGTCATGACCGGCGTGTTGTCCGCGTTTGTGGTGGTCATCTATCTTATC
ACTCTGCCGCCCAAGCCGCTTCCATCGCGCAGTCGATGGGACGTTGCTGC
TACTCACGACCACCACGACTGA
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protein sequence of Ggra10213.t1

>Ggra10213.t1 ID=Ggra10213.t1|Name=Ggra10213.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=224bp
MAAGRILLSVSLLLLSSLLAAADAHSSSTRVLELELLSLDHLITTSSKPL
LLQFYSPTCYHCVRFAPAYEQIAQRLHTNANVARVDGIAHRALRLRFRVM
AFPSFFLIHAGSVFEFVGSRSSDELVKFVQSNGTASGQKLTAINGPLSPY
WRLVHLLFRFVHFLQVEFNQYRLNGGNVPLLLMAVMTGVLSAFVVVIYLI
TLPPKPLPSRSRWDVAATHDHHD*
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mRNA from alignment at tig00000016_pilon:107064..107824-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10213.t1 ID=Ggra10213.t1|Name=Ggra10213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=761bp|location=Sequence derived from alignment at tig00000016_pilon:107064..107824- (Gracilaria gracilis GNS1m male)
ATGGCCGCCGGCCGCATCTTGCTCAGCGTCTCGCTGCTGCTACTGTCGTC
GTTGCTCGCCGCGGCTGACGCGCACTCGTCGTCTACGCGCGTGCTCGAGC
TGGAGTTGTTGTCGCTCGACCACCTCATCACGACCAGCTCCAAGCCGCTG
TTGCTGCAGTTCTACTCGCCCACTTGCTATCACGTAAGTCGCTCGCCTTG
ACGCGCCCCAGCCGCATGCGCTGCTCACTGACTCATCCCCGCTTCCATGC
CGTGCCGCGTTGCCGCGCTTAGTGTGTGCGATTCGCGCCCGCATACGAGC
AGATCGCGCAGCGGCTGCACACCAACGCCAACGTGGCGAGGGTGGATGGC
ATCGCGCACCGCGCGCTGCGCCTGCGTTTCCGCGTGATGGCGTTCCCTTC
CTTCTTCCTCATTCACGCTGGCTCCGTGTTCGAGTTCGTGGGCTCGCGCT
CCTCGGACGAGCTCGTCAAGTTTGTGCAGTCCAATGGAACCGCCTCGGGG
CAGAAGCTGACTGCCATTAACGGCCCGCTCAGCCCGTACTGGCGCCTTGT
GCATCTACTGTTCCGCTTCGTACACTTTCTGCAAGTTGAGTTCAATCAGT
ACAGACTCAACGGCGGCAACGTACCGCTGCTGCTGATGGCGGTCATGACC
GGCGTGTTGTCCGCGTTTGTGGTGGTCATCTATCTTATCACTCTGCCGCC
CAAGCCGCTTCCATCGCGCAGTCGATGGGACGTTGCTGCTACTCACGACC
ACCACGACTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:107064..107824-

>Ggra10213.t1 ID=Ggra10213.t1|Name=Ggra10213.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=672bp|location=Sequence derived from alignment at tig00000016_pilon:107064..107824- (Gracilaria gracilis GNS1m male)
ATGGCCGCCGGCCGCATCTTGCTCAGCGTCTCGCTGCTGCTACTGTCGTC
GTTGCTCGCCGCGGCTGACGCGCACTCGTCGTCTACGCGCGTGCTCGAGC
TGGAGTTGTTGTCGCTCGACCACCTCATCACGACCAGCTCCAAGCCGCTG
TTGCTGCAGTTCTACTCGCCCACTTGCTATCACTGTGTGCGATTCGCGCC
CGCATACGAGCAGATCGCGCAGCGGCTGCACACCAACGCCAACGTGGCGA
GGGTGGATGGCATCGCGCACCGCGCGCTGCGCCTGCGTTTCCGCGTGATG
GCGTTCCCTTCCTTCTTCCTCATTCACGCTGGCTCCGTGTTCGAGTTCGT
GGGCTCGCGCTCCTCGGACGAGCTCGTCAAGTTTGTGCAGTCCAATGGAA
CCGCCTCGGGGCAGAAGCTGACTGCCATTAACGGCCCGCTCAGCCCGTAC
TGGCGCCTTGTGCATCTACTGTTCCGCTTCGTACACTTTCTGCAAGTTGA
GTTCAATCAGTACAGACTCAACGGCGGCAACGTACCGCTGCTGCTGATGG
CGGTCATGACCGGCGTGTTGTCCGCGTTTGTGGTGGTCATCTATCTTATC
ACTCTGCCGCCCAAGCCGCTTCCATCGCGCAGTCGATGGGACGTTGCTGC
TACTCACGACCACCACGACTGA
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