Ggra10111.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10111.t1
Unique NameGgra10111.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:152289..154306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10111Ggra10111Gracilaria gracilis GNS1m malegenetig00000113_pilon 152289..154306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10111.t1Ggra10111.t1Gracilaria gracilis GNS1m malepolypeptidetig00000113_pilon 152289..154306 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10111.t1.start1Ggra10111.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000113_pilon 152289..152291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10111.t1.CDS1Ggra10111.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000113_pilon 152289..152469 +
Ggra10111.t1.CDS2Ggra10111.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000113_pilon 153910..153970 +
Ggra10111.t1.CDS3Ggra10111.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000113_pilon 154078..154306 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10111.t1.exon1Ggra10111.t1.exon1Gracilaria gracilis GNS1m maleexontig00000113_pilon 152289..152469 +
Ggra10111.t1.exon2Ggra10111.t1.exon2Gracilaria gracilis GNS1m maleexontig00000113_pilon 153910..153970 +
Ggra10111.t1.exon3Ggra10111.t1.exon3Gracilaria gracilis GNS1m maleexontig00000113_pilon 154078..154306 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10111.t1.intron1Ggra10111.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000113_pilon 152470..153909 +
Ggra10111.t1.intron2Ggra10111.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000113_pilon 153971..154077 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10111.t1.stop1Ggra10111.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000113_pilon 154304..154306 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10111.t1 ID=Ggra10111.t1|Name=Ggra10111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=157bp
MDARRISNCESWHSRGEARRITAPERPLTVTEPISGPLIVRVPDAPALTT
CIHMTSPFFPVHVSSKLGISRNQKQLQTTTRFFAMCEWDLDKDSRGGLVR
IKVKDCGSSSCPSSDNYRRSRGQNDTILPAQKAESIAVSRSLPPCNVPSS
LSLHQM*
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spliced messenger RNA

>Ggra10111.t1 ID=Ggra10111.t1|Name=Ggra10111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00000113_pilon:152289..154306+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCAAGACGCATTTCAAATTGCGAGTCATGGCATTCTAGAGGTGA
AGCACGGCGCATTACGGCACCTGAACGACCTCTGACTGTTACTGAGCCGA
TAAGTGGACCGCTTATAGTGCGCGTGCCTGATGCTCCGGCGCTCACTACC
TGCATCCACATGACATCTCCCTTCTTCCCAGTGCATGTCAGTTCTAAGCT
TGGAATTTCAAGAAATCAGAAGCAGCTGCAAACAACGACGAGGTTTTTCG
CAATGTGTGAGTGGGATCTCGACAAGGATAGTAGAGGTGGATTAGTCCGT
ATCAAAGTTAAAGATTGTGGGAGCAGTTCATGCCCTAGTTCTGATAACTA
CCGTCGAAGCCGGGGCCAGAATGACACCATTCTGCCCGCACAAAAGGCAG
AATCGATCGCAGTTAGTCGTTCTTTGCCTCCGTGCAATGTTCCAAGCAGT
CTGAGCCTTCATCAGATGTAG
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protein sequence of Ggra10111.t1

>Ggra10111.t1 ID=Ggra10111.t1|Name=Ggra10111.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=157bp
MDARRISNCESWHSRGEARRITAPERPLTVTEPISGPLIVRVPDAPALTT
CIHMTSPFFPVHVSSKLGISRNQKQLQTTTRFFAMCEWDLDKDSRGGLVR
IKVKDCGSSSCPSSDNYRRSRGQNDTILPAQKAESIAVSRSLPPCNVPSS
LSLHQM*
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mRNA from alignment at tig00000113_pilon:152289..154306+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10111.t1 ID=Ggra10111.t1|Name=Ggra10111.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2018bp|location=Sequence derived from alignment at tig00000113_pilon:152289..154306+ (Gracilaria gracilis GNS1m male)
ATGGACGCAAGACGCATTTCAAATTGCGAGTCATGGCATTCTAGAGGTGA
AGCACGGCGCATTACGGCACCTGAACGACCTCTGACTGTTACTGAGCCGA
TAAGTGGACCGCTTATAGTGCGCGTGCCTGATGCTCCGGCGCTCACTACC
TGCATCCACATGACATCTCCCTTCTTCCCAGGTAACTCGAATACAACTTG
AAGCGGCGTTGCGTTTAAGAGAACCACAACTTCAGACCAGCGTAGTGATT
CCTCCTCAAGATCTTCTTCTGTCAGACCACCTTCTGTATGTATTTCCTTG
AGTTGCTTTAGCCGCAATCTTCGTAGAAAACTAGCTTTTCGTGAATATCT
TCCGCAGTTTCCATGCAGAAGATTTCAGGATGTGACCTGCGCAAGAGGAC
GAGTCCTCTAATACTGAACAGTGGACCATTCTTTCAGTTTTGTACTCCAA
CGAATCATGTTGATCTCATCTGAAGATTCGTATGAATTCTCATCGTCAAA
CTTTGTTCTGCACATTTCCTGTCCCGTCTGGATGAAAGGAATACCTTGGG
AAGTGAGGACTACAACCGCTGCTAACTTGTGCATTCGTCGTACGTCTTCT
TCGCTGAATTTGATTGTATCTGTCCTGGATCGAATGTAGTGATTTAAGTG
GTCCCATAGAGTACGATTGTCATGGCACTCGACGTAGTTGATGCTTTCCA
GTGGCGAATCGGCGAACATATCCACAGAGCCTATAATCCCACCTGACTGA
CTTCCGTAAGCCTACCACCGTCCATGATGAATGTCTCTTCGGTATCAAAG
GGAGAACCTCTAATCGCGTTGCGAAAGGTGTCGTTAAAGACTGCAAAACC
TTTGGAACGCTGTGAACCCTTGTCAGTTGCCTTTATTGGAGAGAGGCCAC
CGATCCAtgttagccgcgtctgacgcgtgcactgggggtgagcgaattgc
caaactccgcaatgcagtttggcaacatgtgagtcgaaagaaagccgtgc
gtcacgaagactcgacATTCTGCTTCCATTATCGAGCGTCGGTGTGGCGT
AAACATCACATTGACAAAGAAAGATTCGTGAGCGGCGAGCTCAGCACACA
CGTTGCGCTAGAGCACGCGTAGCGGGTAACTTTATATAGATCCTACATAC
ATACTGCGCTCTCTGAAACGCAACGATTCGCACTGTCACGCTCTACTTCT
TTTGGACGACGAGAAACTCTTTCTCTATGTTGTGACGCACGATGCTCTTC
TTGCTGCTATGAAGTTCCTTTCGGTTATACGAGTGATCTTCCAGATCACG
CTTGCCGGGCGATCCGCCTTCAACACAATTATATCAAGCGTGCCTGCAGT
GCTGCTTGTAGTGTTACCTGTATCTACACTACATAACCGAAATGCACCGC
TTCCAGTTTCGCCCAGGCCCTCCATGGACCAGATATGAGATATATTTACG
ACAACTCGTAGCCTTTCACTACCCGTAACCGAGCGAGATTAAGTTCAAAT
TTGTTTTGTCGACTTAAAACCAAACAGCGTCGAGGGTCTCATCTTCTCTT
GACGCGAAATACTTACAACCTAGTTGTGTATAACCGTCTGAAACATCTGT
GAGTCCACTACACGGACTTAGTGCATGTCAGTTCTAAGCTTGGAATTTCA
AGAAATCAGAAGCAGCTGCAAACAACGACGAGGTATGTTTTCAAACCTTT
TGAGCGCTCCCGAACCACTATTGCTACCTCTCTTTATCGTAGTACGTACC
TTCGTTACTGACGATTTAATCAAAATTACTTGAGAACAGGTTTTTCGCAA
TGTGTGAGTGGGATCTCGACAAGGATAGTAGAGGTGGATTAGTCCGTATC
AAAGTTAAAGATTGTGGGAGCAGTTCATGCCCTAGTTCTGATAACTACCG
TCGAAGCCGGGGCCAGAATGACACCATTCTGCCCGCACAAAAGGCAGAAT
CGATCGCAGTTAGTCGTTCTTTGCCTCCGTGCAATGTTCCAAGCAGTCTG
AGCCTTCATCAGATGTAG
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Coding sequence (CDS) from alignment at tig00000113_pilon:152289..154306+

>Ggra10111.t1 ID=Ggra10111.t1|Name=Ggra10111.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00000113_pilon:152289..154306+ (Gracilaria gracilis GNS1m male)
ATGGACGCAAGACGCATTTCAAATTGCGAGTCATGGCATTCTAGAGGTGA
AGCACGGCGCATTACGGCACCTGAACGACCTCTGACTGTTACTGAGCCGA
TAAGTGGACCGCTTATAGTGCGCGTGCCTGATGCTCCGGCGCTCACTACC
TGCATCCACATGACATCTCCCTTCTTCCCAGTGCATGTCAGTTCTAAGCT
TGGAATTTCAAGAAATCAGAAGCAGCTGCAAACAACGACGAGGTTTTTCG
CAATGTGTGAGTGGGATCTCGACAAGGATAGTAGAGGTGGATTAGTCCGT
ATCAAAGTTAAAGATTGTGGGAGCAGTTCATGCCCTAGTTCTGATAACTA
CCGTCGAAGCCGGGGCCAGAATGACACCATTCTGCCCGCACAAAAGGCAG
AATCGATCGCAGTTAGTCGTTCTTTGCCTCCGTGCAATGTTCCAAGCAGT
CTGAGCCTTCATCAGATGTAG
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