Ggra10182.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10182.t1
Unique NameGgra10182.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:28698..29181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10182Ggra10182Gracilaria gracilis GNS1m malegenetig00000016_pilon 28698..29181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10182.t1Ggra10182.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 28698..29181 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10182.t1.stop1Ggra10182.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 28698..28700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10182.t1.CDS1Ggra10182.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 28698..29044 -
Ggra10182.t1.CDS2Ggra10182.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 29106..29181 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10182.t1.exon1Ggra10182.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 28698..29044 -
Ggra10182.t1.exon2Ggra10182.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 29106..29181 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10182.t1.intron1Ggra10182.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 29045..29105 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10182.t1.start1Ggra10182.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 29179..29181 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10182.t1 ID=Ggra10182.t1|Name=Ggra10182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=141bp
MWLTFLRFGLYVFEWIAAIVVWGGTADKLDPIRNCYFGNRMNCGAIVFFG
ITGWLILTVVISAALFYLIKGKYEIPRRIEASVMFGLALGWLLIAIIATV
GNPSRASDIGRSVLSSSWLNTIAHSVSGAVMTAEARKENL*
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spliced messenger RNA

>Ggra10182.t1 ID=Ggra10182.t1|Name=Ggra10182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000016_pilon:28698..29181- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCTCACCTTCCTTCGATTTGGGTTATATGTGTTCGAGTGGATCGC
CGCAATCGTTGTGTGGGGAGGAACAGCGGACAAACTGGATCCCATAAGAA
ATTGCTACTTTGGAAACAGGATGAACTGCGGTGCGATTGTGTTCTTTGGA
ATAACTGGATGGCTCATTCTCACCGTAGTAATCAGCGCGGCCTTATTCTA
CCTCATAAAGGGGAAATACGAAATCCCCCGTCGAATTGAAGCCAGTGTGA
TGTTCGGACTAGCACTGGGATGGTTATTGATTGCAATCATAGCTACTGTC
GGCAATCCATCACGTGCAAGCGATATTGGAAGGAGTGTGTTGAGTTCTTC
ATGGTTGAACACGATTGCGCACTCAGTCAGCGGCGCAGTGATGACTGCGG
AAGCTAGAAAAGAAAACCTTTGA
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protein sequence of Ggra10182.t1

>Ggra10182.t1 ID=Ggra10182.t1|Name=Ggra10182.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=141bp
MWLTFLRFGLYVFEWIAAIVVWGGTADKLDPIRNCYFGNRMNCGAIVFFG
ITGWLILTVVISAALFYLIKGKYEIPRRIEASVMFGLALGWLLIAIIATV
GNPSRASDIGRSVLSSSWLNTIAHSVSGAVMTAEARKENL*
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mRNA from alignment at tig00000016_pilon:28698..29181-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10182.t1 ID=Ggra10182.t1|Name=Ggra10182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=484bp|location=Sequence derived from alignment at tig00000016_pilon:28698..29181- (Gracilaria gracilis GNS1m male)
ATGTGGCTCACCTTCCTTCGATTTGGGTTATATGTGTTCGAGTGGATCGC
CGCAATCGTTGTGTGGGGAGGAACAGGTAAGCTTTCGATTCGCCGTTCAT
TCCGGACAAAATTTGCTTACGAGTTTCTATTTTCTAGCGGACAAACTGGA
TCCCATAAGAAATTGCTACTTTGGAAACAGGATGAACTGCGGTGCGATTG
TGTTCTTTGGAATAACTGGATGGCTCATTCTCACCGTAGTAATCAGCGCG
GCCTTATTCTACCTCATAAAGGGGAAATACGAAATCCCCCGTCGAATTGA
AGCCAGTGTGATGTTCGGACTAGCACTGGGATGGTTATTGATTGCAATCA
TAGCTACTGTCGGCAATCCATCACGTGCAAGCGATATTGGAAGGAGTGTG
TTGAGTTCTTCATGGTTGAACACGATTGCGCACTCAGTCAGCGGCGCAGT
GATGACTGCGGAAGCTAGAAAAGAAAACCTTTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:28698..29181-

>Ggra10182.t1 ID=Ggra10182.t1|Name=Ggra10182.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00000016_pilon:28698..29181- (Gracilaria gracilis GNS1m male)
ATGTGGCTCACCTTCCTTCGATTTGGGTTATATGTGTTCGAGTGGATCGC
CGCAATCGTTGTGTGGGGAGGAACAGCGGACAAACTGGATCCCATAAGAA
ATTGCTACTTTGGAAACAGGATGAACTGCGGTGCGATTGTGTTCTTTGGA
ATAACTGGATGGCTCATTCTCACCGTAGTAATCAGCGCGGCCTTATTCTA
CCTCATAAAGGGGAAATACGAAATCCCCCGTCGAATTGAAGCCAGTGTGA
TGTTCGGACTAGCACTGGGATGGTTATTGATTGCAATCATAGCTACTGTC
GGCAATCCATCACGTGCAAGCGATATTGGAAGGAGTGTGTTGAGTTCTTC
ATGGTTGAACACGATTGCGCACTCAGTCAGCGGCGCAGTGATGACTGCGG
AAGCTAGAAAAGAAAACCTTTGA
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