Ggra1009.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1009.t1
Unique Name	Ggra1009.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	637

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:386088..387998 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1009	Ggra1009	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 386088..387998 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1009.t1.start1	Ggra1009.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 386088..386090 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1009.t1.CDS1	Ggra1009.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 386088..387998 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1009.t1.exon1	Ggra1009.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 386088..387998 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1009.t1.stop1	Ggra1009.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 387996..387998 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1009.t1	Ggra1009.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 386088..387998 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:386088..387998+
coding sequence from alignment at tig00000027_pilon:386088..387998+

mRNA sequence

>Ggra1009.t1 ID=Ggra1009.t1|Name=Ggra1009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=637bp
MCTSLAALRFRPGDLVLCRYLNYPVWPARIALSHQRSACNSFVSQRRTRR
GDAAVLAYWVVFTAESVGGWVRADCVLPYHPAYTAAMRAPPRAAPVFRER
RRALALARREFARGRSRFSFCETDLHLLRQLCAMPIDDFVDVRGGDSDAE
CERRVSDHTAAADEQGGRRDSGDKRASLCARLRARALPRRSAAMQLRSRQ
PKRELRPHSARVLRTKSAKLADMEEEEEEQHAATFVQQSLHAPLKPPPKQ
PVSNAAHHQTVAHAECFEERQREVHTNIQCLGAEERQMHENNQCLGAGER
QMHENNQCLGAGERQMHENNQCLGAEERQMHADNQCLGAEGRQIQTNEYL
ASEERQIRTNECLGSEERHMQTNECPGSEERQIRTDDCNGADEAEIHPEE
LEPQQHISMQPEPPPKPPRRKKRGRPPKKALRVSQHHPVQVHSRIVKKEP
VETPVAAHKRDPMVALTHVPLHMSAERQFKRKKRATPRKIVAPQQTVPPE
TTDPMTQMIERMQRRITRQEKQIVLLSQQLKAREAAQDSAMGHGYLPSIA
MLSRTLDPEAVKAQGEKVNQKAVCFQTTLAQYVVLMENASKARKDVERAW
KHLAEEGRCAEEHAMQVELFLSKLTPLTEFVRSVRM*

spliced messenger RNA

>Ggra1009.t1 ID=Ggra1009.t1|Name=Ggra1009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1911bp|location=Sequence derived from alignment at tig00000027_pilon:386088..387998+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACGTCGCTCGCCGCGCTACGCTTCCGCCCAGGCGACCTGGTGCT
ATGCCGCTACCTCAACTACCCCGTGTGGCCGGCGCGCATCGCGCTGAGCC
ACCAGCGCAGCGCGTGCAACAGCTTCGTCAGCCAGCGGCGCACGCGCCGC
GGCGACGCCGCCGTGCTGGCGTACTGGGTGGTGTTCACGGCCGAGAGCGT
GGGCGGTTGGGTACGCGCCGACTGCGTGCTGCCATATCACCCCGCGTACA
CCGCCGCCATgcgcgcgccgccgcgcgccgcgcccgtgttccgcgagcgt
cgccgcgcgctggcgctcgcgcgccgcgagtttgcgcgcggacgctcgcg
cTTTTCGTTTTGTGAGACGGACTTGCACCTGCTGCGGCAGCTGTGCGCCA
TGCCCATCGACGACTTTGTCGATGTCAGGGGCGGAGACTCGGACGCTGAG
TGTGAGCGTCGCGTCAGCGACCATACGGCCGCCGCGGACGAGCAAGGGGG
GCGGCGTGATTCGGGCGACAAGCGCGCTTCTTTGTGCGCTCGTTTGCGCG
CTCGTGCGCTCCCGCGCCGTTCGGCCGCTATGCAGTTGAGGTCGCGCCAG
CCTAAGCGTGAGTTGCGCCCGCACTCTGCTCGTGTGCTGCGCACCAAATC
CGCCAAGCTTGCAGACATggaggaggaggaggaagagCAACACGCTGCAA
CTTTTGTACAGCAGTCGTTGCATGCTCCTTTGAAACCACCTCCCAAACAG
CCGGTTTCCAACGCTGCCCATCACCAAACTGTGGCACATGCAGAGTGTTT
TGAAGAACGACAACGCGAAGTACACACAAACATCCAGTGTCTTGGCGCAG
AGGAACGCCAAATGCACGAAAACAACCAGTGTCTTGGCGCAGGGGAACGC
CAAATGCACGAAAACAACCAGTGTCTTGGCGCAGGGGAACGCCAAATGCA
CGAAAACAACCAGTGTCTTGGCGCAGAGGAACGCCAAATGCACGCAGACA
ACCAGTGTCTTGGCGCAGAGGGACGCCAAATACAAACAAACGAGTATCTT
GCTTCGGAGGAACGTCAAATACGAACAAACGAGTGTCTTGGTTCGGAGGA
ACGCCATATGCAAACAAACGAGTGTCCTGGTTCGGAGGAACGCCAAATAC
GTACAGACGACTGTAATGGCGCGGATGAAGCAGAAATACACCCAGAGGAG
CTCGAACCGCAGCAGCACATATCCATGCAACCCGAACCGCCCCCAAAACC
ACCGCGGCGCAAGAAGCGTGGCCGTCCTCCAAAGAAAGCTCTGCGTGTCT
CCCAGCACCACCCGGTACAAGTACATTCTAGAATCGTCAAGAAGGAGCCC
GTAGAGACACCGGTGGCCGCTCATAAACGGGATCCCATGGTTGCCTTGAC
TCACGTACCGCTTCATATGTCCGCCGAACGACAATTTAAAAGAAAGAAGC
GCGCAACGCCCCGCAAGATTGTCGCGCCACAACAAACCGTGCCGCCAGAG
ACCACAGACCCCATGACACAGATGATTGAGCGCATGCAGAGAAGGATCAC
GAGGCAAGAGAAACAGATCGTGCTTTTGTCTCAGCAGCTCAAGGCTAGGG
AAGCGGCACAGGACTCCGCTATGGGTCATGGTTATCTGCCCTCCATTGCG
ATGCTTTCTCGCACATTGGATCCAGAAGCAGTCAAGGCACAGGGCGAAAA
GGTGAACCAAAAAGCCGTCTGCTTCCAAACAACGCTTGCTCAGTACGTTG
TTCTGATGGAGAACGCGAGCAAAGCAAGAAAGGACGTGGAGCGCGCTTGG
AAGCACCTGGCGGAGGAGGGACGCTGCGCGGAAGAGCATGCCATGCAGGT
GGAGCTTTTCCTGTCCAAGCTAACGCCTCTCACAGAATTCGTGCGCTCGG
TGAGAATGTAG

protein sequence of Ggra1009.t1

>Ggra1009.t1 ID=Ggra1009.t1|Name=Ggra1009.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=637bp
MCTSLAALRFRPGDLVLCRYLNYPVWPARIALSHQRSACNSFVSQRRTRR
GDAAVLAYWVVFTAESVGGWVRADCVLPYHPAYTAAMRAPPRAAPVFRER
RRALALARREFARGRSRFSFCETDLHLLRQLCAMPIDDFVDVRGGDSDAE
CERRVSDHTAAADEQGGRRDSGDKRASLCARLRARALPRRSAAMQLRSRQ
PKRELRPHSARVLRTKSAKLADMEEEEEEQHAATFVQQSLHAPLKPPPKQ
PVSNAAHHQTVAHAECFEERQREVHTNIQCLGAEERQMHENNQCLGAGER
QMHENNQCLGAGERQMHENNQCLGAEERQMHADNQCLGAEGRQIQTNEYL
ASEERQIRTNECLGSEERHMQTNECPGSEERQIRTDDCNGADEAEIHPEE
LEPQQHISMQPEPPPKPPRRKKRGRPPKKALRVSQHHPVQVHSRIVKKEP
VETPVAAHKRDPMVALTHVPLHMSAERQFKRKKRATPRKIVAPQQTVPPE
TTDPMTQMIERMQRRITRQEKQIVLLSQQLKAREAAQDSAMGHGYLPSIA
MLSRTLDPEAVKAQGEKVNQKAVCFQTTLAQYVVLMENASKARKDVERAW
KHLAEEGRCAEEHAMQVELFLSKLTPLTEFVRSVRM*

mRNA from alignment at tig00000027_pilon:386088..387998+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1009.t1 ID=Ggra1009.t1|Name=Ggra1009.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1911bp|location=Sequence derived from alignment at tig00000027_pilon:386088..387998+ (Gracilaria gracilis GNS1m male)
ATGTGCACGTCGCTCGCCGCGCTACGCTTCCGCCCAGGCGACCTGGTGCT
ATGCCGCTACCTCAACTACCCCGTGTGGCCGGCGCGCATCGCGCTGAGCC
ACCAGCGCAGCGCGTGCAACAGCTTCGTCAGCCAGCGGCGCACGCGCCGC
GGCGACGCCGCCGTGCTGGCGTACTGGGTGGTGTTCACGGCCGAGAGCGT
GGGCGGTTGGGTACGCGCCGACTGCGTGCTGCCATATCACCCCGCGTACA
CCGCCGCCATgcgcgcgccgccgcgcgccgcgcccgtgttccgcgagcgt
cgccgcgcgctggcgctcgcgcgccgcgagtttgcgcgcggacgctcgcg
cTTTTCGTTTTGTGAGACGGACTTGCACCTGCTGCGGCAGCTGTGCGCCA
TGCCCATCGACGACTTTGTCGATGTCAGGGGCGGAGACTCGGACGCTGAG
TGTGAGCGTCGCGTCAGCGACCATACGGCCGCCGCGGACGAGCAAGGGGG
GCGGCGTGATTCGGGCGACAAGCGCGCTTCTTTGTGCGCTCGTTTGCGCG
CTCGTGCGCTCCCGCGCCGTTCGGCCGCTATGCAGTTGAGGTCGCGCCAG
CCTAAGCGTGAGTTGCGCCCGCACTCTGCTCGTGTGCTGCGCACCAAATC
CGCCAAGCTTGCAGACATggaggaggaggaggaagagCAACACGCTGCAA
CTTTTGTACAGCAGTCGTTGCATGCTCCTTTGAAACCACCTCCCAAACAG
CCGGTTTCCAACGCTGCCCATCACCAAACTGTGGCACATGCAGAGTGTTT
TGAAGAACGACAACGCGAAGTACACACAAACATCCAGTGTCTTGGCGCAG
AGGAACGCCAAATGCACGAAAACAACCAGTGTCTTGGCGCAGGGGAACGC
CAAATGCACGAAAACAACCAGTGTCTTGGCGCAGGGGAACGCCAAATGCA
CGAAAACAACCAGTGTCTTGGCGCAGAGGAACGCCAAATGCACGCAGACA
ACCAGTGTCTTGGCGCAGAGGGACGCCAAATACAAACAAACGAGTATCTT
GCTTCGGAGGAACGTCAAATACGAACAAACGAGTGTCTTGGTTCGGAGGA
ACGCCATATGCAAACAAACGAGTGTCCTGGTTCGGAGGAACGCCAAATAC
GTACAGACGACTGTAATGGCGCGGATGAAGCAGAAATACACCCAGAGGAG
CTCGAACCGCAGCAGCACATATCCATGCAACCCGAACCGCCCCCAAAACC
ACCGCGGCGCAAGAAGCGTGGCCGTCCTCCAAAGAAAGCTCTGCGTGTCT
CCCAGCACCACCCGGTACAAGTACATTCTAGAATCGTCAAGAAGGAGCCC
GTAGAGACACCGGTGGCCGCTCATAAACGGGATCCCATGGTTGCCTTGAC
TCACGTACCGCTTCATATGTCCGCCGAACGACAATTTAAAAGAAAGAAGC
GCGCAACGCCCCGCAAGATTGTCGCGCCACAACAAACCGTGCCGCCAGAG
ACCACAGACCCCATGACACAGATGATTGAGCGCATGCAGAGAAGGATCAC
GAGGCAAGAGAAACAGATCGTGCTTTTGTCTCAGCAGCTCAAGGCTAGGG
AAGCGGCACAGGACTCCGCTATGGGTCATGGTTATCTGCCCTCCATTGCG
ATGCTTTCTCGCACATTGGATCCAGAAGCAGTCAAGGCACAGGGCGAAAA
GGTGAACCAAAAAGCCGTCTGCTTCCAAACAACGCTTGCTCAGTACGTTG
TTCTGATGGAGAACGCGAGCAAAGCAAGAAAGGACGTGGAGCGCGCTTGG
AAGCACCTGGCGGAGGAGGGACGCTGCGCGGAAGAGCATGCCATGCAGGT
GGAGCTTTTCCTGTCCAAGCTAACGCCTCTCACAGAATTCGTGCGCTCGG
TGAGAATGTAG

Coding sequence (CDS) from alignment at tig00000027_pilon:386088..387998+

>Ggra1009.t1 ID=Ggra1009.t1|Name=Ggra1009.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1911bp|location=Sequence derived from alignment at tig00000027_pilon:386088..387998+ (Gracilaria gracilis GNS1m male)
ATGTGCACGTCGCTCGCCGCGCTACGCTTCCGCCCAGGCGACCTGGTGCT
ATGCCGCTACCTCAACTACCCCGTGTGGCCGGCGCGCATCGCGCTGAGCC
ACCAGCGCAGCGCGTGCAACAGCTTCGTCAGCCAGCGGCGCACGCGCCGC
GGCGACGCCGCCGTGCTGGCGTACTGGGTGGTGTTCACGGCCGAGAGCGT
GGGCGGTTGGGTACGCGCCGACTGCGTGCTGCCATATCACCCCGCGTACA
CCGCCGCCATgcgcgcgccgccgcgcgccgcgcccgtgttccgcgagcgt
cgccgcgcgctggcgctcgcgcgccgcgagtttgcgcgcggacgctcgcg
cTTTTCGTTTTGTGAGACGGACTTGCACCTGCTGCGGCAGCTGTGCGCCA
TGCCCATCGACGACTTTGTCGATGTCAGGGGCGGAGACTCGGACGCTGAG
TGTGAGCGTCGCGTCAGCGACCATACGGCCGCCGCGGACGAGCAAGGGGG
GCGGCGTGATTCGGGCGACAAGCGCGCTTCTTTGTGCGCTCGTTTGCGCG
CTCGTGCGCTCCCGCGCCGTTCGGCCGCTATGCAGTTGAGGTCGCGCCAG
CCTAAGCGTGAGTTGCGCCCGCACTCTGCTCGTGTGCTGCGCACCAAATC
CGCCAAGCTTGCAGACATggaggaggaggaggaagagCAACACGCTGCAA
CTTTTGTACAGCAGTCGTTGCATGCTCCTTTGAAACCACCTCCCAAACAG
CCGGTTTCCAACGCTGCCCATCACCAAACTGTGGCACATGCAGAGTGTTT
TGAAGAACGACAACGCGAAGTACACACAAACATCCAGTGTCTTGGCGCAG
AGGAACGCCAAATGCACGAAAACAACCAGTGTCTTGGCGCAGGGGAACGC
CAAATGCACGAAAACAACCAGTGTCTTGGCGCAGGGGAACGCCAAATGCA
CGAAAACAACCAGTGTCTTGGCGCAGAGGAACGCCAAATGCACGCAGACA
ACCAGTGTCTTGGCGCAGAGGGACGCCAAATACAAACAAACGAGTATCTT
GCTTCGGAGGAACGTCAAATACGAACAAACGAGTGTCTTGGTTCGGAGGA
ACGCCATATGCAAACAAACGAGTGTCCTGGTTCGGAGGAACGCCAAATAC
GTACAGACGACTGTAATGGCGCGGATGAAGCAGAAATACACCCAGAGGAG
CTCGAACCGCAGCAGCACATATCCATGCAACCCGAACCGCCCCCAAAACC
ACCGCGGCGCAAGAAGCGTGGCCGTCCTCCAAAGAAAGCTCTGCGTGTCT
CCCAGCACCACCCGGTACAAGTACATTCTAGAATCGTCAAGAAGGAGCCC
GTAGAGACACCGGTGGCCGCTCATAAACGGGATCCCATGGTTGCCTTGAC
TCACGTACCGCTTCATATGTCCGCCGAACGACAATTTAAAAGAAAGAAGC
GCGCAACGCCCCGCAAGATTGTCGCGCCACAACAAACCGTGCCGCCAGAG
ACCACAGACCCCATGACACAGATGATTGAGCGCATGCAGAGAAGGATCAC
GAGGCAAGAGAAACAGATCGTGCTTTTGTCTCAGCAGCTCAAGGCTAGGG
AAGCGGCACAGGACTCCGCTATGGGTCATGGTTATCTGCCCTCCATTGCG
ATGCTTTCTCGCACATTGGATCCAGAAGCAGTCAAGGCACAGGGCGAAAA
GGTGAACCAAAAAGCCGTCTGCTTCCAAACAACGCTTGCTCAGTACGTTG
TTCTGATGGAGAACGCGAGCAAAGCAAGAAAGGACGTGGAGCGCGCTTGG
AAGCACCTGGCGGAGGAGGGACGCTGCGCGGAAGAGCATGCCATGCAGGT
GGAGCTTTTCCTGTCCAAGCTAACGCCTCTCACAGAATTCGTGCGCTCGG
TGAGAATGTAG