Ggra10118.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10118.t1
Unique Name	Ggra10118.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000113_pilon	contig	tig00000113_pilon:228218..229273 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4565.Traes_6AL_18EFECE1A.1
PFAMs	Lectin_legB,Pkinase,Pkinase_Tyr
Max annot lvl	35493\|Streptophyta
GOs	GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
Evalue	1.47e-05
EggNOG OGs	COG0515@1\|root,2QT06@2759\|Eukaryota,37QFR@33090\|Viridiplantae,3GCKK@35493\|Streptophyta,3KXS8@4447\|Liliopsida,3IBK9@38820\|Poales
Description	Legume lectin domain
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10118	Ggra10118	Gracilaria gracilis GNS1m male	gene	tig00000113_pilon 228218..229273 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10118.t1.start1	Ggra10118.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000113_pilon 228218..228220 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10118.t1.CDS1	Ggra10118.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000113_pilon 228218..229273 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10118.t1.exon1	Ggra10118.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000113_pilon 228218..229273 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10118.t1.stop1	Ggra10118.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000113_pilon 229271..229273 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10118.t1	Ggra10118.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000113_pilon 228218..229273 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000113_pilon:228218..229273+
coding sequence from alignment at tig00000113_pilon:228218..229273+

mRNA sequence

>Ggra10118.t1 ID=Ggra10118.t1|Name=Ggra10118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=352bp
MAPTFVLLLSILLQRALAQQCSAAISEVIFTDLTILNSAYTSDASFSGDA
SASLAGTVLTSTAVASYGGFFFSATDFQATGGFSLKFSIQSNDSSLGVGD
SFEAVIAASSSQSFFPPPFADGNTGSGQAGWSRQNAFVVEFDSYDSGADE
QDSSSGHVAIYLSGSEICKTDTSFVFGDGSQYTVWLDYNGFATQAYVRVS
TDGTRPTTAVLDCDVDIWNILNINTAHSVGFSAYNPSDQTGALHTLVDSI
SVADGYKPYDDDNCASYDRCSLRSTAALCIDNIAGTTCQVIQCEPSYVWD
VSGSNCCAFVEREAFVIGDGIDVSSLQIGDSVACQATRKIVAYLTDQSNC
S*

spliced messenger RNA

>Ggra10118.t1 ID=Ggra10118.t1|Name=Ggra10118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000113_pilon:228218..229273+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCGACTTTTGTCCTACTCCTCTCCATTCTGCTGCAACGAGCATT
GGCCCAACAGTGCTCTGCGGCCATCTCCGAGGTCATCTTCACCGACCTCA
CCATCCTCAACTCCGCCTATACCTCTGATGCGTCATTCTCAGGTGATGCT
TCAGCATCTCTGGCTGGCACCGTGCTAACGTCCACCGCAGTGGCTTCTTA
TGGAGGTTTCTTCTTTAGTGCAACAGACTTCCAAGCCACCGGTGGATTTT
CTCTCAAGTTTAGCATCCAGTCGAACGATTCTTCACTGGGAGTAGGTGAT
TCCTTTGAAGCAGTCATTGCCGCAAGTTCTTCTCAGAGTTTCTTTCCGCC
GCCTTTCGCAGATGGAAACACTGGCTCTGGACAGGCTGGATGGTCCAGAC
AGAACGCATTTGTCGTAGAATTTGATTCTTACGATTCCGGTGCCGACGAG
CAGGATTCGTCTTCTGGGCACGTTGCAATATATCTTTCGGGCTCAGAGAT
ATGCAAGACTGACACATCCTTTGTCTTTGGGGATGGATCTCAATACACCG
TATGGCTCGATTACAACGGATTTGCAACCCAGGCTTACGTGCGCGTCTCT
ACTGATGGAACACGTCCCACAACAGCAGTCCTTGACTGTGATGTTGACAT
ATGGAATATACTTAACATTAACACTGCCCACTCTGTTGGGTTTTCTGCAT
ACAACCCATCCGACCAAACTGGAGCGCTTCATACTCTAGTCGATTCTATT
AGTGTTGCTGACGGATACAAACCGTACGACGATGACAACTGCGCAAGCTA
CGACCGATGCTCCCTAAGATCGACTGCGGCACTTTGTATTGATAATATTG
CTGGAACCACTTGTCAAGTCATTCAGTGTGAACCAAGTTATGTTTGGGAT
GTGTCCGGATCTAACTGTTGTGCATTTGTTGAACGGGAAGCATTTGTCAT
TGGGGATGGGATCGACGTCTCTTCTCTTCAAATAGGTGATTCTGTTGCTT
GTCAGGCGACGAGGAAGATTGTTGCGTATCTGACAGATCAGAGTAACTGT
TCTTAA

protein sequence of Ggra10118.t1

>Ggra10118.t1 ID=Ggra10118.t1|Name=Ggra10118.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MAPTFVLLLSILLQRALAQQCSAAISEVIFTDLTILNSAYTSDASFSGDA
SASLAGTVLTSTAVASYGGFFFSATDFQATGGFSLKFSIQSNDSSLGVGD
SFEAVIAASSSQSFFPPPFADGNTGSGQAGWSRQNAFVVEFDSYDSGADE
QDSSSGHVAIYLSGSEICKTDTSFVFGDGSQYTVWLDYNGFATQAYVRVS
TDGTRPTTAVLDCDVDIWNILNINTAHSVGFSAYNPSDQTGALHTLVDSI
SVADGYKPYDDDNCASYDRCSLRSTAALCIDNIAGTTCQVIQCEPSYVWD
VSGSNCCAFVEREAFVIGDGIDVSSLQIGDSVACQATRKIVAYLTDQSNC
S*

mRNA from alignment at tig00000113_pilon:228218..229273+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10118.t1 ID=Ggra10118.t1|Name=Ggra10118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000113_pilon:228218..229273+ (Gracilaria gracilis GNS1m male)
ATGGCCCCGACTTTTGTCCTACTCCTCTCCATTCTGCTGCAACGAGCATT
GGCCCAACAGTGCTCTGCGGCCATCTCCGAGGTCATCTTCACCGACCTCA
CCATCCTCAACTCCGCCTATACCTCTGATGCGTCATTCTCAGGTGATGCT
TCAGCATCTCTGGCTGGCACCGTGCTAACGTCCACCGCAGTGGCTTCTTA
TGGAGGTTTCTTCTTTAGTGCAACAGACTTCCAAGCCACCGGTGGATTTT
CTCTCAAGTTTAGCATCCAGTCGAACGATTCTTCACTGGGAGTAGGTGAT
TCCTTTGAAGCAGTCATTGCCGCAAGTTCTTCTCAGAGTTTCTTTCCGCC
GCCTTTCGCAGATGGAAACACTGGCTCTGGACAGGCTGGATGGTCCAGAC
AGAACGCATTTGTCGTAGAATTTGATTCTTACGATTCCGGTGCCGACGAG
CAGGATTCGTCTTCTGGGCACGTTGCAATATATCTTTCGGGCTCAGAGAT
ATGCAAGACTGACACATCCTTTGTCTTTGGGGATGGATCTCAATACACCG
TATGGCTCGATTACAACGGATTTGCAACCCAGGCTTACGTGCGCGTCTCT
ACTGATGGAACACGTCCCACAACAGCAGTCCTTGACTGTGATGTTGACAT
ATGGAATATACTTAACATTAACACTGCCCACTCTGTTGGGTTTTCTGCAT
ACAACCCATCCGACCAAACTGGAGCGCTTCATACTCTAGTCGATTCTATT
AGTGTTGCTGACGGATACAAACCGTACGACGATGACAACTGCGCAAGCTA
CGACCGATGCTCCCTAAGATCGACTGCGGCACTTTGTATTGATAATATTG
CTGGAACCACTTGTCAAGTCATTCAGTGTGAACCAAGTTATGTTTGGGAT
GTGTCCGGATCTAACTGTTGTGCATTTGTTGAACGGGAAGCATTTGTCAT
TGGGGATGGGATCGACGTCTCTTCTCTTCAAATAGGTGATTCTGTTGCTT
GTCAGGCGACGAGGAAGATTGTTGCGTATCTGACAGATCAGAGTAACTGT
TCTTAA

Coding sequence (CDS) from alignment at tig00000113_pilon:228218..229273+

>Ggra10118.t1 ID=Ggra10118.t1|Name=Ggra10118.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000113_pilon:228218..229273+ (Gracilaria gracilis GNS1m male)
ATGGCCCCGACTTTTGTCCTACTCCTCTCCATTCTGCTGCAACGAGCATT
GGCCCAACAGTGCTCTGCGGCCATCTCCGAGGTCATCTTCACCGACCTCA
CCATCCTCAACTCCGCCTATACCTCTGATGCGTCATTCTCAGGTGATGCT
TCAGCATCTCTGGCTGGCACCGTGCTAACGTCCACCGCAGTGGCTTCTTA
TGGAGGTTTCTTCTTTAGTGCAACAGACTTCCAAGCCACCGGTGGATTTT
CTCTCAAGTTTAGCATCCAGTCGAACGATTCTTCACTGGGAGTAGGTGAT
TCCTTTGAAGCAGTCATTGCCGCAAGTTCTTCTCAGAGTTTCTTTCCGCC
GCCTTTCGCAGATGGAAACACTGGCTCTGGACAGGCTGGATGGTCCAGAC
AGAACGCATTTGTCGTAGAATTTGATTCTTACGATTCCGGTGCCGACGAG
CAGGATTCGTCTTCTGGGCACGTTGCAATATATCTTTCGGGCTCAGAGAT
ATGCAAGACTGACACATCCTTTGTCTTTGGGGATGGATCTCAATACACCG
TATGGCTCGATTACAACGGATTTGCAACCCAGGCTTACGTGCGCGTCTCT
ACTGATGGAACACGTCCCACAACAGCAGTCCTTGACTGTGATGTTGACAT
ATGGAATATACTTAACATTAACACTGCCCACTCTGTTGGGTTTTCTGCAT
ACAACCCATCCGACCAAACTGGAGCGCTTCATACTCTAGTCGATTCTATT
AGTGTTGCTGACGGATACAAACCGTACGACGATGACAACTGCGCAAGCTA
CGACCGATGCTCCCTAAGATCGACTGCGGCACTTTGTATTGATAATATTG
CTGGAACCACTTGTCAAGTCATTCAGTGTGAACCAAGTTATGTTTGGGAT
GTGTCCGGATCTAACTGTTGTGCATTTGTTGAACGGGAAGCATTTGTCAT
TGGGGATGGGATCGACGTCTCTTCTCTTCAAATAGGTGATTCTGTTGCTT
GTCAGGCGACGAGGAAGATTGTTGCGTATCTGACAGATCAGAGTAACTGT
TCTTAA