Ggra10122.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10122.t1
Unique Name	Ggra10122.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	756

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000113_pilon	contig	tig00000113_pilon:241685..243952 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10122	Ggra10122	Gracilaria gracilis GNS1m male	gene	tig00000113_pilon 241685..243952 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10122.t1.start1	Ggra10122.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000113_pilon 241685..241687 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10122.t1.CDS1	Ggra10122.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000113_pilon 241685..243952 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10122.t1.exon1	Ggra10122.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000113_pilon 241685..243952 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10122.t1.stop1	Ggra10122.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000113_pilon 243950..243952 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10122.t1	Ggra10122.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000113_pilon 241685..243952 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000113_pilon:241685..243952+
coding sequence from alignment at tig00000113_pilon:241685..243952+

mRNA sequence

>Ggra10122.t1 ID=Ggra10122.t1|Name=Ggra10122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp
MAGTDFICVYCQETLQEGEAVRFIEECQHFCHVTCQPPARCPFDDQHLDL
HAASNAPSLPFSLECGSRFERLREKRSHAASCRNIAWILLHERNKSEKAL
LWLNKAIKKTPPSANALLDLADWYERGFAVICDTSHARDLRKKAQILLDD
LNERNERFISNGEEGQVQTNQAQEDPAHDYQPDDGHPASSLQQQSKPYGQ
QPSSQVPHNPEYSLPGHTAVDDHLSRKDPQLNPQVATETNLSDVSSAVSS
EGREMNAQGLRTDTLVHKASHADIAYPGEVNNGEHMNQSLVTPEHGPRGC
EASNDSRSLGGAQRNVEESAFYPQKDDHLSPRDDVAACTSVRKQQHMPHV
GLGSRPSLNPLHNPKSTNRKDGEWESHFTADQGSGSAADPIQDASSSQWT
PTWPMNEYRELSESFSSEQNDEHRFARPLTEEKHGEVPEPLNTTARTEMQ
GSWTSVPGRASQSGGTVGSGYESPLIPDRNNQANHIRPDISSSIDGTHVS
PGAPPVAEPITGEPPGLHIFMARLKQARMSGEPLSSGSEYVRRDCAEDDT
PAFSRREGEYARDSNEYASDRHYYSTGTPSFEKESYPPPPGSVQSDGARA
SASTASVQFVFPAVGKFRDMFGRIPEVGQETVSNYVEAAKRLRKLKEKIM
ELQERRESYWHRQAANVVVAVPAAVFTSGFSTIASGSALIHQRNRLEQLK
KCVRDIIKQINEIRSSFAEFEDTPEWKAAEDSVTLGRKVFGRRSGVKRSE
LEGGL*

spliced messenger RNA

>Ggra10122.t1 ID=Ggra10122.t1|Name=Ggra10122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2268bp|location=Sequence derived from alignment at tig00000113_pilon:241685..243952+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGGACCGACTTCATCTGCGTTTACTGCCAGGAAACACTTCAAGA
GGGGGAGGCCGTCCGCTTCATCGAGGAGTGCCAGCACTTCTGTCATGTCA
CATGCCAGCCCCCAGCACGCTGTCCGTTCGACGACCAACATCTCGACCTT
CACGCAGCCTCCAACGCACCCTCGTTGCCGTTCTCATTGGAATGCGGCTC
ACGTTTCGAGCGCCTTCGCGAGAAGCGCTCTCACGCCGCCTCGTGCCGCA
ACATTGCCTGGATTCTGTTGCATGAGCGGAACAAATCAGAAAAGGCCCTC
TTGTGGCTCAACAAAGCCATCAAGAAGACCCCACCCTCCGCCAACGCGCT
TCTAGACCTCGCCGACTGGTACGAAAGAGGTTTTGCCGTAATCTGCGATA
CTTCTCACGCACGTGATTTGCGAAAGAAGGCACAGATACTGCTTGACGAT
CTGAACGAGCGAAACGAACGCTTTATCAGTAACGGCGAAGAAGGGCAAGT
CCAAACCAACCAAGCCCAGGAAGACCCAGCTCACGATTACCAACCCGATG
ATGGCCACCCCGCTTCTTCTCTCCAACAACAATCAAAGCCATATGGCCAG
CAACCCAGTTCCCAAGTCCCGCACAATCCTGAATACTCTCTGCCTGGGCA
TACTGCGGTAGACGATCACCTTTCGCGGAAAGATCCTCAACTCAACCCCC
AAGTAGCGACAGAAACTAATTTGAGCGATGTCTCTTCTGCAGTTTCTAGC
GAAGGAAGGGAAATGAATGCTCAGGGCTTGCGGACAGATACTCTCGTTCA
TAAAGCATCCCATGCCGACATTGCGTATCCGGGTGAAGTCAATAATGGTG
AGCATATGAATCAAAGTCTGGTCACTCCCGAACATGGACCCAGAGGCTGT
GAGGCCAGTAATGATTCCCGCTCTTTGGGGGGCGCCCAGCGTAATGTCGA
AGAAAGTGCGTTTTATCCCCAAAAAGATGATCATCTTAGTCCAAGAGACG
ACGTTGCGGCTTGCACATCAGTTAGAAAGCAACAGCACATGCCCCATGTG
GGCTTGGGTAGTCGCCCTTCTCTAAATCCTCTTCACAATCCTAAATCTAC
AAACCGAAAGGATGGTGAATGGGAATCACATTTCACGGCTGATCAAGGGA
GTGGCTCCGCAGCAGATCCGATTCAGGATGCTTCATCTAGCCAATGGACT
CCAACTTGGCCTATGAACGAATACAGAGAACTCTCAGAGTCCTTCAGTTC
CGAGCAAAACGATGAACACCGTTTTGCGAGACCGTTGACGGAAGAGAAAC
ATGGGGAAGTTCCTGAGCCATTGAATACTACCGCAAGAACCGAAATGCAG
GGCTCCTGGACCTCTGTCCCGGGACGAGCATCACAGTCAGGGGGCACTGT
AGGATCTGGTTATGAGAGTCCTTTGATTCCGGACAGGAATAACCAAGCCA
ATCATATCCGGCCTGATATTTCTTCATCAATCGACGGAACACATGTTTCG
CCTGGGGCTCCTCCGGTAGCGGAGCCAATAACTGGAGAACCACCAGGACT
TCATATTTTTATGGCCCGATTGAAACAGGCAAGAATGAGTGGAGAACCGT
TATCATCAGGCTCTGAATATGTTCGCAGAGATTGTGCCGAAGACGACACT
CCGGCTTTCTCACGGAGGGAAGGCGAATATGCACGGGATTCAAATGAATA
CGCATCTGATAGGCACTATTACTCGACTGGAACTCCAAGTTTCGAGAAGG
AATCATACCCGCCCCCGCCTGGGAGTGTGCAAAGCGATGGAGCACGTGCA
AGTGCGTCCACGGCTTCTGTTCAGTTCGTATTTCCTGCGGTAGGAAAGTT
CAGGGACATGTTTGGGCGAATTCCAGAGGTGGGTCAAGAGACGGTGAGCA
ACTACGTGGAAGCTGCAAAGCGACTGCGAAAACTGAAGGAAAAGATCATG
GAACTTCAGGAGAGGCGTGAATCATACTGGCATCGACAGGCAGCAAATGT
TGTTGTAGCGGTACCTGCTGCTGTGTTTACCTCCGGATTCTCAACAATAG
CGAGCGGATCGGCACTCATCCATCAGAGAAACCGACTGGAGCAACTGAAG
AAATGCGTTCGAGACATCATCAAACAGATCAATGAGATCCGGTCATCGTT
CGCTGAATTCGAAGACACACCTGAATGGAAGGCTGCGGAAGACTCTGTGA
CACTTGGGAGGAAGGTGTTTGGACGGCGCTCTGGAGTTAAGAGATCAGAG
CTTGAGGGAGGTTTGTAA

protein sequence of Ggra10122.t1

>Ggra10122.t1 ID=Ggra10122.t1|Name=Ggra10122.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=756bp
MAGTDFICVYCQETLQEGEAVRFIEECQHFCHVTCQPPARCPFDDQHLDL
HAASNAPSLPFSLECGSRFERLREKRSHAASCRNIAWILLHERNKSEKAL
LWLNKAIKKTPPSANALLDLADWYERGFAVICDTSHARDLRKKAQILLDD
LNERNERFISNGEEGQVQTNQAQEDPAHDYQPDDGHPASSLQQQSKPYGQ
QPSSQVPHNPEYSLPGHTAVDDHLSRKDPQLNPQVATETNLSDVSSAVSS
EGREMNAQGLRTDTLVHKASHADIAYPGEVNNGEHMNQSLVTPEHGPRGC
EASNDSRSLGGAQRNVEESAFYPQKDDHLSPRDDVAACTSVRKQQHMPHV
GLGSRPSLNPLHNPKSTNRKDGEWESHFTADQGSGSAADPIQDASSSQWT
PTWPMNEYRELSESFSSEQNDEHRFARPLTEEKHGEVPEPLNTTARTEMQ
GSWTSVPGRASQSGGTVGSGYESPLIPDRNNQANHIRPDISSSIDGTHVS
PGAPPVAEPITGEPPGLHIFMARLKQARMSGEPLSSGSEYVRRDCAEDDT
PAFSRREGEYARDSNEYASDRHYYSTGTPSFEKESYPPPPGSVQSDGARA
SASTASVQFVFPAVGKFRDMFGRIPEVGQETVSNYVEAAKRLRKLKEKIM
ELQERRESYWHRQAANVVVAVPAAVFTSGFSTIASGSALIHQRNRLEQLK
KCVRDIIKQINEIRSSFAEFEDTPEWKAAEDSVTLGRKVFGRRSGVKRSE
LEGGL*

mRNA from alignment at tig00000113_pilon:241685..243952+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10122.t1 ID=Ggra10122.t1|Name=Ggra10122.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2268bp|location=Sequence derived from alignment at tig00000113_pilon:241685..243952+ (Gracilaria gracilis GNS1m male)
ATGGCCGGGACCGACTTCATCTGCGTTTACTGCCAGGAAACACTTCAAGA
GGGGGAGGCCGTCCGCTTCATCGAGGAGTGCCAGCACTTCTGTCATGTCA
CATGCCAGCCCCCAGCACGCTGTCCGTTCGACGACCAACATCTCGACCTT
CACGCAGCCTCCAACGCACCCTCGTTGCCGTTCTCATTGGAATGCGGCTC
ACGTTTCGAGCGCCTTCGCGAGAAGCGCTCTCACGCCGCCTCGTGCCGCA
ACATTGCCTGGATTCTGTTGCATGAGCGGAACAAATCAGAAAAGGCCCTC
TTGTGGCTCAACAAAGCCATCAAGAAGACCCCACCCTCCGCCAACGCGCT
TCTAGACCTCGCCGACTGGTACGAAAGAGGTTTTGCCGTAATCTGCGATA
CTTCTCACGCACGTGATTTGCGAAAGAAGGCACAGATACTGCTTGACGAT
CTGAACGAGCGAAACGAACGCTTTATCAGTAACGGCGAAGAAGGGCAAGT
CCAAACCAACCAAGCCCAGGAAGACCCAGCTCACGATTACCAACCCGATG
ATGGCCACCCCGCTTCTTCTCTCCAACAACAATCAAAGCCATATGGCCAG
CAACCCAGTTCCCAAGTCCCGCACAATCCTGAATACTCTCTGCCTGGGCA
TACTGCGGTAGACGATCACCTTTCGCGGAAAGATCCTCAACTCAACCCCC
AAGTAGCGACAGAAACTAATTTGAGCGATGTCTCTTCTGCAGTTTCTAGC
GAAGGAAGGGAAATGAATGCTCAGGGCTTGCGGACAGATACTCTCGTTCA
TAAAGCATCCCATGCCGACATTGCGTATCCGGGTGAAGTCAATAATGGTG
AGCATATGAATCAAAGTCTGGTCACTCCCGAACATGGACCCAGAGGCTGT
GAGGCCAGTAATGATTCCCGCTCTTTGGGGGGCGCCCAGCGTAATGTCGA
AGAAAGTGCGTTTTATCCCCAAAAAGATGATCATCTTAGTCCAAGAGACG
ACGTTGCGGCTTGCACATCAGTTAGAAAGCAACAGCACATGCCCCATGTG
GGCTTGGGTAGTCGCCCTTCTCTAAATCCTCTTCACAATCCTAAATCTAC
AAACCGAAAGGATGGTGAATGGGAATCACATTTCACGGCTGATCAAGGGA
GTGGCTCCGCAGCAGATCCGATTCAGGATGCTTCATCTAGCCAATGGACT
CCAACTTGGCCTATGAACGAATACAGAGAACTCTCAGAGTCCTTCAGTTC
CGAGCAAAACGATGAACACCGTTTTGCGAGACCGTTGACGGAAGAGAAAC
ATGGGGAAGTTCCTGAGCCATTGAATACTACCGCAAGAACCGAAATGCAG
GGCTCCTGGACCTCTGTCCCGGGACGAGCATCACAGTCAGGGGGCACTGT
AGGATCTGGTTATGAGAGTCCTTTGATTCCGGACAGGAATAACCAAGCCA
ATCATATCCGGCCTGATATTTCTTCATCAATCGACGGAACACATGTTTCG
CCTGGGGCTCCTCCGGTAGCGGAGCCAATAACTGGAGAACCACCAGGACT
TCATATTTTTATGGCCCGATTGAAACAGGCAAGAATGAGTGGAGAACCGT
TATCATCAGGCTCTGAATATGTTCGCAGAGATTGTGCCGAAGACGACACT
CCGGCTTTCTCACGGAGGGAAGGCGAATATGCACGGGATTCAAATGAATA
CGCATCTGATAGGCACTATTACTCGACTGGAACTCCAAGTTTCGAGAAGG
AATCATACCCGCCCCCGCCTGGGAGTGTGCAAAGCGATGGAGCACGTGCA
AGTGCGTCCACGGCTTCTGTTCAGTTCGTATTTCCTGCGGTAGGAAAGTT
CAGGGACATGTTTGGGCGAATTCCAGAGGTGGGTCAAGAGACGGTGAGCA
ACTACGTGGAAGCTGCAAAGCGACTGCGAAAACTGAAGGAAAAGATCATG
GAACTTCAGGAGAGGCGTGAATCATACTGGCATCGACAGGCAGCAAATGT
TGTTGTAGCGGTACCTGCTGCTGTGTTTACCTCCGGATTCTCAACAATAG
CGAGCGGATCGGCACTCATCCATCAGAGAAACCGACTGGAGCAACTGAAG
AAATGCGTTCGAGACATCATCAAACAGATCAATGAGATCCGGTCATCGTT
CGCTGAATTCGAAGACACACCTGAATGGAAGGCTGCGGAAGACTCTGTGA
CACTTGGGAGGAAGGTGTTTGGACGGCGCTCTGGAGTTAAGAGATCAGAG
CTTGAGGGAGGTTTGTAA

Coding sequence (CDS) from alignment at tig00000113_pilon:241685..243952+

>Ggra10122.t1 ID=Ggra10122.t1|Name=Ggra10122.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2268bp|location=Sequence derived from alignment at tig00000113_pilon:241685..243952+ (Gracilaria gracilis GNS1m male)
ATGGCCGGGACCGACTTCATCTGCGTTTACTGCCAGGAAACACTTCAAGA
GGGGGAGGCCGTCCGCTTCATCGAGGAGTGCCAGCACTTCTGTCATGTCA
CATGCCAGCCCCCAGCACGCTGTCCGTTCGACGACCAACATCTCGACCTT
CACGCAGCCTCCAACGCACCCTCGTTGCCGTTCTCATTGGAATGCGGCTC
ACGTTTCGAGCGCCTTCGCGAGAAGCGCTCTCACGCCGCCTCGTGCCGCA
ACATTGCCTGGATTCTGTTGCATGAGCGGAACAAATCAGAAAAGGCCCTC
TTGTGGCTCAACAAAGCCATCAAGAAGACCCCACCCTCCGCCAACGCGCT
TCTAGACCTCGCCGACTGGTACGAAAGAGGTTTTGCCGTAATCTGCGATA
CTTCTCACGCACGTGATTTGCGAAAGAAGGCACAGATACTGCTTGACGAT
CTGAACGAGCGAAACGAACGCTTTATCAGTAACGGCGAAGAAGGGCAAGT
CCAAACCAACCAAGCCCAGGAAGACCCAGCTCACGATTACCAACCCGATG
ATGGCCACCCCGCTTCTTCTCTCCAACAACAATCAAAGCCATATGGCCAG
CAACCCAGTTCCCAAGTCCCGCACAATCCTGAATACTCTCTGCCTGGGCA
TACTGCGGTAGACGATCACCTTTCGCGGAAAGATCCTCAACTCAACCCCC
AAGTAGCGACAGAAACTAATTTGAGCGATGTCTCTTCTGCAGTTTCTAGC
GAAGGAAGGGAAATGAATGCTCAGGGCTTGCGGACAGATACTCTCGTTCA
TAAAGCATCCCATGCCGACATTGCGTATCCGGGTGAAGTCAATAATGGTG
AGCATATGAATCAAAGTCTGGTCACTCCCGAACATGGACCCAGAGGCTGT
GAGGCCAGTAATGATTCCCGCTCTTTGGGGGGCGCCCAGCGTAATGTCGA
AGAAAGTGCGTTTTATCCCCAAAAAGATGATCATCTTAGTCCAAGAGACG
ACGTTGCGGCTTGCACATCAGTTAGAAAGCAACAGCACATGCCCCATGTG
GGCTTGGGTAGTCGCCCTTCTCTAAATCCTCTTCACAATCCTAAATCTAC
AAACCGAAAGGATGGTGAATGGGAATCACATTTCACGGCTGATCAAGGGA
GTGGCTCCGCAGCAGATCCGATTCAGGATGCTTCATCTAGCCAATGGACT
CCAACTTGGCCTATGAACGAATACAGAGAACTCTCAGAGTCCTTCAGTTC
CGAGCAAAACGATGAACACCGTTTTGCGAGACCGTTGACGGAAGAGAAAC
ATGGGGAAGTTCCTGAGCCATTGAATACTACCGCAAGAACCGAAATGCAG
GGCTCCTGGACCTCTGTCCCGGGACGAGCATCACAGTCAGGGGGCACTGT
AGGATCTGGTTATGAGAGTCCTTTGATTCCGGACAGGAATAACCAAGCCA
ATCATATCCGGCCTGATATTTCTTCATCAATCGACGGAACACATGTTTCG
CCTGGGGCTCCTCCGGTAGCGGAGCCAATAACTGGAGAACCACCAGGACT
TCATATTTTTATGGCCCGATTGAAACAGGCAAGAATGAGTGGAGAACCGT
TATCATCAGGCTCTGAATATGTTCGCAGAGATTGTGCCGAAGACGACACT
CCGGCTTTCTCACGGAGGGAAGGCGAATATGCACGGGATTCAAATGAATA
CGCATCTGATAGGCACTATTACTCGACTGGAACTCCAAGTTTCGAGAAGG
AATCATACCCGCCCCCGCCTGGGAGTGTGCAAAGCGATGGAGCACGTGCA
AGTGCGTCCACGGCTTCTGTTCAGTTCGTATTTCCTGCGGTAGGAAAGTT
CAGGGACATGTTTGGGCGAATTCCAGAGGTGGGTCAAGAGACGGTGAGCA
ACTACGTGGAAGCTGCAAAGCGACTGCGAAAACTGAAGGAAAAGATCATG
GAACTTCAGGAGAGGCGTGAATCATACTGGCATCGACAGGCAGCAAATGT
TGTTGTAGCGGTACCTGCTGCTGTGTTTACCTCCGGATTCTCAACAATAG
CGAGCGGATCGGCACTCATCCATCAGAGAAACCGACTGGAGCAACTGAAG
AAATGCGTTCGAGACATCATCAAACAGATCAATGAGATCCGGTCATCGTT
CGCTGAATTCGAAGACACACCTGAATGGAAGGCTGCGGAAGACTCTGTGA
CACTTGGGAGGAAGGTGTTTGGACGGCGCTCTGGAGTTAAGAGATCAGAG
CTTGAGGGAGGTTTGTAA