Ggra1011.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1011.t1
Unique NameGgra1011.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:452425..452922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1011Ggra1011Gracilaria gracilis GNS1m malegenetig00000027_pilon 452425..452922 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1011.t1.start1Ggra1011.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 452425..452427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1011.t1.CDS1Ggra1011.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 452425..452922 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1011.t1.exon1Ggra1011.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 452425..452922 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1011.t1.stop1Ggra1011.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 452920..452922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1011.t1Ggra1011.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 452425..452922 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1011.t1 ID=Ggra1011.t1|Name=Ggra1011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=166bp
MKLKVLNAVVVFSALATFSIAASLDLEDEAERFPERCDVPSDVAYCMDVM
RVGTMFNDHTAEQFVRLETQLSEHALEECSWESFEGKRSPEECISTLSRF
AEDNTALVDTPNDLDVSEHALDKICYKVCKAAKCFKCKFKLRKKKRKKCK
KKCKKKCRKKCDKYF*
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spliced messenger RNA

>Ggra1011.t1 ID=Ggra1011.t1|Name=Ggra1011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00000027_pilon:452425..452922+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTAAAGTTCTGAACGCCGTCGTGGTGTTCAGCGCCCTGGCCAC
CTTCTCCATTGCCGCAAGCCTTGACTTGGAAGACGAGGCCGAGCGGTTCC
CGGAAAGATGTGATGTTCCTTCTGATGTGGCGTACTGCATGGATGTGATG
CGTGTTGGTACGATGTTCAATGATCACACCGCTGAACAATTTGTTCGATT
GGAGACGCAACTATCGGAGCATGCCTTAGAAGAGTGCTCCTGGGAGTCGT
TCGAGGGAAAGAGGTCTCCAGAAGAATGTATTTCCACCCTCTCAAGGTTC
GCTGAGGACAATACAGCTCTGGTGGATACACCCAATGATCTCGATGTCTC
TGAGCACGCCCTGGACAAAATCTGCTACAAGGTGTGCAAGGCTGCGAAAT
GCTTCAAGTGCAAGTTCAAGCTCCGCaagaagaagaggaagaagtgtaag
aagaagtgcaagaagaagTGCCGTAAGAAGTGCGACAAGTACTTCTAG
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protein sequence of Ggra1011.t1

>Ggra1011.t1 ID=Ggra1011.t1|Name=Ggra1011.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=166bp
MKLKVLNAVVVFSALATFSIAASLDLEDEAERFPERCDVPSDVAYCMDVM
RVGTMFNDHTAEQFVRLETQLSEHALEECSWESFEGKRSPEECISTLSRF
AEDNTALVDTPNDLDVSEHALDKICYKVCKAAKCFKCKFKLRKKKRKKCK
KKCKKKCRKKCDKYF*
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mRNA from alignment at tig00000027_pilon:452425..452922+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1011.t1 ID=Ggra1011.t1|Name=Ggra1011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00000027_pilon:452425..452922+ (Gracilaria gracilis GNS1m male)
ATGAAGCTTAAAGTTCTGAACGCCGTCGTGGTGTTCAGCGCCCTGGCCAC
CTTCTCCATTGCCGCAAGCCTTGACTTGGAAGACGAGGCCGAGCGGTTCC
CGGAAAGATGTGATGTTCCTTCTGATGTGGCGTACTGCATGGATGTGATG
CGTGTTGGTACGATGTTCAATGATCACACCGCTGAACAATTTGTTCGATT
GGAGACGCAACTATCGGAGCATGCCTTAGAAGAGTGCTCCTGGGAGTCGT
TCGAGGGAAAGAGGTCTCCAGAAGAATGTATTTCCACCCTCTCAAGGTTC
GCTGAGGACAATACAGCTCTGGTGGATACACCCAATGATCTCGATGTCTC
TGAGCACGCCCTGGACAAAATCTGCTACAAGGTGTGCAAGGCTGCGAAAT
GCTTCAAGTGCAAGTTCAAGCTCCGCaagaagaagaggaagaagtgtaag
aagaagtgcaagaagaagTGCCGTAAGAAGTGCGACAAGTACTTCTAG
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Coding sequence (CDS) from alignment at tig00000027_pilon:452425..452922+

>Ggra1011.t1 ID=Ggra1011.t1|Name=Ggra1011.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=498bp|location=Sequence derived from alignment at tig00000027_pilon:452425..452922+ (Gracilaria gracilis GNS1m male)
ATGAAGCTTAAAGTTCTGAACGCCGTCGTGGTGTTCAGCGCCCTGGCCAC
CTTCTCCATTGCCGCAAGCCTTGACTTGGAAGACGAGGCCGAGCGGTTCC
CGGAAAGATGTGATGTTCCTTCTGATGTGGCGTACTGCATGGATGTGATG
CGTGTTGGTACGATGTTCAATGATCACACCGCTGAACAATTTGTTCGATT
GGAGACGCAACTATCGGAGCATGCCTTAGAAGAGTGCTCCTGGGAGTCGT
TCGAGGGAAAGAGGTCTCCAGAAGAATGTATTTCCACCCTCTCAAGGTTC
GCTGAGGACAATACAGCTCTGGTGGATACACCCAATGATCTCGATGTCTC
TGAGCACGCCCTGGACAAAATCTGCTACAAGGTGTGCAAGGCTGCGAAAT
GCTTCAAGTGCAAGTTCAAGCTCCGCaagaagaagaggaagaagtgtaag
aagaagtgcaagaagaagTGCCGTAAGAAGTGCGACAAGTACTTCTAG
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