Ggra10113.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10113.t1
Unique NameGgra10113.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:157557..158084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10113Ggra10113Gracilaria gracilis GNS1m malegenetig00000113_pilon 157557..158084 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10113.t1.start1Ggra10113.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000113_pilon 157557..157559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10113.t1.CDS1Ggra10113.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000113_pilon 157557..158084 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10113.t1.exon1Ggra10113.t1.exon1Gracilaria gracilis GNS1m maleexontig00000113_pilon 157557..158084 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10113.t1.stop1Ggra10113.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000113_pilon 158082..158084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10113.t1Ggra10113.t1Gracilaria gracilis GNS1m malepolypeptidetig00000113_pilon 157557..158084 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10113.t1 ID=Ggra10113.t1|Name=Ggra10113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=176bp
MDGFALVQNADADCDMLASDETTFDHDENVSHGSRFESNEGNIAHGETGD
EIVFSQDDNDYDDEESRWASRQNSNHSDEDSTYSSDEKDELQKLTDDDWN
EYRLDLVSTHQEQEMKNLDDSLSTGHELTNGPNDRWEDTERAEYGKNGLY
EIKKELHINSHSHDTLHDSVKSMAV*
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spliced messenger RNA

>Ggra10113.t1 ID=Ggra10113.t1|Name=Ggra10113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000113_pilon:157557..158084+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGATTTGCACTGGTTCAGAATGCTGATGCTGACTGTGACATGCT
AGCTTCAGATGAAACAACATTTGACCATGACGAAAACGTTTCACATGGTT
CCAGATTCGAATCGAATGAAGGCAACATAGCTCACGGGGAAACTGGCGAT
GAGATAGTATTTTCCCAGGATGATAATGATTATGACGACGAAGAAAGTCG
ATGGGCCTCAAGGCAAAATTCCAACCACTCTGATGAGGATAGTACGTATA
GCTCAGATGAAAAGGATGAGCTTCAAAAGCTCACTGATGACGATTGGAAT
GAATACCGGTTAGACCTCGTTTCCACTCATCAAGAACAGGAGATGAAGAA
TTTAGATGACAGCCTCTCTACAGGGCATGAGCTCACCAATGGCCCGAACG
ATCGTTGGGAAGACACAGAGAGAGCTGAATATGGCAAAAATGGACTATAC
GAGATTAAAAAAGAGCTGCACATCAACTCACATTCCCACGATACGCTTCA
CGATTCAGTGAAATCTATGGCAGTCTGA
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protein sequence of Ggra10113.t1

>Ggra10113.t1 ID=Ggra10113.t1|Name=Ggra10113.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MDGFALVQNADADCDMLASDETTFDHDENVSHGSRFESNEGNIAHGETGD
EIVFSQDDNDYDDEESRWASRQNSNHSDEDSTYSSDEKDELQKLTDDDWN
EYRLDLVSTHQEQEMKNLDDSLSTGHELTNGPNDRWEDTERAEYGKNGLY
EIKKELHINSHSHDTLHDSVKSMAV*
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mRNA from alignment at tig00000113_pilon:157557..158084+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10113.t1 ID=Ggra10113.t1|Name=Ggra10113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000113_pilon:157557..158084+ (Gracilaria gracilis GNS1m male)
ATGGATGGATTTGCACTGGTTCAGAATGCTGATGCTGACTGTGACATGCT
AGCTTCAGATGAAACAACATTTGACCATGACGAAAACGTTTCACATGGTT
CCAGATTCGAATCGAATGAAGGCAACATAGCTCACGGGGAAACTGGCGAT
GAGATAGTATTTTCCCAGGATGATAATGATTATGACGACGAAGAAAGTCG
ATGGGCCTCAAGGCAAAATTCCAACCACTCTGATGAGGATAGTACGTATA
GCTCAGATGAAAAGGATGAGCTTCAAAAGCTCACTGATGACGATTGGAAT
GAATACCGGTTAGACCTCGTTTCCACTCATCAAGAACAGGAGATGAAGAA
TTTAGATGACAGCCTCTCTACAGGGCATGAGCTCACCAATGGCCCGAACG
ATCGTTGGGAAGACACAGAGAGAGCTGAATATGGCAAAAATGGACTATAC
GAGATTAAAAAAGAGCTGCACATCAACTCACATTCCCACGATACGCTTCA
CGATTCAGTGAAATCTATGGCAGTCTGA
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Coding sequence (CDS) from alignment at tig00000113_pilon:157557..158084+

>Ggra10113.t1 ID=Ggra10113.t1|Name=Ggra10113.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00000113_pilon:157557..158084+ (Gracilaria gracilis GNS1m male)
ATGGATGGATTTGCACTGGTTCAGAATGCTGATGCTGACTGTGACATGCT
AGCTTCAGATGAAACAACATTTGACCATGACGAAAACGTTTCACATGGTT
CCAGATTCGAATCGAATGAAGGCAACATAGCTCACGGGGAAACTGGCGAT
GAGATAGTATTTTCCCAGGATGATAATGATTATGACGACGAAGAAAGTCG
ATGGGCCTCAAGGCAAAATTCCAACCACTCTGATGAGGATAGTACGTATA
GCTCAGATGAAAAGGATGAGCTTCAAAAGCTCACTGATGACGATTGGAAT
GAATACCGGTTAGACCTCGTTTCCACTCATCAAGAACAGGAGATGAAGAA
TTTAGATGACAGCCTCTCTACAGGGCATGAGCTCACCAATGGCCCGAACG
ATCGTTGGGAAGACACAGAGAGAGCTGAATATGGCAAAAATGGACTATAC
GAGATTAAAAAAGAGCTGCACATCAACTCACATTCCCACGATACGCTTCA
CGATTCAGTGAAATCTATGGCAGTCTGA
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