Ggra1021.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1021.t1
Unique Name	Ggra1021.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	570

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:607231..608940 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1021	Ggra1021	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 607231..608940 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1021.t1.start1	Ggra1021.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 607231..607233 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1021.t1.CDS1	Ggra1021.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 607231..608940 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1021.t1.exon1	Ggra1021.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 607231..608940 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1021.t1.stop1	Ggra1021.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 608938..608940 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1021.t1	Ggra1021.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 607231..608940 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:607231..608940+
coding sequence from alignment at tig00000027_pilon:607231..608940+

mRNA sequence

>Ggra1021.t1 ID=Ggra1021.t1|Name=Ggra1021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp
MSNGSQKPWGPIRLLNDVQRGLENLFVNYMSADPPLEGNALLDAIREDIG
AMQFVNPDLVSNYEIHKRIRTFLEARSVIIAQNAETGRLVGKRVIAAIWC
DEEHQTVRKRAMDYFDGIRNGEIYLFSPKSPVSPTQIPFRLQDPAEPTVG
PSSSPAAAPTEEQYENKRCSFFASRYGNRHDKFKGQLEEDWTDHISTFMD
YCSDQKIVADDRMTYLHYSLHGDALKFFKSEVRDKIRSWGAVVSAFNDRY
SSLTCREDISGKLRLFRLRQFMKNNETPREALDSLIKEIDRLTPMAHVED
RTDRSKRIFLTSAVQGIHWARPILSHANAARLTYREVMDGLFSSEMNHRQ
FVQEQKGSAQSNHADGDDIQYRPRLRSSNVNFSCDDEEQVPNSVHFTGQG
RYGREPSSRTSFKPAAGHPSQPRRYMPGQQFRKRLEVPLALKVCFNCERN
GCRLFTCPKPRNEALIRKNKQFARDWLRRNRTKGVNLVQDVDDSDFAAQC
LETLCVEDDFSPNDSHPFVEGGNTYDDPRNISDAYHSTVHPVLLHNSIAL
EQGRCVSETPEDVESDQGF*

spliced messenger RNA

>Ggra1021.t1 ID=Ggra1021.t1|Name=Ggra1021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00000027_pilon:607231..608940+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAACGGTTCGCAGAAGCCCTGGGGACCAATTCGTCTTCTTAATGA
CGTACAAAGAGGACTCGAAAACCTCTTTGTGAACTACATGTCTGCGGACC
CTCCTTTGGAAGGCAATGCGTTACTTGACGCTATCCGTGAAGACATTGGA
GCTATGCAGTTTGTGAACCCGGATCTAGTTAGCAACTACGAGATTCACAA
GCGAATCAGGACTTTCCTCGAAGCTCGTTCTGTGATCATCGCGCAGAACG
CGGAAACGGGACGCCTGGTAGGTAAACGTGTTATTGCGGCTATTTGGTGT
GATGAAGAGCATCAGACCGTCCGAAAGAGAGCTATGGACTACTTTGACGG
GATTCGCAATGGCGAAATCTATCTTTTCTCTCCGAAATCCCCGGTAAGCC
CGACGCAAATCCCGTTCCGCCTTCAGGACCCCGCGGAGCCCACCGTCGGA
CCTAGTTCCAGCCCAGCAGCAGCTCCTACTGAGGAACAGTATGAAAACAA
GAGATGCTCTTTTTTCGCTTCTCGTTACGGCAACCGACACGATAAGTTCA
AAGGTCAACTTGAGGAAGACTGGACAGATCATATATCTACGTTCATGGAC
TACTGCTCTGATCAGAAGATCGTAGCTGATGATCGCATGACTTACTTGCA
CTATTCCCTTCATGGAGATGCACTCAAATTCTTTAAATCGGAAGTTCGTG
ACAAGATCAGATCTTGGGGAGCTGTCGTAAGTGCATTCAACGACCGCTAC
TCATCCCTGACCTGTCGAGAAGATATCTCTGGGAAACTGCGATTATTCAG
GCTACGCCAATTCATGAAGAACAATGAGACTCCTCGAGAAGCATTGGATA
GTCTCATCAAAGAGATAGACAGGCTTACTCCCATGGCTCATGTGGAAGAC
AGGACGGACCGATCGAAACGTATATTTCTCACCAGCGCCGTACAGGGGAT
ACATTGGGCTCGTCCTATTCTGTCACACGCAAATGCGGCAAGATTGACAT
ACCGCGAGGTAATGGATGGCCTTTTCAGTTCCGAAATGAATCACCGCCAG
TTTGTCCAAGAGCAGAAAGGATCGGCTCAAAGTAATCACGCAGATGGTGA
TGACATACAGTATCGTCCTCGATTGAGGAGCTCCAATGTCAACTTCTCTT
GTGACGATGAGGAACAAGTACCGAACTCCGTACATTTTACTGGACAAGGT
CGCTATGGTCGCGAACCCTCTAGCCGTACATCTTTCAAACCAGCAGCTGG
CCATCCTTCTCAGCCCAGACGGTATATGCCTGGTCAACAATTTCGAAAAC
GTTTAGAAGTACCACTAGCCCTGAAGGTCTGTTTCAACTGTGAACGGAAC
GGGTGTCGTTTATTCACGTGTCCCAAGCCCCGCAATGAAGCTCTCATTCG
CAAAAACAAACAATTTGCTCGAGATTGGCTTCGGCGTAACCGCACCAAAG
GCGTTAATCTGGTCCAAGATGTGGACGATTCCGACTTCGCTGCTCAATGC
CTGGAAACCCTCTGTGTCGAAGATGATTTCTCACCCAATGATTCTCACCC
CTTTGTGGAAGGCGGCAATACTTACGACGATCCACGCAATATATCAGATG
CCTATCACTCCACCGTACACCCCGTCCTACTCCATAATTCAATCGCTTTG
GAACAAGGGAGATGCGTTTCAGAAACTCCTGAAGACGTCGAGAGTGACCA
GGGTTTCTGA

protein sequence of Ggra1021.t1

>Ggra1021.t1 ID=Ggra1021.t1|Name=Ggra1021.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=570bp
MSNGSQKPWGPIRLLNDVQRGLENLFVNYMSADPPLEGNALLDAIREDIG
AMQFVNPDLVSNYEIHKRIRTFLEARSVIIAQNAETGRLVGKRVIAAIWC
DEEHQTVRKRAMDYFDGIRNGEIYLFSPKSPVSPTQIPFRLQDPAEPTVG
PSSSPAAAPTEEQYENKRCSFFASRYGNRHDKFKGQLEEDWTDHISTFMD
YCSDQKIVADDRMTYLHYSLHGDALKFFKSEVRDKIRSWGAVVSAFNDRY
SSLTCREDISGKLRLFRLRQFMKNNETPREALDSLIKEIDRLTPMAHVED
RTDRSKRIFLTSAVQGIHWARPILSHANAARLTYREVMDGLFSSEMNHRQ
FVQEQKGSAQSNHADGDDIQYRPRLRSSNVNFSCDDEEQVPNSVHFTGQG
RYGREPSSRTSFKPAAGHPSQPRRYMPGQQFRKRLEVPLALKVCFNCERN
GCRLFTCPKPRNEALIRKNKQFARDWLRRNRTKGVNLVQDVDDSDFAAQC
LETLCVEDDFSPNDSHPFVEGGNTYDDPRNISDAYHSTVHPVLLHNSIAL
EQGRCVSETPEDVESDQGF*

mRNA from alignment at tig00000027_pilon:607231..608940+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1021.t1 ID=Ggra1021.t1|Name=Ggra1021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1710bp|location=Sequence derived from alignment at tig00000027_pilon:607231..608940+ (Gracilaria gracilis GNS1m male)
ATGTCTAACGGTTCGCAGAAGCCCTGGGGACCAATTCGTCTTCTTAATGA
CGTACAAAGAGGACTCGAAAACCTCTTTGTGAACTACATGTCTGCGGACC
CTCCTTTGGAAGGCAATGCGTTACTTGACGCTATCCGTGAAGACATTGGA
GCTATGCAGTTTGTGAACCCGGATCTAGTTAGCAACTACGAGATTCACAA
GCGAATCAGGACTTTCCTCGAAGCTCGTTCTGTGATCATCGCGCAGAACG
CGGAAACGGGACGCCTGGTAGGTAAACGTGTTATTGCGGCTATTTGGTGT
GATGAAGAGCATCAGACCGTCCGAAAGAGAGCTATGGACTACTTTGACGG
GATTCGCAATGGCGAAATCTATCTTTTCTCTCCGAAATCCCCGGTAAGCC
CGACGCAAATCCCGTTCCGCCTTCAGGACCCCGCGGAGCCCACCGTCGGA
CCTAGTTCCAGCCCAGCAGCAGCTCCTACTGAGGAACAGTATGAAAACAA
GAGATGCTCTTTTTTCGCTTCTCGTTACGGCAACCGACACGATAAGTTCA
AAGGTCAACTTGAGGAAGACTGGACAGATCATATATCTACGTTCATGGAC
TACTGCTCTGATCAGAAGATCGTAGCTGATGATCGCATGACTTACTTGCA
CTATTCCCTTCATGGAGATGCACTCAAATTCTTTAAATCGGAAGTTCGTG
ACAAGATCAGATCTTGGGGAGCTGTCGTAAGTGCATTCAACGACCGCTAC
TCATCCCTGACCTGTCGAGAAGATATCTCTGGGAAACTGCGATTATTCAG
GCTACGCCAATTCATGAAGAACAATGAGACTCCTCGAGAAGCATTGGATA
GTCTCATCAAAGAGATAGACAGGCTTACTCCCATGGCTCATGTGGAAGAC
AGGACGGACCGATCGAAACGTATATTTCTCACCAGCGCCGTACAGGGGAT
ACATTGGGCTCGTCCTATTCTGTCACACGCAAATGCGGCAAGATTGACAT
ACCGCGAGGTAATGGATGGCCTTTTCAGTTCCGAAATGAATCACCGCCAG
TTTGTCCAAGAGCAGAAAGGATCGGCTCAAAGTAATCACGCAGATGGTGA
TGACATACAGTATCGTCCTCGATTGAGGAGCTCCAATGTCAACTTCTCTT
GTGACGATGAGGAACAAGTACCGAACTCCGTACATTTTACTGGACAAGGT
CGCTATGGTCGCGAACCCTCTAGCCGTACATCTTTCAAACCAGCAGCTGG
CCATCCTTCTCAGCCCAGACGGTATATGCCTGGTCAACAATTTCGAAAAC
GTTTAGAAGTACCACTAGCCCTGAAGGTCTGTTTCAACTGTGAACGGAAC
GGGTGTCGTTTATTCACGTGTCCCAAGCCCCGCAATGAAGCTCTCATTCG
CAAAAACAAACAATTTGCTCGAGATTGGCTTCGGCGTAACCGCACCAAAG
GCGTTAATCTGGTCCAAGATGTGGACGATTCCGACTTCGCTGCTCAATGC
CTGGAAACCCTCTGTGTCGAAGATGATTTCTCACCCAATGATTCTCACCC
CTTTGTGGAAGGCGGCAATACTTACGACGATCCACGCAATATATCAGATG
CCTATCACTCCACCGTACACCCCGTCCTACTCCATAATTCAATCGCTTTG
GAACAAGGGAGATGCGTTTCAGAAACTCCTGAAGACGTCGAGAGTGACCA
GGGTTTCTGA

Coding sequence (CDS) from alignment at tig00000027_pilon:607231..608940+

>Ggra1021.t1 ID=Ggra1021.t1|Name=Ggra1021.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1710bp|location=Sequence derived from alignment at tig00000027_pilon:607231..608940+ (Gracilaria gracilis GNS1m male)
ATGTCTAACGGTTCGCAGAAGCCCTGGGGACCAATTCGTCTTCTTAATGA
CGTACAAAGAGGACTCGAAAACCTCTTTGTGAACTACATGTCTGCGGACC
CTCCTTTGGAAGGCAATGCGTTACTTGACGCTATCCGTGAAGACATTGGA
GCTATGCAGTTTGTGAACCCGGATCTAGTTAGCAACTACGAGATTCACAA
GCGAATCAGGACTTTCCTCGAAGCTCGTTCTGTGATCATCGCGCAGAACG
CGGAAACGGGACGCCTGGTAGGTAAACGTGTTATTGCGGCTATTTGGTGT
GATGAAGAGCATCAGACCGTCCGAAAGAGAGCTATGGACTACTTTGACGG
GATTCGCAATGGCGAAATCTATCTTTTCTCTCCGAAATCCCCGGTAAGCC
CGACGCAAATCCCGTTCCGCCTTCAGGACCCCGCGGAGCCCACCGTCGGA
CCTAGTTCCAGCCCAGCAGCAGCTCCTACTGAGGAACAGTATGAAAACAA
GAGATGCTCTTTTTTCGCTTCTCGTTACGGCAACCGACACGATAAGTTCA
AAGGTCAACTTGAGGAAGACTGGACAGATCATATATCTACGTTCATGGAC
TACTGCTCTGATCAGAAGATCGTAGCTGATGATCGCATGACTTACTTGCA
CTATTCCCTTCATGGAGATGCACTCAAATTCTTTAAATCGGAAGTTCGTG
ACAAGATCAGATCTTGGGGAGCTGTCGTAAGTGCATTCAACGACCGCTAC
TCATCCCTGACCTGTCGAGAAGATATCTCTGGGAAACTGCGATTATTCAG
GCTACGCCAATTCATGAAGAACAATGAGACTCCTCGAGAAGCATTGGATA
GTCTCATCAAAGAGATAGACAGGCTTACTCCCATGGCTCATGTGGAAGAC
AGGACGGACCGATCGAAACGTATATTTCTCACCAGCGCCGTACAGGGGAT
ACATTGGGCTCGTCCTATTCTGTCACACGCAAATGCGGCAAGATTGACAT
ACCGCGAGGTAATGGATGGCCTTTTCAGTTCCGAAATGAATCACCGCCAG
TTTGTCCAAGAGCAGAAAGGATCGGCTCAAAGTAATCACGCAGATGGTGA
TGACATACAGTATCGTCCTCGATTGAGGAGCTCCAATGTCAACTTCTCTT
GTGACGATGAGGAACAAGTACCGAACTCCGTACATTTTACTGGACAAGGT
CGCTATGGTCGCGAACCCTCTAGCCGTACATCTTTCAAACCAGCAGCTGG
CCATCCTTCTCAGCCCAGACGGTATATGCCTGGTCAACAATTTCGAAAAC
GTTTAGAAGTACCACTAGCCCTGAAGGTCTGTTTCAACTGTGAACGGAAC
GGGTGTCGTTTATTCACGTGTCCCAAGCCCCGCAATGAAGCTCTCATTCG
CAAAAACAAACAATTTGCTCGAGATTGGCTTCGGCGTAACCGCACCAAAG
GCGTTAATCTGGTCCAAGATGTGGACGATTCCGACTTCGCTGCTCAATGC
CTGGAAACCCTCTGTGTCGAAGATGATTTCTCACCCAATGATTCTCACCC
CTTTGTGGAAGGCGGCAATACTTACGACGATCCACGCAATATATCAGATG
CCTATCACTCCACCGTACACCCCGTCCTACTCCATAATTCAATCGCTTTG
GAACAAGGGAGATGCGTTTCAGAAACTCCTGAAGACGTCGAGAGTGACCA
GGGTTTCTGA