Ggra10202.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10202.t1
Unique Name	Ggra10202.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	425

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:80704..81978 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	40483.S8EJP1
Preferred name	ARP6
PFAMs	Actin
Max annot lvl	4751\|Fungi
KEGG ko	ko:K11662
GOs	GO:0000228,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034728,GO:0040029,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0071824,GO:0071840,GO:0080090,GO:0097346,GO:0098687,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000112,GO:2000113,GO:2001141
Evalue	4.9e-75
EggNOG OGs	KOG0680@1\|root,KOG0680@2759\|Eukaryota,38D34@33154\|Opisthokonta,3NV2X@4751\|Fungi,3V0PV@5204\|Basidiomycota,227F4@155619\|Agaricomycetes,3H3UR@355688\|Agaricomycetes incertae sedis
Description	Actin
COG category	Z
BRITE	ko00000,ko03036,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10202	Ggra10202	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 80704..81978 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10202.t1.stop1	Ggra10202.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 80704..80706 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10202.t1.CDS1	Ggra10202.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 80704..81978 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10202.t1.exon1	Ggra10202.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 80704..81978 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10202.t1.start1	Ggra10202.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 81976..81978 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10202.t1	Ggra10202.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 80704..81978 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:80704..81978-
coding sequence from alignment at tig00000016_pilon:80704..81978-

mRNA sequence

>Ggra10202.t1 ID=Ggra10202.t1|Name=Ggra10202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=425bp
MGTKVVLDNGGSHIKAAKISVNDSQKMNASNKLPNALCVPNALARPAKNA
VQPAADKLGKSRRPPHFLVGREILIAPDTSGMSFRRPVDLGFVSAWDAER
DVWNSVFSTDQGIGLPKAQIASSSLIVTEQLGVPMHMRRAMDEFVFECFD
FSEYAPVPPQRLAALGAGKQTCLVLDSGFSFTTAVPIVEGMELAHCAKRL
KVGGKLLTNYLREMITYRSWNMTDETAVVNAVKERLCYLSMSFISELAAT
KKGRGITKEYVLPDLTRSMFDPVGHVLQEGEETDGTEQMLKMNNERIAIP
EILFNPSDIGLNQAGVAETIFQAVEACPENVRGDLYENIVLTGGNCLFPN
FKMRLEEELRPLVDSIYDVETVMDKDPKLTAFNGGVRAAVTESSSVQFVS
KEMFAELGSDGILRELYGDEMEIG*

spliced messenger RNA

>Ggra10202.t1 ID=Ggra10202.t1|Name=Ggra10202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1275bp|location=Sequence derived from alignment at tig00000016_pilon:80704..81978- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAACCAAAGTTGTTCTAGACAATGGCGGTAGTCATATCAAAGCAGC
CAAGATTTCTGTCAACGACAGCCAGAAGATGAACGCGAGTAACAAGCTAC
CGAACGCACTCTGTGTTCCGAATGCGCTTGCACGTCCAGCAAAGAATGCC
GTGCAACCGGCAGCGGACAAACTAGGAAAATCACGACGTCCTCCACATTT
TCTAGTCGGTCGCGAAATCCTGATTGCCCCTGATACTTCCGGCATGAGCT
TTCGGCGCCCAGTTGACCTCGGTTTCGTTAGCGCTTGGGATGCTGAGCGC
GACGTGTGGAATAGCGTATTCTCAACTGATCAGGGTATTGGACTCCCAAA
GGCACAGATTGCGAGTAGTAGTCTGATCGTGACAGAACAACTTGGCGTAC
CGATGCACATGCGACGCGCGATGGATGAGTTTGTGTTTGAGTGTTTCGAT
TTCTCTGAATATGCCCCTGTACCGCCTCAACGGCTTGCTGCTTTGGGAGC
TGGGAAGCAAACCTGTCTCGTTCTAGATTCAGGATTTTCATTTACGACAG
CTGTGCCGATTGTTGAGGGAATGGAGCTCGCTCACTGCGCGAAGAGGCTC
AAAGTCGGAGGAAAATTGCTCACAAACTACCTGAGAGAAATGATCACCTA
TCGGTCTTGGAATATGACTGATGAAACCGCCGTTGTTAATGCGGTTAAAG
AGCGCTTATGTTATCTGTCCATGTCATTCATTAGCGAACTAGCTGCTACC
AAGAAAGGAAGAGGTATCACCAAAGAATACGTTCTCCCTGATTTGACAAG
AAGCATGTTCGACCCAGTTGGCCATGTTCTCCAAGAGGGAGAAGAGACAG
ACGGGACAGAGCAAATGTTGAAGATGAACAACGAACGCATTGCGATTCCA
GAAATCTTATTCAATCCGTCAGATATCGGTCTCAATCAAGCGGGAGTCGC
GGAAACCATCTTCCAGGCAGTGGAAGCATGTCCCGAGAATGTACGAGGAG
ATTTGTACGAGAACATTGTCCTAACAGGCGGTAACTGCTTGTTTCCAAAC
TTTAAAATGCGCCTCGAGGAGGAGTTGAGGCCATTGGTGGATTCTATATA
TGACGTGGAAACTGTGATGGACAAAGACCCCAAGTTGACCGCATTCAATG
GGGGAGTACGAGCTGCTGTAACAGAATCTAGTTCAGTTCAATTTGTGTCG
AAGGAAATGTTTGCAGAGCTTGGTTCCGATGGTATTTTAAGAGAGCTATA
TGGAGATGAGATGGAGATCGGCTAG

protein sequence of Ggra10202.t1

>Ggra10202.t1 ID=Ggra10202.t1|Name=Ggra10202.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=425bp
MGTKVVLDNGGSHIKAAKISVNDSQKMNASNKLPNALCVPNALARPAKNA
VQPAADKLGKSRRPPHFLVGREILIAPDTSGMSFRRPVDLGFVSAWDAER
DVWNSVFSTDQGIGLPKAQIASSSLIVTEQLGVPMHMRRAMDEFVFECFD
FSEYAPVPPQRLAALGAGKQTCLVLDSGFSFTTAVPIVEGMELAHCAKRL
KVGGKLLTNYLREMITYRSWNMTDETAVVNAVKERLCYLSMSFISELAAT
KKGRGITKEYVLPDLTRSMFDPVGHVLQEGEETDGTEQMLKMNNERIAIP
EILFNPSDIGLNQAGVAETIFQAVEACPENVRGDLYENIVLTGGNCLFPN
FKMRLEEELRPLVDSIYDVETVMDKDPKLTAFNGGVRAAVTESSSVQFVS
KEMFAELGSDGILRELYGDEMEIG*

mRNA from alignment at tig00000016_pilon:80704..81978-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10202.t1 ID=Ggra10202.t1|Name=Ggra10202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1275bp|location=Sequence derived from alignment at tig00000016_pilon:80704..81978- (Gracilaria gracilis GNS1m male)
ATGGGAACCAAAGTTGTTCTAGACAATGGCGGTAGTCATATCAAAGCAGC
CAAGATTTCTGTCAACGACAGCCAGAAGATGAACGCGAGTAACAAGCTAC
CGAACGCACTCTGTGTTCCGAATGCGCTTGCACGTCCAGCAAAGAATGCC
GTGCAACCGGCAGCGGACAAACTAGGAAAATCACGACGTCCTCCACATTT
TCTAGTCGGTCGCGAAATCCTGATTGCCCCTGATACTTCCGGCATGAGCT
TTCGGCGCCCAGTTGACCTCGGTTTCGTTAGCGCTTGGGATGCTGAGCGC
GACGTGTGGAATAGCGTATTCTCAACTGATCAGGGTATTGGACTCCCAAA
GGCACAGATTGCGAGTAGTAGTCTGATCGTGACAGAACAACTTGGCGTAC
CGATGCACATGCGACGCGCGATGGATGAGTTTGTGTTTGAGTGTTTCGAT
TTCTCTGAATATGCCCCTGTACCGCCTCAACGGCTTGCTGCTTTGGGAGC
TGGGAAGCAAACCTGTCTCGTTCTAGATTCAGGATTTTCATTTACGACAG
CTGTGCCGATTGTTGAGGGAATGGAGCTCGCTCACTGCGCGAAGAGGCTC
AAAGTCGGAGGAAAATTGCTCACAAACTACCTGAGAGAAATGATCACCTA
TCGGTCTTGGAATATGACTGATGAAACCGCCGTTGTTAATGCGGTTAAAG
AGCGCTTATGTTATCTGTCCATGTCATTCATTAGCGAACTAGCTGCTACC
AAGAAAGGAAGAGGTATCACCAAAGAATACGTTCTCCCTGATTTGACAAG
AAGCATGTTCGACCCAGTTGGCCATGTTCTCCAAGAGGGAGAAGAGACAG
ACGGGACAGAGCAAATGTTGAAGATGAACAACGAACGCATTGCGATTCCA
GAAATCTTATTCAATCCGTCAGATATCGGTCTCAATCAAGCGGGAGTCGC
GGAAACCATCTTCCAGGCAGTGGAAGCATGTCCCGAGAATGTACGAGGAG
ATTTGTACGAGAACATTGTCCTAACAGGCGGTAACTGCTTGTTTCCAAAC
TTTAAAATGCGCCTCGAGGAGGAGTTGAGGCCATTGGTGGATTCTATATA
TGACGTGGAAACTGTGATGGACAAAGACCCCAAGTTGACCGCATTCAATG
GGGGAGTACGAGCTGCTGTAACAGAATCTAGTTCAGTTCAATTTGTGTCG
AAGGAAATGTTTGCAGAGCTTGGTTCCGATGGTATTTTAAGAGAGCTATA
TGGAGATGAGATGGAGATCGGCTAG

Coding sequence (CDS) from alignment at tig00000016_pilon:80704..81978-

>Ggra10202.t1 ID=Ggra10202.t1|Name=Ggra10202.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1275bp|location=Sequence derived from alignment at tig00000016_pilon:80704..81978- (Gracilaria gracilis GNS1m male)
ATGGGAACCAAAGTTGTTCTAGACAATGGCGGTAGTCATATCAAAGCAGC
CAAGATTTCTGTCAACGACAGCCAGAAGATGAACGCGAGTAACAAGCTAC
CGAACGCACTCTGTGTTCCGAATGCGCTTGCACGTCCAGCAAAGAATGCC
GTGCAACCGGCAGCGGACAAACTAGGAAAATCACGACGTCCTCCACATTT
TCTAGTCGGTCGCGAAATCCTGATTGCCCCTGATACTTCCGGCATGAGCT
TTCGGCGCCCAGTTGACCTCGGTTTCGTTAGCGCTTGGGATGCTGAGCGC
GACGTGTGGAATAGCGTATTCTCAACTGATCAGGGTATTGGACTCCCAAA
GGCACAGATTGCGAGTAGTAGTCTGATCGTGACAGAACAACTTGGCGTAC
CGATGCACATGCGACGCGCGATGGATGAGTTTGTGTTTGAGTGTTTCGAT
TTCTCTGAATATGCCCCTGTACCGCCTCAACGGCTTGCTGCTTTGGGAGC
TGGGAAGCAAACCTGTCTCGTTCTAGATTCAGGATTTTCATTTACGACAG
CTGTGCCGATTGTTGAGGGAATGGAGCTCGCTCACTGCGCGAAGAGGCTC
AAAGTCGGAGGAAAATTGCTCACAAACTACCTGAGAGAAATGATCACCTA
TCGGTCTTGGAATATGACTGATGAAACCGCCGTTGTTAATGCGGTTAAAG
AGCGCTTATGTTATCTGTCCATGTCATTCATTAGCGAACTAGCTGCTACC
AAGAAAGGAAGAGGTATCACCAAAGAATACGTTCTCCCTGATTTGACAAG
AAGCATGTTCGACCCAGTTGGCCATGTTCTCCAAGAGGGAGAAGAGACAG
ACGGGACAGAGCAAATGTTGAAGATGAACAACGAACGCATTGCGATTCCA
GAAATCTTATTCAATCCGTCAGATATCGGTCTCAATCAAGCGGGAGTCGC
GGAAACCATCTTCCAGGCAGTGGAAGCATGTCCCGAGAATGTACGAGGAG
ATTTGTACGAGAACATTGTCCTAACAGGCGGTAACTGCTTGTTTCCAAAC
TTTAAAATGCGCCTCGAGGAGGAGTTGAGGCCATTGGTGGATTCTATATA
TGACGTGGAAACTGTGATGGACAAAGACCCCAAGTTGACCGCATTCAATG
GGGGAGTACGAGCTGCTGTAACAGAATCTAGTTCAGTTCAATTTGTGTCG
AAGGAAATGTTTGCAGAGCTTGGTTCCGATGGTATTTTAAGAGAGCTATA
TGGAGATGAGATGGAGATCGGCTAG