Ggra1010.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1010.t1
Unique NameGgra1010.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:442561..443316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr48253
PFAMsBACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K20285,ko:K21912
Evalue3.17e-22
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1010Ggra1010Gracilaria gracilis GNS1m malegenetig00000027_pilon 442561..443316 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1010.t1.stop1Ggra1010.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 442561..442563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1010.t1.CDS1Ggra1010.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 442561..443316 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1010.t1.exon1Ggra1010.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 442561..443316 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1010.t1.start1Ggra1010.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 443314..443316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1010.t1Ggra1010.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 442561..443316 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1010.t1 ID=Ggra1010.t1|Name=Ggra1010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MQWCLSRSLLAVVLLLLVCSPVRAVSGKNPCHGGKGASGRGVKCTGVFLP
PALCSQCKLKPFLSNGNFADCRSIYDLSDGACQQQLRLYAEANKECDPVR
LQQTKDFSSSWNVMQLDYFVYSMCEQCCDCVPRGASPDQYEDRSDTGTLL
SVYRGNCPAHAHYDICRVLPNIKYTRSLDGASDTHEDWPRVCPLLKSWIA
SDAAKGWLWQSFVSMDGAIARFLSQLMDDARCGAEESWMECTSLEGAQGR
L*
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spliced messenger RNA

>Ggra1010.t1 ID=Ggra1010.t1|Name=Ggra1010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000027_pilon:442561..443316- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTGGTGTTTGTCGCGCTCGCTGCTCGCCGTGGTGCTGCTGCTGCT
TGTTTGTTCGCCGGTGCGCGCCGTGTCCGGCAAAAATCCCTGCCACGGCG
GCAAGGGCGCCTCGGGGCGCGGCGTCAAGTGCACGGGCGTGTTCCTGCCG
CCCGCGCTGTGTTCGCAGTGCAAGCTCAAGCCGTTTCTGAGCAACGGCAA
CTTTGCGGACTGTCGCTCCATCTACGACCTGTCGGACGGCGCGTGTCAGC
AGCAACTACGGCTGTACGCCGAGGCGAACAAGGAGTGCGACCCCGTGCGT
CTGCAGCAGACAAAGGACTTTTCCAGCTCGTGGAACGTGATGCAGCTGGA
CTACTTTGTGTACTCCATGTGCGAGCAGTGCTGCGACTGCGTGCCGCGCG
GTGCGTCTCCCGACCAATACGAGGACCGTAGCGACACCGGCACGCTGCTC
AGCGTGTACCGCGGCAACTGCCCCGCGCACGCGCACTACGACATTTGTCG
CGTGCTGCCCAACATCAAGTACACGCGCTCGCTGGACGGAGCGTCCGACA
CGCACGAAGACTGGCCTCGCGTGTGCCCGCTGCTCAAGAGCTGGATCGCG
TCCGACGCCGCAAAGGGCTGGCTGTGGCAGTCGTTTGTCAGCATGGACGG
CGCCATTGCGCGCTTTCTCTCGCAGTTGATGGACGATGCGCGCTGCGGCG
CCGAAGAGTCGTGGATGGAGTGCACTTCGCTCGAGGGCGCGCAGGGCAGG
CTGTGA
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protein sequence of Ggra1010.t1

>Ggra1010.t1 ID=Ggra1010.t1|Name=Ggra1010.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MQWCLSRSLLAVVLLLLVCSPVRAVSGKNPCHGGKGASGRGVKCTGVFLP
PALCSQCKLKPFLSNGNFADCRSIYDLSDGACQQQLRLYAEANKECDPVR
LQQTKDFSSSWNVMQLDYFVYSMCEQCCDCVPRGASPDQYEDRSDTGTLL
SVYRGNCPAHAHYDICRVLPNIKYTRSLDGASDTHEDWPRVCPLLKSWIA
SDAAKGWLWQSFVSMDGAIARFLSQLMDDARCGAEESWMECTSLEGAQGR
L*
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mRNA from alignment at tig00000027_pilon:442561..443316-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1010.t1 ID=Ggra1010.t1|Name=Ggra1010.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000027_pilon:442561..443316- (Gracilaria gracilis GNS1m male)
ATGCAGTGGTGTTTGTCGCGCTCGCTGCTCGCCGTGGTGCTGCTGCTGCT
TGTTTGTTCGCCGGTGCGCGCCGTGTCCGGCAAAAATCCCTGCCACGGCG
GCAAGGGCGCCTCGGGGCGCGGCGTCAAGTGCACGGGCGTGTTCCTGCCG
CCCGCGCTGTGTTCGCAGTGCAAGCTCAAGCCGTTTCTGAGCAACGGCAA
CTTTGCGGACTGTCGCTCCATCTACGACCTGTCGGACGGCGCGTGTCAGC
AGCAACTACGGCTGTACGCCGAGGCGAACAAGGAGTGCGACCCCGTGCGT
CTGCAGCAGACAAAGGACTTTTCCAGCTCGTGGAACGTGATGCAGCTGGA
CTACTTTGTGTACTCCATGTGCGAGCAGTGCTGCGACTGCGTGCCGCGCG
GTGCGTCTCCCGACCAATACGAGGACCGTAGCGACACCGGCACGCTGCTC
AGCGTGTACCGCGGCAACTGCCCCGCGCACGCGCACTACGACATTTGTCG
CGTGCTGCCCAACATCAAGTACACGCGCTCGCTGGACGGAGCGTCCGACA
CGCACGAAGACTGGCCTCGCGTGTGCCCGCTGCTCAAGAGCTGGATCGCG
TCCGACGCCGCAAAGGGCTGGCTGTGGCAGTCGTTTGTCAGCATGGACGG
CGCCATTGCGCGCTTTCTCTCGCAGTTGATGGACGATGCGCGCTGCGGCG
CCGAAGAGTCGTGGATGGAGTGCACTTCGCTCGAGGGCGCGCAGGGCAGG
CTGTGA
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Coding sequence (CDS) from alignment at tig00000027_pilon:442561..443316-

>Ggra1010.t1 ID=Ggra1010.t1|Name=Ggra1010.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000027_pilon:442561..443316- (Gracilaria gracilis GNS1m male)
ATGCAGTGGTGTTTGTCGCGCTCGCTGCTCGCCGTGGTGCTGCTGCTGCT
TGTTTGTTCGCCGGTGCGCGCCGTGTCCGGCAAAAATCCCTGCCACGGCG
GCAAGGGCGCCTCGGGGCGCGGCGTCAAGTGCACGGGCGTGTTCCTGCCG
CCCGCGCTGTGTTCGCAGTGCAAGCTCAAGCCGTTTCTGAGCAACGGCAA
CTTTGCGGACTGTCGCTCCATCTACGACCTGTCGGACGGCGCGTGTCAGC
AGCAACTACGGCTGTACGCCGAGGCGAACAAGGAGTGCGACCCCGTGCGT
CTGCAGCAGACAAAGGACTTTTCCAGCTCGTGGAACGTGATGCAGCTGGA
CTACTTTGTGTACTCCATGTGCGAGCAGTGCTGCGACTGCGTGCCGCGCG
GTGCGTCTCCCGACCAATACGAGGACCGTAGCGACACCGGCACGCTGCTC
AGCGTGTACCGCGGCAACTGCCCCGCGCACGCGCACTACGACATTTGTCG
CGTGCTGCCCAACATCAAGTACACGCGCTCGCTGGACGGAGCGTCCGACA
CGCACGAAGACTGGCCTCGCGTGTGCCCGCTGCTCAAGAGCTGGATCGCG
TCCGACGCCGCAAAGGGCTGGCTGTGGCAGTCGTTTGTCAGCATGGACGG
CGCCATTGCGCGCTTTCTCTCGCAGTTGATGGACGATGCGCGCTGCGGCG
CCGAAGAGTCGTGGATGGAGTGCACTTCGCTCGAGGGCGCGCAGGGCAGG
CTGTGA
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