Ggra1015.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1015.t1
Unique Name	Ggra1015.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	489

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:537024..538490 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1015	Ggra1015	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 537024..538490 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1015.t1.start1	Ggra1015.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 537024..537026 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1015.t1.CDS1	Ggra1015.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 537024..538490 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1015.t1.exon1	Ggra1015.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 537024..538490 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1015.t1.stop1	Ggra1015.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 538488..538490 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1015.t1	Ggra1015.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 537024..538490 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:537024..538490+
coding sequence from alignment at tig00000027_pilon:537024..538490+

mRNA sequence

>Ggra1015.t1 ID=Ggra1015.t1|Name=Ggra1015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp
MREFTLFVEPDVLNVVKFFSLTFLVTPILETLLESLITSRLTLSVRTGRQ
YELFESRLGIFALHSKYAGSRKNRLWLVLCAIFVLMTELWLEFSFSSIQI
DDSQRTGVWIGPTHSKRYRAAPNASINDEPTRFLEPVSRSCVDGRRIMER
SAAVNADYSNVIAQYSLTDNFTIRTPYMVVRDSLVACDINKVVKSASFIT
PNIISVQGIEGFESRCHQLVRHSNFWFKLLRNESFRLQTTFSFEGTSLQA
FVAEQTVCVELGNDARIPRQVCALSDGSRIAIGIAHKMESLLCIQLLLSG
EAVSGLHDKSRRVRLLAYVAEKRLFNPAASKEVEYLIQKTALVQVAMVAI
AVANEEGVVGLDEARSVRQIALPQSRQVTTISALGLVPVSILLGTALLLA
VWDVIVRRKIAKVVRGMGGVRKSQMRVDLSKQWVRERVGEDLKRLGADWS
GRKDVEVRLVTEGGRLRLRVLPERASSDVDDGVGDRTE*

spliced messenger RNA

>Ggra1015.t1 ID=Ggra1015.t1|Name=Ggra1015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00000027_pilon:537024..538490+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGAATTCACGCTATTCGTCGAGCCAGATGTTTTGAACGTTGTCAA
ATTCTTCTCGTTGACATTCCTAGTGACACCAATCTTGGAGACGCTTCTTG
AATCACTCATTACTTCAAGGCTAACTCTCAGCGTTCGAACTGGAAGGCAG
TATGAACTATTCGAATCGCGTTTGGGAATATTTGCTTTGCACTCCAAGTA
CGCTGGATCTCGAAAGAACCGACTATGGTTGGTGCTGTGCGCCATATTTG
TTCTCATGACAGAGCTGTGGTTGGAGTTTTCGTTCTCGTCTATTCAGATA
GATGACTCTCAAAGAACAGGTGTGTGGATAGGGCCGACACACAGCAAGCG
CTATCGGGCTGCTCCAAACGCCAGTATCAATGATGAACCCACTCGCTTTC
TTGAGCCTGTATCAAGAAGTTGTGTCGACGGGAGGCGTATCATGGAACGC
TCAGCCGCTGTAAATGCCGACTATTCCAACGTCATCGCTCAGTATTCACT
CACGGATAATTTCACGATTCGAACACCGTATATGGTCGTGCGAGACTCGC
TTGTGGCGTGCGATATCAACAAGGTGGTAAAAAGCGCATCGTTCATCACC
CCCAACATAATTTCCGTTCAGGGCATAGAAGGCTTCGAGTCTCGCTGTCA
TCAACTTGTAAGGCATTCGAACTTCTGGTTCAAATTGTTACGCAACGAGA
GCTTCAGGCTGCAGACAACATTTTCTTTTGAAGGCACAAGCCTGCAAGCT
TTTGTCGCGGAGCAAACGGTTTGCGTGGAACTGGGCAATGATGCACGTAT
CCCGAGGCAGGTATGTGCGTTGTCGGATGGTTCACGAATAGCGATAGGGA
TAGCCCACAAGATGGAAAGTCTTCTGTGTATCCAACTGTTGCTCTCGGGC
GAAGCTGTATCAGGTCTTCACGACAAGAGCAGAAGAGTGCGCCTCCTGGC
GTACGTGGCTGAAAAGAGGTTGTTCAATCCGGCGGCCTCAAAAGAGGTTG
AGTACCTGATTCAGAAAACTGCGCTGGTGCAAGTGGCCATGGTGGCAATT
GCGGTGGCGAACGAGGAAGGAGTGGTTGGACTCGATGAGGCCAGATCTGT
GCGCCAAATTGCACTGCCGCAATCCCGACAGGTGACGACAATAAGCGCGC
TTGGATTGGTGCCAGTGTCCATTCTGTTGGGCACGGCTCTACTGCTGGCT
GTGTGGGACGTGATTGTGCGAAGGAAGATTGCAAAAGTGGTCCGCGGGAT
GGGTGGCGTTCGTAAGTCACAGATGCGGGTGGATTTGTCGAAGCAATGGG
TGAGGGAGCGAGTGGGGGAGGACTTGAAGAGGCTGGGAGCTGATTGGAGC
GGGCGGAAGGATGTAGAAGTACGGCTTGTTACTGAGGGCGGGCGCTTGCG
CTTACGCGTGTTGCCGGAGAGAGCGTCGAGCGATGTTGATGATGGTgttg
gcgatcgtacagagtag

protein sequence of Ggra1015.t1

>Ggra1015.t1 ID=Ggra1015.t1|Name=Ggra1015.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=489bp
MREFTLFVEPDVLNVVKFFSLTFLVTPILETLLESLITSRLTLSVRTGRQ
YELFESRLGIFALHSKYAGSRKNRLWLVLCAIFVLMTELWLEFSFSSIQI
DDSQRTGVWIGPTHSKRYRAAPNASINDEPTRFLEPVSRSCVDGRRIMER
SAAVNADYSNVIAQYSLTDNFTIRTPYMVVRDSLVACDINKVVKSASFIT
PNIISVQGIEGFESRCHQLVRHSNFWFKLLRNESFRLQTTFSFEGTSLQA
FVAEQTVCVELGNDARIPRQVCALSDGSRIAIGIAHKMESLLCIQLLLSG
EAVSGLHDKSRRVRLLAYVAEKRLFNPAASKEVEYLIQKTALVQVAMVAI
AVANEEGVVGLDEARSVRQIALPQSRQVTTISALGLVPVSILLGTALLLA
VWDVIVRRKIAKVVRGMGGVRKSQMRVDLSKQWVRERVGEDLKRLGADWS
GRKDVEVRLVTEGGRLRLRVLPERASSDVDDGVGDRTE*

mRNA from alignment at tig00000027_pilon:537024..538490+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1015.t1 ID=Ggra1015.t1|Name=Ggra1015.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00000027_pilon:537024..538490+ (Gracilaria gracilis GNS1m male)
ATGAGGGAATTCACGCTATTCGTCGAGCCAGATGTTTTGAACGTTGTCAA
ATTCTTCTCGTTGACATTCCTAGTGACACCAATCTTGGAGACGCTTCTTG
AATCACTCATTACTTCAAGGCTAACTCTCAGCGTTCGAACTGGAAGGCAG
TATGAACTATTCGAATCGCGTTTGGGAATATTTGCTTTGCACTCCAAGTA
CGCTGGATCTCGAAAGAACCGACTATGGTTGGTGCTGTGCGCCATATTTG
TTCTCATGACAGAGCTGTGGTTGGAGTTTTCGTTCTCGTCTATTCAGATA
GATGACTCTCAAAGAACAGGTGTGTGGATAGGGCCGACACACAGCAAGCG
CTATCGGGCTGCTCCAAACGCCAGTATCAATGATGAACCCACTCGCTTTC
TTGAGCCTGTATCAAGAAGTTGTGTCGACGGGAGGCGTATCATGGAACGC
TCAGCCGCTGTAAATGCCGACTATTCCAACGTCATCGCTCAGTATTCACT
CACGGATAATTTCACGATTCGAACACCGTATATGGTCGTGCGAGACTCGC
TTGTGGCGTGCGATATCAACAAGGTGGTAAAAAGCGCATCGTTCATCACC
CCCAACATAATTTCCGTTCAGGGCATAGAAGGCTTCGAGTCTCGCTGTCA
TCAACTTGTAAGGCATTCGAACTTCTGGTTCAAATTGTTACGCAACGAGA
GCTTCAGGCTGCAGACAACATTTTCTTTTGAAGGCACAAGCCTGCAAGCT
TTTGTCGCGGAGCAAACGGTTTGCGTGGAACTGGGCAATGATGCACGTAT
CCCGAGGCAGGTATGTGCGTTGTCGGATGGTTCACGAATAGCGATAGGGA
TAGCCCACAAGATGGAAAGTCTTCTGTGTATCCAACTGTTGCTCTCGGGC
GAAGCTGTATCAGGTCTTCACGACAAGAGCAGAAGAGTGCGCCTCCTGGC
GTACGTGGCTGAAAAGAGGTTGTTCAATCCGGCGGCCTCAAAAGAGGTTG
AGTACCTGATTCAGAAAACTGCGCTGGTGCAAGTGGCCATGGTGGCAATT
GCGGTGGCGAACGAGGAAGGAGTGGTTGGACTCGATGAGGCCAGATCTGT
GCGCCAAATTGCACTGCCGCAATCCCGACAGGTGACGACAATAAGCGCGC
TTGGATTGGTGCCAGTGTCCATTCTGTTGGGCACGGCTCTACTGCTGGCT
GTGTGGGACGTGATTGTGCGAAGGAAGATTGCAAAAGTGGTCCGCGGGAT
GGGTGGCGTTCGTAAGTCACAGATGCGGGTGGATTTGTCGAAGCAATGGG
TGAGGGAGCGAGTGGGGGAGGACTTGAAGAGGCTGGGAGCTGATTGGAGC
GGGCGGAAGGATGTAGAAGTACGGCTTGTTACTGAGGGCGGGCGCTTGCG
CTTACGCGTGTTGCCGGAGAGAGCGTCGAGCGATGTTGATGATGGTgttg
gcgatcgtacagagtag

Coding sequence (CDS) from alignment at tig00000027_pilon:537024..538490+

>Ggra1015.t1 ID=Ggra1015.t1|Name=Ggra1015.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1467bp|location=Sequence derived from alignment at tig00000027_pilon:537024..538490+ (Gracilaria gracilis GNS1m male)
ATGAGGGAATTCACGCTATTCGTCGAGCCAGATGTTTTGAACGTTGTCAA
ATTCTTCTCGTTGACATTCCTAGTGACACCAATCTTGGAGACGCTTCTTG
AATCACTCATTACTTCAAGGCTAACTCTCAGCGTTCGAACTGGAAGGCAG
TATGAACTATTCGAATCGCGTTTGGGAATATTTGCTTTGCACTCCAAGTA
CGCTGGATCTCGAAAGAACCGACTATGGTTGGTGCTGTGCGCCATATTTG
TTCTCATGACAGAGCTGTGGTTGGAGTTTTCGTTCTCGTCTATTCAGATA
GATGACTCTCAAAGAACAGGTGTGTGGATAGGGCCGACACACAGCAAGCG
CTATCGGGCTGCTCCAAACGCCAGTATCAATGATGAACCCACTCGCTTTC
TTGAGCCTGTATCAAGAAGTTGTGTCGACGGGAGGCGTATCATGGAACGC
TCAGCCGCTGTAAATGCCGACTATTCCAACGTCATCGCTCAGTATTCACT
CACGGATAATTTCACGATTCGAACACCGTATATGGTCGTGCGAGACTCGC
TTGTGGCGTGCGATATCAACAAGGTGGTAAAAAGCGCATCGTTCATCACC
CCCAACATAATTTCCGTTCAGGGCATAGAAGGCTTCGAGTCTCGCTGTCA
TCAACTTGTAAGGCATTCGAACTTCTGGTTCAAATTGTTACGCAACGAGA
GCTTCAGGCTGCAGACAACATTTTCTTTTGAAGGCACAAGCCTGCAAGCT
TTTGTCGCGGAGCAAACGGTTTGCGTGGAACTGGGCAATGATGCACGTAT
CCCGAGGCAGGTATGTGCGTTGTCGGATGGTTCACGAATAGCGATAGGGA
TAGCCCACAAGATGGAAAGTCTTCTGTGTATCCAACTGTTGCTCTCGGGC
GAAGCTGTATCAGGTCTTCACGACAAGAGCAGAAGAGTGCGCCTCCTGGC
GTACGTGGCTGAAAAGAGGTTGTTCAATCCGGCGGCCTCAAAAGAGGTTG
AGTACCTGATTCAGAAAACTGCGCTGGTGCAAGTGGCCATGGTGGCAATT
GCGGTGGCGAACGAGGAAGGAGTGGTTGGACTCGATGAGGCCAGATCTGT
GCGCCAAATTGCACTGCCGCAATCCCGACAGGTGACGACAATAAGCGCGC
TTGGATTGGTGCCAGTGTCCATTCTGTTGGGCACGGCTCTACTGCTGGCT
GTGTGGGACGTGATTGTGCGAAGGAAGATTGCAAAAGTGGTCCGCGGGAT
GGGTGGCGTTCGTAAGTCACAGATGCGGGTGGATTTGTCGAAGCAATGGG
TGAGGGAGCGAGTGGGGGAGGACTTGAAGAGGCTGGGAGCTGATTGGAGC
GGGCGGAAGGATGTAGAAGTACGGCTTGTTACTGAGGGCGGGCGCTTGCG
CTTACGCGTGTTGCCGGAGAGAGCGTCGAGCGATGTTGATGATGGTgttg
gcgatcgtacagagtag