Ggra10114.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10114.t1
Unique NameGgra10114.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:158471..161336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122172.KB890275_gene470
Preferred namegyrA
PFAMsDNA_gyraseA_C,DNA_topoisoIV
Max annot lvl32066|Fusobacteria
KEGG koko:K02469
Evalue4.27e-11
EggNOG OGsCOG0188@1|root,COG0188@2|Bacteria,3787P@32066|Fusobacteria
EC5.99.1.3
DescriptionA type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
COG categoryL
BRITEko00000,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10114Ggra10114Gracilaria gracilis GNS1m malegenetig00000113_pilon 158471..161336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10114.t1Ggra10114.t1Gracilaria gracilis GNS1m malepolypeptidetig00000113_pilon 158471..161336 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10114.t1.stop1Ggra10114.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000113_pilon 158471..158473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10114.t1.CDS1Ggra10114.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000113_pilon 158471..158937 -
Ggra10114.t1.CDS2Ggra10114.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000113_pilon 159023..159292 -
Ggra10114.t1.CDS3Ggra10114.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000113_pilon 160748..160904 -
Ggra10114.t1.CDS4Ggra10114.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000113_pilon 161149..161182 -
Ggra10114.t1.CDS5Ggra10114.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000113_pilon 161287..161336 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10114.t1.exon1Ggra10114.t1.exon1Gracilaria gracilis GNS1m maleexontig00000113_pilon 158471..158937 -
Ggra10114.t1.exon2Ggra10114.t1.exon2Gracilaria gracilis GNS1m maleexontig00000113_pilon 159023..159292 -
Ggra10114.t1.exon3Ggra10114.t1.exon3Gracilaria gracilis GNS1m maleexontig00000113_pilon 160748..160904 -
Ggra10114.t1.exon4Ggra10114.t1.exon4Gracilaria gracilis GNS1m maleexontig00000113_pilon 161149..161182 -
Ggra10114.t1.exon5Ggra10114.t1.exon5Gracilaria gracilis GNS1m maleexontig00000113_pilon 161287..161336 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10114.t1.intron1Ggra10114.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000113_pilon 158938..159022 -
Ggra10114.t1.intron2Ggra10114.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000113_pilon 159293..160747 -
Ggra10114.t1.intron3Ggra10114.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000113_pilon 160905..161148 -
Ggra10114.t1.intron4Ggra10114.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000113_pilon 161183..161286 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10114.t1.start1Ggra10114.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000113_pilon 161334..161336 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10114.t1 ID=Ggra10114.t1|Name=Ggra10114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=326bp
MTSPHQLPDKHIRAIHLKGIIVTSGHTTAGTQLVQRFQSGRPGNASDDRR
KREQRQSRNRQTLEKDSFDTGGVGTPTRKNNVESPDMGGEQVSVPALSSA
LSFIEVLDRLRGSQNFGAVRLKCPTLEARIMSLLRLHSEKGASGTTESSV
NDDDIVLGLVLQYLSRVIVPDEDDETIDETEDDESGVMDDDTTYLLAVTR
QGFGKRVRALDLMKKRRGGMSSIGTRLWEKRKERPNEDELVAVNFCRRDD
SVMLITSEGNMVRTMVAKVPVQERRTFGVRIQRLGRKDTVAGFIVFGISN
ADEAESIDAILDEEGIDDLEEESVN*
back to top

spliced messenger RNA

>Ggra10114.t1 ID=Ggra10114.t1|Name=Ggra10114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000113_pilon:158471..161336- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAGCCCTCATCAATTACCGGACAAGCACATTCGTGCAATTCACCT
CAAAGGTATAATAGTGACTTCGGGTCACACAACGGCGGGCACTCAGCTCG
TACAGAGGTTTCAATCTGGGCGCCCAGGCAACGCGTCTGACGACAGGAGA
AAGCGCGAACAACGACAAAGTAGAAATAGACAAACTCTCGAGAAAGATAG
CTTCGACACCGGAGGCGTTGGAACTCCAACAAGAAAGAATAATGTTGAAT
CCCCTGATATGGGAGGAGAGCAAGTTTCGGTTCCGGCGCTTTCAAGTGCT
TTGAGCTTTATAGAAGTTCTTGATCGACTTCGTGGCTCACAGAATTTCGG
TGCTGTGAGGTTGAAATGCCCAACTCTGGAAGCTCGCATCATGTCTCTGC
TCCGCTTACATTCCGAAAAAGGGGCGAGCGGGACGACAGAATCTTCCGTC
AATGACGATGACATTGTCCTTGGGCTTGTGCTTCAGTACTTGTCACGAGT
TATTGTCCCAGATGAAGACGACGAAACTATTGATGAAACTGAAGATGACG
AGTCCGGAGTTATGGACGATGACACAACGTACCTGCTTGCTGTAACACGG
CAAGGCTTTGGAAAGAGAGTTCGTGCATTAGATCTGATGAAGAAGCGTCG
TGGTGGTATGAGTAGCATAGGCACCAGGCTATGGGAGAAAAGGAAAGAAA
GGCCCAACGAAGATGAATTAGTTGCAGTGAATTTTTGTCGCCGTGATGAC
TCTGTCATGCTCATCACTAGCGAAGGAAACATGGTTCGGACTATGGTGGC
GAAAGTTCCTGTGCAAGAGAGACGAACCTTCGGCGTAAGAATTCAAAGAC
TGGGTCGGAAAGATACCGTTGCTGGATTCATCGTTTTCGGCATATCTAAT
GCAGATGAAGCTGAATCGATTGATGCTATTCTAGACGAGGAAGGCATCGA
TGATTTAGAAGAGGAAAGTGTGAACTAA
back to top

protein sequence of Ggra10114.t1

>Ggra10114.t1 ID=Ggra10114.t1|Name=Ggra10114.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=326bp
MTSPHQLPDKHIRAIHLKGIIVTSGHTTAGTQLVQRFQSGRPGNASDDRR
KREQRQSRNRQTLEKDSFDTGGVGTPTRKNNVESPDMGGEQVSVPALSSA
LSFIEVLDRLRGSQNFGAVRLKCPTLEARIMSLLRLHSEKGASGTTESSV
NDDDIVLGLVLQYLSRVIVPDEDDETIDETEDDESGVMDDDTTYLLAVTR
QGFGKRVRALDLMKKRRGGMSSIGTRLWEKRKERPNEDELVAVNFCRRDD
SVMLITSEGNMVRTMVAKVPVQERRTFGVRIQRLGRKDTVAGFIVFGISN
ADEAESIDAILDEEGIDDLEEESVN*
back to top

mRNA from alignment at tig00000113_pilon:158471..161336-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10114.t1 ID=Ggra10114.t1|Name=Ggra10114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2866bp|location=Sequence derived from alignment at tig00000113_pilon:158471..161336- (Gracilaria gracilis GNS1m male)
ATGACCAGCCCTCATCAATTACCGGACAAGCACATTCGTGCAATTCACCT
GTAACTTCAGCTCTGAACCGTGATGTGAACGAATATGTTTCGGGATGTCA
AAGCTTTGGCTGCGTCATCAAAAGCCCAAGAGACCATCTTCATCGACGCG
GTAGCAAAGGTATAATAGTGACTTCGGGTCACACAACGGTACGTCGTTTG
TAACTTCTTGCACAATGGTTTCACCATTTGCGGTGGACGAGTGGCCATGT
AGTTCAGGGATGAATCACCGCGAATGCCAACCAGACGTAATACGTCTTTC
TATGCGCAGTAAAACACAACAGATACGCAACATGAGGTCTCAGCAAATGG
TAGAGGTTTGCAGTTCGCGTTCGTCCGGTAAGGTAAGAATACCAACGTGA
ACCTAACTAATTTTATCGCCACCTCCAAAAAGGCGGGCACTCAGCTCGTA
CAGAGGTTTCAATCTGGGCGCCCAGGCAACGCGTCTGACGACAGGAGAAA
GCGCGAACAACGACAAAGTAGAAATAGACAAACTCTCGAGAAAGATAGCT
TCGACACCGGAGGCGTTGGAACTCCAACAAGAAAGAATAGTAAGCGGAAT
CATGGCCACGAAACATGAGTGATATAGCCGAGCAAAAACATCGGGTGGTG
AAAGCGGCAAGTCATGAGCCTGGACGACTCGGACAACGTTCGCCAGGTCA
TTCCGAGGGGGTTTGTCTGAGAGGGATGACGCGCTAGTCCGAAGATTTGC
AGAAAGCCGTACAAAAAGAGCATCAAGATGGTAGACAGCGACTGTCAAAA
CTGCTGCTAAGTGAGTTCCCACCACAATTCCACACAACGCGCAAGCAATG
GCTACAGCTTGTGTGCCAGGTTGCAACAACCGTACATCGTGAATGAGATC
AAACACACAGAGATCCCCGAGGTAATCCGCATACACGACAGTGGCGCGCA
AAAGGGCAGTGTGCGCAGGTTGCACACACGGCAAAACCCTCGTAATTGAT
GGGGAAGCAGTACGAGGTGATGATCGAACGACGGCGCGAGACGGTGGTGG
GATGGACGTGGTTAGACGAGGGCTGAGAGTTAGTGAAGGAGTCAGACCTT
TCGAGGGGGGCGGACTGAAGGTGGGATGCATTGAGTGAGCGAGCCACGGG
GGGGTTGTGGTCGGGGGAGCTCCTCGTTCTGTGGGGACAGTTTTGTCTCC
AAATCCGCAGCGCTCCTCGCGCTGAAAATCAATTTGTGGCGATTGAGTTT
CCGGCCGCCCTTTTCTCATTGGGTGGTTTCGATGAGCGCTGCGGCTGTGC
TTCTCTGTTCGAGACTCTCGAATCGAGAGTGCGATATTTGTTGCTGTTCC
GAGGCCCTCTTTTAAGTGTGCTCGGAACAGACGCTTTTCCTTTGTTTTGA
GAATCCGCACTAGCGAATTCGCGAGATGAGTGCACAATCCTGTCTTGGCT
ATCTCATCCGCAAGACCAGAGATCATCAACATCTTGATCTCTTTTCCAAG
TAATTAGACTTCTGCTTCTGAACCACTCCGAACCTGTCAGAGATGCCACA
ATGCTTGATCCCTGCGTTGGCGTCTTGTCTACCTGCTTTGCCTCTATTCG
TCACTTCTGGAGAGACACTTATTTCAGAAAACCTGTGTACTGAGGCAATA
AGAGTTATATGCCTGCTTCGAAATTGGGTTCATTACGGAGGTAAAAAGGT
TTCAGAGTTGCTGCGTTTTCCGTTTCTGCAGCGTATATTGAACTTCTTGT
CAAAGAGCGCAAGAAAATGGCTTCACGATAGTCGAGTCGTCTTCGAGTCC
TTGGCTGCCATGTGCGACGTGAGCAGGCATGCACCTTCCGCATTTCGGCA
GAAGGTTATTCGAAGTTCTATATCTCCTTTGCTAGCGAAGATTGCGGAGA
GCGGTGCACCACAATCTGCAAGGGCTGCTTTGTATGTGCTACTTGATGTA
TGTAGGGACGAATAGGGCTTCTCCGACTTGATGGCTCTGGAGCACGCAGT
AGCGAACTTGTGTGATAGAATTGCTCAAAACGACCATCAGGAAGATGTTG
AATCCCCTGATATGGGAGGAGAGCAAGTTTCGGTTCCGGCGCTTTCAAGT
GCTTTGAGCTTTATAGAAGTTCTTGATCGACTTCGTGGCTCACAGAATTT
CGGTGCTGTGAGGTTGAAATGCCCAACTCTGGAAGCTCGCATCATGTCTC
TGCTCCGCTTACATTCCGAAAAAGGGGCGAGCGGGACGACAGAATCTTCC
GTCAATGACGATGACATTGTCCTTGGGCTTGTGCTTCAGTACTTGTCACG
AGTTATTGTCCCAGGTAGTGTTCATCTTTTGTGCACTGCTGCGATCGATG
AAAACTTCAGTTTCAAACTGAAAGCATTGTTCTTGTGAGCAACTTGAAGA
TGAAGACGACGAAACTATTGATGAAACTGAAGATGACGAGTCCGGAGTTA
TGGACGATGACACAACGTACCTGCTTGCTGTAACACGGCAAGGCTTTGGA
AAGAGAGTTCGTGCATTAGATCTGATGAAGAAGCGTCGTGGTGGTATGAG
TAGCATAGGCACCAGGCTATGGGAGAAAAGGAAAGAAAGGCCCAACGAAG
ATGAATTAGTTGCAGTGAATTTTTGTCGCCGTGATGACTCTGTCATGCTC
ATCACTAGCGAAGGAAACATGGTTCGGACTATGGTGGCGAAAGTTCCTGT
GCAAGAGAGACGAACCTTCGGCGTAAGAATTCAAAGACTGGGTCGGAAAG
ATACCGTTGCTGGATTCATCGTTTTCGGCATATCTAATGCAGATGAAGCT
GAATCGATTGATGCTATTCTAGACGAGGAAGGCATCGATGATTTAGAAGA
GGAAAGTGTGAACTAA
back to top

Coding sequence (CDS) from alignment at tig00000113_pilon:158471..161336-

>Ggra10114.t1 ID=Ggra10114.t1|Name=Ggra10114.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000113_pilon:158471..161336- (Gracilaria gracilis GNS1m male)
ATGACCAGCCCTCATCAATTACCGGACAAGCACATTCGTGCAATTCACCT
CAAAGGTATAATAGTGACTTCGGGTCACACAACGGCGGGCACTCAGCTCG
TACAGAGGTTTCAATCTGGGCGCCCAGGCAACGCGTCTGACGACAGGAGA
AAGCGCGAACAACGACAAAGTAGAAATAGACAAACTCTCGAGAAAGATAG
CTTCGACACCGGAGGCGTTGGAACTCCAACAAGAAAGAATAATGTTGAAT
CCCCTGATATGGGAGGAGAGCAAGTTTCGGTTCCGGCGCTTTCAAGTGCT
TTGAGCTTTATAGAAGTTCTTGATCGACTTCGTGGCTCACAGAATTTCGG
TGCTGTGAGGTTGAAATGCCCAACTCTGGAAGCTCGCATCATGTCTCTGC
TCCGCTTACATTCCGAAAAAGGGGCGAGCGGGACGACAGAATCTTCCGTC
AATGACGATGACATTGTCCTTGGGCTTGTGCTTCAGTACTTGTCACGAGT
TATTGTCCCAGATGAAGACGACGAAACTATTGATGAAACTGAAGATGACG
AGTCCGGAGTTATGGACGATGACACAACGTACCTGCTTGCTGTAACACGG
CAAGGCTTTGGAAAGAGAGTTCGTGCATTAGATCTGATGAAGAAGCGTCG
TGGTGGTATGAGTAGCATAGGCACCAGGCTATGGGAGAAAAGGAAAGAAA
GGCCCAACGAAGATGAATTAGTTGCAGTGAATTTTTGTCGCCGTGATGAC
TCTGTCATGCTCATCACTAGCGAAGGAAACATGGTTCGGACTATGGTGGC
GAAAGTTCCTGTGCAAGAGAGACGAACCTTCGGCGTAAGAATTCAAAGAC
TGGGTCGGAAAGATACCGTTGCTGGATTCATCGTTTTCGGCATATCTAAT
GCAGATGAAGCTGAATCGATTGATGCTATTCTAGACGAGGAAGGCATCGA
TGATTTAGAAGAGGAAAGTGTGAACTAA
back to top